© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03453 |
| Gene name | |
| Location | scaffold_03:2740879..2741443 |
| Strand | + |
| Gene length (bp) | 564 |
| Transcript length (bp) | 507 |
| Coding sequence length (bp) | 507 |
| Protein length (aa) | 169 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04145 | Ctr | Ctr copper transporter family | 8.5E-34 | 5 | 158 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0035434 | copper ion transmembrane transport | Yes |
| GO:0005375 | copper ion transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0000041 | transition metal ion transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0046915 | transition metal ion transmembrane transporter activity | No |
| GO:0006825 | copper ion transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005215 | transporter activity | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0051179 | localization | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0006812 | cation transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0030001 | metal ion transport | No |
| GO:0055085 | transmembrane transport | No |
| GO:0006811 | ion transport | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 25 | 47 | 22 |
| 2 | 142 | 164 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03453 MPMAMIFQTSPETPLFASNWTPRTPGTYAATCIFLIVLAVLARLLVAARSHQEARWRDGDARRRYVASQGRSSLA DRVAADADAKHMTLSENGVEENVFVVERDGPLVRPWRFSVDPLRALMDTVIAGVGYLLMLAVMTMNVGYFLSVLA GIFLGSLAVGRFGASAEH* |
| Coding | >Ophcf2|03453 ATGCCCATGGCAATGATCTTCCAAACCAGTCCCGAAACCCCCCTCTTCGCCTCCAACTGGACGCCCCGCACGCCA GGGACCTACGCGGCAACCTGCATCTTCCTCATCGTCCTCGCCGTCCTCGCCCGTCTGCTCGTCGCCGCCCGCTCC CACCAGGAGGCGAGGTGGCGCGATGGCGACGCCCGAAGACGATACGTTGCCTCGCAGGGACGCTCCTCGCTGGCC GATCGCGTCGCTGCCGATGCCGACGCCAAGCACATGACCCTCTCGGAGAATGGCGTCGAGGAGAACGTCTTTGTC GTTGAGAGGGATGGGCCGCTTGTTAGGCCGTGGAGGTTTAGCGTTGATCCCCTTCGTGCGCTGATGGATACCGTC ATCGCTGGCGTTGGATACCTGCTCATGCTTGCCGTAATGACCATGAACGTCGGCTACTTCCTCTCCGTCCTCGCC GGCATCTTCCTCGGCAGCCTGGCCGTTGGCCGTTTCGGCGCCTCAGCCGAGCACTGA |
| Transcript | >Ophcf2|03453 ATGCCCATGGCAATGATCTTCCAAACCAGTCCCGAAACCCCCCTCTTCGCCTCCAACTGGACGCCCCGCACGCCA GGGACCTACGCGGCAACCTGCATCTTCCTCATCGTCCTCGCCGTCCTCGCCCGTCTGCTCGTCGCCGCCCGCTCC CACCAGGAGGCGAGGTGGCGCGATGGCGACGCCCGAAGACGATACGTTGCCTCGCAGGGACGCTCCTCGCTGGCC GATCGCGTCGCTGCCGATGCCGACGCCAAGCACATGACCCTCTCGGAGAATGGCGTCGAGGAGAACGTCTTTGTC GTTGAGAGGGATGGGCCGCTTGTTAGGCCGTGGAGGTTTAGCGTTGATCCCCTTCGTGCGCTGATGGATACCGTC ATCGCTGGCGTTGGATACCTGCTCATGCTTGCCGTAATGACCATGAACGTCGGCTACTTCCTCTCCGTCCTCGCC GGCATCTTCCTCGGCAGCCTGGCCGTTGGCCGTTTCGGCGCCTCAGCCGAGCACTGA |
| Gene | >Ophcf2|03453 ATGCCCATGGCAATGATCTTCCAAACCAGTCCCGAAACCCCCCTCTTCGCCTCCAACTGGACGCCCCGCACGCCA GGGACCTACGCGGCAACCTGCATCTTCCTCATCGTCCTCGCCGTCCTCGCCCGTCTGCTCGTCGCCGCCCGCTCC CACCAGGAGGCGAGGTGGCGCGATGGCGACGCCCGAAGACGATACGTTGCCTCGCAGGGACGCTCCTCGCTGGCC GATCGCGTCGCTGCCGATGCCGACGCCAAGCACATGACCCTCTCGGAGAATGGCGTCGAGGAGAACGTCTTTGTC GTTGAGAGGGATGGGCCGCTTGTTAGGCCGTGGAGGTTTAGCGTTGATCCCCTTCGTGCGCTGATGGATACCGTC ATCGCTGGCGTTGGATACCTGCTGTGAGCTCTTCTCTTCCTTCTATATACCTCTGCTACACGTATGCTAACTCCT CGCAGCATGCTTGCCGTAATGACCATGAACGTCGGCTACTTCCTCTCCGTCCTCGCCGGCATCTTCCTCGGCAGC CTGGCCGTTGGCCGTTTCGGCGCCTCAGCCGAGCACTGA |