© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03414 |
| Gene name | |
| Location | scaffold_03:2611572..2612976 |
| Strand | + |
| Gene length (bp) | 1404 |
| Transcript length (bp) | 1275 |
| Coding sequence length (bp) | 1275 |
| Protein length (aa) | 425 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01529 | DHHC | DHHC palmitoyltransferase | 2.4E-25 | 160 | 279 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016409 | palmitoyltransferase activity | Yes |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016746 | acyltransferase activity | No |
| GO:0016740 | transferase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 49 | 71 | 22 |
| 3 | 207 | 229 | 22 |
| 4 | 241 | 263 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 29.04 | 14.83 | 43.26 |
| Alive | In ants, during behavior modification | 20.17 | 9.45 | 30.88 |
| Dead | In ants, recently dead | 24.69 | 12.14 | 37.23 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.099299 | no |
| Alive | Dead | 0.333244 | no |
| Dead | Fungus | 0.489010 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03414 MRPSDSNRTATRWSIRLMPLFIAAVLGIATYSVVYRLCVRFLYRKLGKSGLTATFLVLYWVFFLLAGASYFRTFA AAQFNSGLVPLLYERDAFIRPSSDEQSSAMCAGKGFVGAFAKRPSKGRGRDPERSPWVPPDQDPDSPGLEAFYSK DVFLCEPDGRPKWCSDCRQWKPDRAHHSSELDRCVRKMDHLCPWVGGMVSETSFNFFFQFTFYTFCYCVICLSAC AYALHQEKLRGPKVDGWFIAVVAIASIFTFFTLAMTLTSARLILTNYTSIDILRKSQVIFLAVRIPRNSPSTEAF TTVSYPLERPPPSMSDTSHARSSMDRDPSRDRRATRKFAILRLEPNDNPWDLGYWGNWKSVMGSNVFEWLLPIRH SPCCNHESMESDYRLGPLLAASKKRYGVPELDGDVDGVVEMHDTAMLAP* |
| Coding | >Ophcf2|03414 ATGCGGCCAAGCGACAGCAATCGCACCGCCACCCGCTGGTCCATCCGGCTGATGCCCCTGTTCATCGCCGCTGTT CTGGGAATCGCGACCTACTCCGTCGTCTACCGCCTGTGTGTCCGCTTCTTGTACCGGAAGCTGGGCAAGTCGGGC CTCACCGCTACCTTTCTCGTTCTCTACTGGGTCTTCTTCCTGCTGGCTGGCGCGAGCTACTTTCGGACCTTTGCC GCTGCCCAGTTCAACTCGGGTCTCGTCCCGCTGTTGTACGAGCGCGATGCTTTCATCCGGCCGTCGTCGGACGAG CAGTCGTCTGCCATGTGTGCCGGTAAGGGATTCGTTGGAGCGTTTGCCAAACGGCCGAGCAAGGGTCGAGGTCGG GATCCGGAGAGGAGTCCGTGGGTGCCGCCGGATCAGGACCCGGACAGCCCCGGCCTCGAGGCCTTCTACAGCAAG GACGTCTTTCTCTGCGAACCCGACGGAAGACCAAAGTGGTGCTCCGACTGTCGACAGTGGAAGCCCGACCGTGCT CATCACTCGAGCGAGCTGGACCGCTGCGTCCGCAAGATGGACCATCTGTGTCCCTGGGTCGGCGGCATGGTGTCC GAGACGTCTTTCAACTTTTTCTTTCAGTTCACATTTTACACGTTTTGTTACTGCGTCATCTGCCTCTCCGCTTGC GCTTACGCCCTGCATCAGGAGAAGCTTCGCGGTCCCAAGGTCGACGGCTGGTTCATCGCCGTAGTCGCAATCGCC TCCATCTTCACCTTCTTCACATTGGCAATGACGCTGACGTCTGCGCGCCTCATACTCACAAACTACACCAGCATC GACATCCTGAGAAAGTCGCAAGTCATCTTTCTCGCCGTCCGCATCCCGCGAAACAGCCCGTCTACCGAGGCCTTC ACCACCGTCAGCTACCCGCTGGAACGTCCTCCGCCCAGCATGTCGGACACGTCGCACGCCCGCTCCAGCATGGAC CGCGATCCGTCTAGGGACCGGCGCGCGACGAGGAAGTTCGCCATCTTGCGGCTCGAGCCAAACGACAACCCCTGG GATCTGGGCTACTGGGGGAACTGGAAGTCCGTCATGGGCAGCAACGTCTTTGAGTGGCTGCTGCCCATCCGACAC TCCCCTTGCTGCAACCACGAGAGCATGGAGAGCGACTACCGGCTGGGGCCGCTGCTGGCCGCTTCCAAGAAGAGG TATGGCGTGCCCGAGCTCGACGGAGATGTCGACGGGGTGGTTGAGATGCACGATACGGCCATGCTTGCGCCGTGA |
