© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03403 |
| Gene name | |
| Location | scaffold_03:2583554..2584448 |
| Strand | - |
| Gene length (bp) | 894 |
| Transcript length (bp) | 726 |
| Coding sequence length (bp) | 726 |
| Protein length (aa) | 242 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02386 | TrkH | Cation transport protein | 7.4E-45 | 7 | 207 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008324 | cation transmembrane transporter activity | Yes |
| GO:0006812 | cation transport | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0051179 | localization | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0006811 | ion transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 32 | 19 |
| 2 | 81 | 103 | 22 |
| 3 | 127 | 149 | 22 |
| 4 | 181 | 203 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 17.14 | 6.07 | 28.21 |
| Alive | In ants, during behavior modification | 4.89 | 0.69 | 9.09 |
| Dead | In ants, recently dead | 5.05 | 0.94 | 9.16 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000454 | yes |
| Alive | Dead | 0.939091 | no |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03403 MLLSKQPSISTAYFFGIHLLGGTMLTIWINVADDKYMDYLDETGINPTWWAFYTSQSAVNNLGFTLTPDSMMHFR DAPFPLSLLAILGLLGASLYPVALRCLIWTLGRTRYFTSEVAYLLRHPRRCCTLLFPSGTTYALLAIIFGLTAVD TLLVVVLDRDTAQAAASRHTGMSPYHLSAVTPAVQFSLLVMMYISSLPIALSIRTTTPQYDDRPLATYPPPPPST TSTARRPTPCNTSGSN* |
| Coding | >Ophcf2|03403 ATGCTACTGTCTAAGCAACCATCAATCTCGACAGCCTACTTCTTCGGCATTCACCTCCTCGGCGGCACCATGCTC ACCATCTGGATCAACGTCGCAGACGACAAGTACATGGATTATCTCGACGAAACGGGCATCAACCCAACTTGGTGG GCCTTCTACACCTCCCAATCAGCAGTCAACAACCTCGGCTTCACCCTAACCCCCGACTCAATGATGCACTTCCGC GACGCGCCCTTCCCCCTCTCCCTCCTCGCAATCCTAGGCCTCCTCGGCGCATCTCTCTACCCCGTGGCCCTACGC TGCCTCATCTGGACGCTCGGGAGGACGCGCTACTTCACATCAGAGGTTGCCTACCTGCTACGACACCCACGACGG TGCTGCACGCTGCTGTTCCCTTCGGGGACGACGTACGCGCTGCTGGCCATCATCTTCGGTCTTACTGCCGTTGAT ACGCTGCTTGTTGTCGTGTTGGATAGGGATACTGCTCAGGCCGCTGCTTCGAGACATACGGGAATGTCGCCCTAT CATCTTTCAGCCGTCACCCCGGCCGTACAGTTCAGCCTCCTGGTGATGATGTACATCTCATCCCTCCCCATCGCC CTCAGCATCCGCACCACAACTCCCCAATACGACGACCGGCCGCTAGCAACCTACCCTCCCCCCCCCCCCTCTACG ACGAGCACCGCTCGGCGACCTACCCCGTGCAACACGTCCGGAAGCAACTGA |
| Transcript | >Ophcf2|03403 ATGCTACTGTCTAAGCAACCATCAATCTCGACAGCCTACTTCTTCGGCATTCACCTCCTCGGCGGCACCATGCTC ACCATCTGGATCAACGTCGCAGACGACAAGTACATGGATTATCTCGACGAAACGGGCATCAACCCAACTTGGTGG GCCTTCTACACCTCCCAATCAGCAGTCAACAACCTCGGCTTCACCCTAACCCCCGACTCAATGATGCACTTCCGC GACGCGCCCTTCCCCCTCTCCCTCCTCGCAATCCTAGGCCTCCTCGGCGCATCTCTCTACCCCGTGGCCCTACGC TGCCTCATCTGGACGCTCGGGAGGACGCGCTACTTCACATCAGAGGTTGCCTACCTGCTACGACACCCACGACGG TGCTGCACGCTGCTGTTCCCTTCGGGGACGACGTACGCGCTGCTGGCCATCATCTTCGGTCTTACTGCCGTTGAT ACGCTGCTTGTTGTCGTGTTGGATAGGGATACTGCTCAGGCCGCTGCTTCGAGACATACGGGAATGTCGCCCTAT CATCTTTCAGCCGTCACCCCGGCCGTACAGTTCAGCCTCCTGGTGATGATGTACATCTCATCCCTCCCCATCGCC CTCAGCATCCGCACCACAACTCCCCAATACGACGACCGGCCGCTAGCAACCTACCCTCCCCCCCCCCCCTCTACG ACGAGCACCGCTCGGCGACCTACCCCGTGCAACACGTCCGGAAGCAACTGA |
| Gene | >Ophcf2|03403 ATGCTACTGTCTAAGCAACCATCAATCTCGACAGCCTACTTCTTCGGCATTCACCTCCTCGGCGGCACCATGCTC ACCATCTGGATCAACGTCGCAGACGACAAGTACATGGATTATCTCGACGAAACGGGCATCAACCCAACTTGGTGG TACGAACTCCCCCCTCCCTCCCCTTCAGAACCTCATCTAAACATACTAATCAACCAGGGCCTTCTACACCTCCCA ATCAGCAGTCAACAACCTCGGCTTCACCCTAACCCCCGACTCAATGATGCACTTCCGCGACGCGCCCTTCCCCCT CTCCCTCCTCGCAATCCTAGGCCTCCTCGGCGCATCTCTCTACCCCGTGGCCCTACGCTGCCTCATCTGGACGCT CGGGAGGACGCGCTACTTCACATCAGAGGTTGCCTACCTGCTACGACACCCACGACGGTGCTGCACGCTGCTGTT CCCTTCGGGGACGACGTACGCGCTGCTGGCCATCATCTTCGGTCTTACTGCCGTTGATACGCTGCTTGTTGTCGT GTTGGATAGGGATACTGCTCAGGTTGCTGGTCTCTCCCTTGCGGAGAGAGTTGCTGCTGCTTTCTTTCAGGCCGC TGCTTCGAGACATACGGGAATGTCGCCCTATCATCTTTCAGCCGTCACCCCGGCCGTACAGTTCAGGTAACCCGT CCCCGAAGACTCACCCGACCCTTTTCAAAACAACGACTGACAACGGAGACCAGCCTCCTGGTGATGATGTACATC TCATCCCTCCCCATCGCCCTCAGCATCCGCACCACAACTCCCCAATACGACGACCGGCCGCTAGCAACCTACCCT CCCCCCCCCCCCTCTACGACGAGCACCGCTCGGCGACCTACCCCGTGCAACACGTCCGGAAGCAACTGA |