© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03465 |
| Gene name | |
| Location | scaffold_03:2774569..2775186 |
| Strand | + |
| Gene length (bp) | 617 |
| Transcript length (bp) | 420 |
| Coding sequence length (bp) | 420 |
| Protein length (aa) | 140 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03669 | ASTER | PAT complex subunit Asterix | 3.4E-06 | 28 | 114 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0044183 | protein folding chaperone | Yes |
| GO:0030176 | integral component of endoplasmic reticulum membrane | Yes |
| GO:0045048 | protein insertion into ER membrane | Yes |
| GO:0031300 | intrinsic component of organelle membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0009987 | cellular process | No |
| GO:0033036 | macromolecule localization | No |
| GO:0008104 | protein localization | No |
| GO:0090150 | establishment of protein localization to membrane | No |
| GO:0016021 | integral component of membrane | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0072657 | protein localization to membrane | No |
| GO:0051668 | localization within membrane | No |
| GO:0051641 | cellular localization | No |
| GO:0031227 | intrinsic component of endoplasmic reticulum membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0031301 | integral component of organelle membrane | No |
| GO:0051205 | protein insertion into membrane | No |
| GO:0003674 | molecular_function | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0008150 | biological_process | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 100 | 122 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 197.49 | 106.34 | 288.65 |
| Alive | In ants, during behavior modification | 178.06 | 93.82 | 262.31 |
| Dead | In ants, recently dead | 157.28 | 81.08 | 233.48 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.666590 | no |
| Alive | Dead | 0.544032 | no |
| Dead | Fungus | 0.298825 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03465 MTMTVTSKSPTKRLASSRKAQRKMAPVKDMRRQDLIVPYQEPAATGDKGDLSSTVATTMPMAAMFTRNKFIGWAA VVFSIQSWLGESEEARKSGGTPGYFTVLMSVMALGVTYLPLVLPPAVSGPAASGTSAPLPVPPR* |
| Coding | >Ophcf2|03465 ATGACAATGACAGTAACATCAAAGTCCCCAACCAAACGACTCGCCAGCAGCCGCAAAGCCCAGCGAAAAATGGCG CCCGTCAAAGACATGCGACGACAAGATCTAATCGTGCCGTACCAAGAACCGGCGGCGACGGGCGACAAGGGGGAT CTTTCGTCGACGGTTGCGACGACGATGCCTATGGCCGCTATGTTTACGCGCAACAAGTTCATCGGCTGGGCCGCC GTCGTCTTCTCCATTCAGAGCTGGCTAGGCGAAAGCGAAGAAGCCAGAAAGAGCGGCGGAACACCGGGATATTTC ACCGTCCTCATGTCCGTTATGGCTTTGGGGGTTACCTATCTTCCGCTTGTTTTGCCGCCGGCCGTGTCTGGACCG GCTGCTTCTGGGACGTCTGCTCCGCTGCCGGTGCCGCCTCGTTGA |
| Transcript | >Ophcf2|03465 ATGACAATGACAGTAACATCAAAGTCCCCAACCAAACGACTCGCCAGCAGCCGCAAAGCCCAGCGAAAAATGGCG CCCGTCAAAGACATGCGACGACAAGATCTAATCGTGCCGTACCAAGAACCGGCGGCGACGGGCGACAAGGGGGAT CTTTCGTCGACGGTTGCGACGACGATGCCTATGGCCGCTATGTTTACGCGCAACAAGTTCATCGGCTGGGCCGCC GTCGTCTTCTCCATTCAGAGCTGGCTAGGCGAAAGCGAAGAAGCCAGAAAGAGCGGCGGAACACCGGGATATTTC ACCGTCCTCATGTCCGTTATGGCTTTGGGGGTTACCTATCTTCCGCTTGTTTTGCCGCCGGCCGTGTCTGGACCG GCTGCTTCTGGGACGTCTGCTCCGCTGCCGGTGCCGCCTCGTTGA |
| Gene | >Ophcf2|03465 ATGACAATGACAGTAACATCAAAGTCCCCAACCAAACGACTCGCCAGCAGCCGCAAAGCCCAGCGAAAAATGGCG CCCGTCAAAGACATGCGACGACAAGATCTAAGTGATCCCCCCCCGCCCCCCATCCTCCCCTAATCCCTTACGAGG AAGATCCCCCCCCCGCTAACAGACAAAAGTCGTGCCGTACCAAGAACCGGCGGCGACGGGCGACAAGGGGGATCT TTCGTCGACGGTTGCGACGACGATGCCTATGGCCGCTATGTTTACGCGCAACAAGTTCATCGGCTGGTTCGTTTA AACCCCCGTGATACGACGAACAAGGAGACACAATTGAGACAAGGGCACGCAGGGCCGCCGTCGTCTTCTCCATTC AGAGCTGGCTAGGCGAAAGCGAAGAAGCCAGAAAGAGCGGCGGAACACCGGGATATTTCACCGTCCTCATGTCCG GTGAGTCTGCTCTCTCCCGGTTTCCCTGTAATTACATACTTTGGGAGCTGACGAGGTCGGCAGTTATGGCTTTGG GGGTTACCTATCTTCCGCTTGTTTTGCCGCCGGCCGTGTCTGGACCGGCTGCTTCTGGGACGTCTGCTCCGCTGC CGGTGCCGCCTCGTTGA |