| Transcript | >Ophcf2|03414 ATGCGGCCAAGCGACAGCAATCGCACCGCCACCCGCTGGTCCATCCGGCTGATGCCCCTGTTCATCGCCGCTGTT CTGGGAATCGCGACCTACTCCGTCGTCTACCGCCTGTGTGTCCGCTTCTTGTACCGGAAGCTGGGCAAGTCGGGC CTCACCGCTACCTTTCTCGTTCTCTACTGGGTCTTCTTCCTGCTGGCTGGCGCGAGCTACTTTCGGACCTTTGCC GCTGCCCAGTTCAACTCGGGTCTCGTCCCGCTGTTGTACGAGCGCGATGCTTTCATCCGGCCGTCGTCGGACGAG CAGTCGTCTGCCATGTGTGCCGGTAAGGGATTCGTTGGAGCGTTTGCCAAACGGCCGAGCAAGGGTCGAGGTCGG GATCCGGAGAGGAGTCCGTGGGTGCCGCCGGATCAGGACCCGGACAGCCCCGGCCTCGAGGCCTTCTACAGCAAG GACGTCTTTCTCTGCGAACCCGACGGAAGACCAAAGTGGTGCTCCGACTGTCGACAGTGGAAGCCCGACCGTGCT CATCACTCGAGCGAGCTGGACCGCTGCGTCCGCAAGATGGACCATCTGTGTCCCTGGGTCGGCGGCATGGTGTCC GAGACGTCTTTCAACTTTTTCTTTCAGTTCACATTTTACACGTTTTGTTACTGCGTCATCTGCCTCTCCGCTTGC GCTTACGCCCTGCATCAGGAGAAGCTTCGCGGTCCCAAGGTCGACGGCTGGTTCATCGCCGTAGTCGCAATCGCC TCCATCTTCACCTTCTTCACATTGGCAATGACGCTGACGTCTGCGCGCCTCATACTCACAAACTACACCAGCATC GACATCCTGAGAAAGTCGCAAGTCATCTTTCTCGCCGTCCGCATCCCGCGAAACAGCCCGTCTACCGAGGCCTTC ACCACCGTCAGCTACCCGCTGGAACGTCCTCCGCCCAGCATGTCGGACACGTCGCACGCCCGCTCCAGCATGGAC CGCGATCCGTCTAGGGACCGGCGCGCGACGAGGAAGTTCGCCATCTTGCGGCTCGAGCCAAACGACAACCCCTGG GATCTGGGCTACTGGGGGAACTGGAAGTCCGTCATGGGCAGCAACGTCTTTGAGTGGCTGCTGCCCATCCGACAC TCCCCTTGCTGCAACCACGAGAGCATGGAGAGCGACTACCGGCTGGGGCCGCTGCTGGCCGCTTCCAAGAAGAGG TATGGCGTGCCCGAGCTCGACGGAGATGTCGACGGGGTGGTTGAGATGCACGATACGGCCATGCTTGCGCCGTGA |
| Gene | >Ophcf2|03414 ATGCGGCCAAGCGACAGCAATCGCACCGCCACCCGCTGGTCCATCCGGCTGATGCCCCTGTTCATCGCCGCTGTT CTGGGAATCGCGACCTACTCCGTCGTCTACCGCCTGTGTGGTGCGCCTCTACCCTCTCCGGCCCGGTCTCCCCGG AGTTCTACCCTCTCTTTTAGTCGCTGACGGCTTTCCGATGTCTAGTCCGCTTCTTGTACCGGAAGCTGGGCAAGT CGGGCCTCACCGCTACCTTTCTCGTTCTCTACTGGGTCTTCTTCCTGCTGGCTGGCGCGAGCTACTTTCGGACCT TTGCCGCTGCCCAGTTCAACTCGGGTCTCGTCCCGCTGTTGTACGAGCGCGATGCTTTCATCCGGCCGTCGTCGG ACGAGCAGTCGTCTGCCATGTGTGCCGGTAAGGGATTCGTTGGAGCGTTTGCCAAACGGCCGAGCAAGGGTCGAG GTCGGGATCCGGAGAGGAGTCCGTGGGTGCCGCCGGATCAGGACCCGGACAGCCCCGGCCTCGAGGCCTTCTACA GCAAGGACGTCTTTCTCTGCGAACCCGACGGAAGACCAAAGTGGTGCTCCGACTGTCGACAGTGGAAGCCCGACC GTGCTCATCACTCGAGCGAGCTGGACCGCTGCGTCCGCAAGATGGACCATCTGTGTCCCTGGGTCGGCGGCATGG TGTCCGAGACGTGTACGTCTCCCGAAAGGAGTCTTCCTCATTGTACTGACCTGCCTCTCAGCTTTCAACTTTTTC TTTCAGTTCACATTTTACACGTTTTGTTACTGCGTCATCTGCCTCTCCGCTTGCGCTTACGCCCTGCATCAGGAG AAGCTTCGCGGTCCCAAGGTCGACGGCTGGTTCATCGCCGTAGTCGCAATCGCCTCCATCTTCACCTTCTTCACA TTGGCAATGACGCTGACGTCTGCGCGCCTCATACTCACAAACTACACCAGCATCGACATCCTGAGAAAGTCGCAA GTCATCTTTCTCGCCGTCCGCATCCCGCGAAACAGCCCGTCTACCGAGGCCTTCACCACCGTCAGCTACCCGCTG GAACGTCCTCCGCCCAGCATGTCGGACACGTCGCACGCCCGCTCCAGCATGGACCGCGATCCGTCTAGGGACCGG CGCGCGACGAGGAAGTTCGCCATCTTGCGGCTCGAGCCAAACGACAACCCCTGGGATCTGGGCTACTGGGGGAAC TGGAAGTCCGTCATGGGCAGCAACGTCTTTGAGTGGCTGCTGCCCATCCGACACTCCCCTTGCTGCAACCACGAG AGCATGGAGAGCGACTACCGGCTGGGGCCGCTGCTGGCCGCTTCCAAGAAGAGGTATGGCGTGCCCGAGCTCGAC GGAGATGTCGACGGGGTGGTTGAGATGCACGATACGGCCATGCTTGCGCCGTGA |