Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03403
Gene name
Locationscaffold_03:2583554..2584448
Strand-
Gene length (bp)894
Transcript length (bp)726
Coding sequence length (bp)726
Protein length (aa) 242

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02386 TrkH Cation transport protein 7.4E-45 7 207

GO

GO Term Description Terminal node
GO:0008324 cation transmembrane transporter activity Yes
GO:0006812 cation transport Yes
GO:0055085 transmembrane transport Yes
GO:0051179 localization No
GO:0022857 transmembrane transporter activity No
GO:0015075 ion transmembrane transporter activity No
GO:0008150 biological_process No
GO:0006810 transport No
GO:0006811 ion transport No
GO:0009987 cellular process No
GO:0003674 molecular_function No
GO:0005215 transporter activity No
GO:0051234 establishment of localization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 13 32 19
2 81 103 22
3 127 149 22
4 181 203 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 17.14 6.07 28.21
Alive In ants, during behavior modification 4.89 0.69 9.09
Dead In ants, recently dead 5.05 0.94 9.16

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000454 yes
Alive Dead 0.939091 no
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03403
MLLSKQPSISTAYFFGIHLLGGTMLTIWINVADDKYMDYLDETGINPTWWAFYTSQSAVNNLGFTLTPDSMMHFR
DAPFPLSLLAILGLLGASLYPVALRCLIWTLGRTRYFTSEVAYLLRHPRRCCTLLFPSGTTYALLAIIFGLTAVD
TLLVVVLDRDTAQAAASRHTGMSPYHLSAVTPAVQFSLLVMMYISSLPIALSIRTTTPQYDDRPLATYPPPPPST
TSTARRPTPCNTSGSN*
Coding >Ophcf2|03403
ATGCTACTGTCTAAGCAACCATCAATCTCGACAGCCTACTTCTTCGGCATTCACCTCCTCGGCGGCACCATGCTC
ACCATCTGGATCAACGTCGCAGACGACAAGTACATGGATTATCTCGACGAAACGGGCATCAACCCAACTTGGTGG
GCCTTCTACACCTCCCAATCAGCAGTCAACAACCTCGGCTTCACCCTAACCCCCGACTCAATGATGCACTTCCGC
GACGCGCCCTTCCCCCTCTCCCTCCTCGCAATCCTAGGCCTCCTCGGCGCATCTCTCTACCCCGTGGCCCTACGC
TGCCTCATCTGGACGCTCGGGAGGACGCGCTACTTCACATCAGAGGTTGCCTACCTGCTACGACACCCACGACGG
TGCTGCACGCTGCTGTTCCCTTCGGGGACGACGTACGCGCTGCTGGCCATCATCTTCGGTCTTACTGCCGTTGAT
ACGCTGCTTGTTGTCGTGTTGGATAGGGATACTGCTCAGGCCGCTGCTTCGAGACATACGGGAATGTCGCCCTAT
CATCTTTCAGCCGTCACCCCGGCCGTACAGTTCAGCCTCCTGGTGATGATGTACATCTCATCCCTCCCCATCGCC
CTCAGCATCCGCACCACAACTCCCCAATACGACGACCGGCCGCTAGCAACCTACCCTCCCCCCCCCCCCTCTACG
ACGAGCACCGCTCGGCGACCTACCCCGTGCAACACGTCCGGAAGCAACTGA
Transcript >Ophcf2|03403
ATGCTACTGTCTAAGCAACCATCAATCTCGACAGCCTACTTCTTCGGCATTCACCTCCTCGGCGGCACCATGCTC
ACCATCTGGATCAACGTCGCAGACGACAAGTACATGGATTATCTCGACGAAACGGGCATCAACCCAACTTGGTGG
GCCTTCTACACCTCCCAATCAGCAGTCAACAACCTCGGCTTCACCCTAACCCCCGACTCAATGATGCACTTCCGC
GACGCGCCCTTCCCCCTCTCCCTCCTCGCAATCCTAGGCCTCCTCGGCGCATCTCTCTACCCCGTGGCCCTACGC
TGCCTCATCTGGACGCTCGGGAGGACGCGCTACTTCACATCAGAGGTTGCCTACCTGCTACGACACCCACGACGG
TGCTGCACGCTGCTGTTCCCTTCGGGGACGACGTACGCGCTGCTGGCCATCATCTTCGGTCTTACTGCCGTTGAT
ACGCTGCTTGTTGTCGTGTTGGATAGGGATACTGCTCAGGCCGCTGCTTCGAGACATACGGGAATGTCGCCCTAT
CATCTTTCAGCCGTCACCCCGGCCGTACAGTTCAGCCTCCTGGTGATGATGTACATCTCATCCCTCCCCATCGCC
CTCAGCATCCGCACCACAACTCCCCAATACGACGACCGGCCGCTAGCAACCTACCCTCCCCCCCCCCCCTCTACG
ACGAGCACCGCTCGGCGACCTACCCCGTGCAACACGTCCGGAAGCAACTGA
Gene >Ophcf2|03403
ATGCTACTGTCTAAGCAACCATCAATCTCGACAGCCTACTTCTTCGGCATTCACCTCCTCGGCGGCACCATGCTC
ACCATCTGGATCAACGTCGCAGACGACAAGTACATGGATTATCTCGACGAAACGGGCATCAACCCAACTTGGTGG
TACGAACTCCCCCCTCCCTCCCCTTCAGAACCTCATCTAAACATACTAATCAACCAGGGCCTTCTACACCTCCCA
ATCAGCAGTCAACAACCTCGGCTTCACCCTAACCCCCGACTCAATGATGCACTTCCGCGACGCGCCCTTCCCCCT
CTCCCTCCTCGCAATCCTAGGCCTCCTCGGCGCATCTCTCTACCCCGTGGCCCTACGCTGCCTCATCTGGACGCT
CGGGAGGACGCGCTACTTCACATCAGAGGTTGCCTACCTGCTACGACACCCACGACGGTGCTGCACGCTGCTGTT
CCCTTCGGGGACGACGTACGCGCTGCTGGCCATCATCTTCGGTCTTACTGCCGTTGATACGCTGCTTGTTGTCGT
GTTGGATAGGGATACTGCTCAGGTTGCTGGTCTCTCCCTTGCGGAGAGAGTTGCTGCTGCTTTCTTTCAGGCCGC
TGCTTCGAGACATACGGGAATGTCGCCCTATCATCTTTCAGCCGTCACCCCGGCCGTACAGTTCAGGTAACCCGT
CCCCGAAGACTCACCCGACCCTTTTCAAAACAACGACTGACAACGGAGACCAGCCTCCTGGTGATGATGTACATC
TCATCCCTCCCCATCGCCCTCAGCATCCGCACCACAACTCCCCAATACGACGACCGGCCGCTAGCAACCTACCCT
CCCCCCCCCCCCTCTACGACGAGCACCGCTCGGCGACCTACCCCGTGCAACACGTCCGGAAGCAACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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