Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03403
Gene name
Locationscaffold_03:2583554..2584448
Strand-
Gene length (bp)894
Transcript length (bp)726
Coding sequence length (bp)726
Protein length (aa) 242

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02386 TrkH Cation transport protein 7.4E-45 7 207

GO

GO Term Description Terminal node
GO:0008324 cation transmembrane transporter activity Yes
GO:0006812 cation transport Yes
GO:0055085 transmembrane transport Yes
GO:0051179 localization No
GO:0022857 transmembrane transporter activity No
GO:0015075 ion transmembrane transporter activity No
GO:0008150 biological_process No
GO:0006810 transport No
GO:0006811 ion transport No
GO:0009987 cellular process No
GO:0003674 molecular_function No
GO:0005215 transporter activity No
GO:0051234 establishment of localization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 13 32 19
2 81 103 22
3 127 149 22
4 181 203 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03403
MLLSKQPSISTAYFFGIHLLGGTMLTIWINVADDKYMDYLDETGINPTWWAFYTSQSAVNNLGFTLTPDSMMHFR
DAPFPLSLLAILGLLGASLYPVALRCLIWTLGRTRYFTSEVAYLLRHPRRCCTLLFPSGTTYALLAIIFGLTAVD
TLLVVVLDRDTAQAAASRHTGMSPYHLSAVTPAVQFSLLVMMYISSLPIALSIRTTTPQYDDRPLATYPPPPPST
TSTARRPTPCNTSGSN*
Coding >Ophcf2|03403
ATGCTACTGTCTAAGCAACCATCAATCTCGACAGCCTACTTCTTCGGCATTCACCTCCTCGGCGGCACCATGCTC
ACCATCTGGATCAACGTCGCAGACGACAAGTACATGGATTATCTCGACGAAACGGGCATCAACCCAACTTGGTGG
GCCTTCTACACCTCCCAATCAGCAGTCAACAACCTCGGCTTCACCCTAACCCCCGACTCAATGATGCACTTCCGC
GACGCGCCCTTCCCCCTCTCCCTCCTCGCAATCCTAGGCCTCCTCGGCGCATCTCTCTACCCCGTGGCCCTACGC
TGCCTCATCTGGACGCTCGGGAGGACGCGCTACTTCACATCAGAGGTTGCCTACCTGCTACGACACCCACGACGG
TGCTGCACGCTGCTGTTCCCTTCGGGGACGACGTACGCGCTGCTGGCCATCATCTTCGGTCTTACTGCCGTTGAT
ACGCTGCTTGTTGTCGTGTTGGATAGGGATACTGCTCAGGCCGCTGCTTCGAGACATACGGGAATGTCGCCCTAT
CATCTTTCAGCCGTCACCCCGGCCGTACAGTTCAGCCTCCTGGTGATGATGTACATCTCATCCCTCCCCATCGCC
CTCAGCATCCGCACCACAACTCCCCAATACGACGACCGGCCGCTAGCAACCTACCCTCCCCCCCCCCCCTCTACG
ACGAGCACCGCTCGGCGACCTACCCCGTGCAACACGTCCGGAAGCAACTGA
Transcript >Ophcf2|03403
ATGCTACTGTCTAAGCAACCATCAATCTCGACAGCCTACTTCTTCGGCATTCACCTCCTCGGCGGCACCATGCTC
ACCATCTGGATCAACGTCGCAGACGACAAGTACATGGATTATCTCGACGAAACGGGCATCAACCCAACTTGGTGG
GCCTTCTACACCTCCCAATCAGCAGTCAACAACCTCGGCTTCACCCTAACCCCCGACTCAATGATGCACTTCCGC
GACGCGCCCTTCCCCCTCTCCCTCCTCGCAATCCTAGGCCTCCTCGGCGCATCTCTCTACCCCGTGGCCCTACGC
TGCCTCATCTGGACGCTCGGGAGGACGCGCTACTTCACATCAGAGGTTGCCTACCTGCTACGACACCCACGACGG
TGCTGCACGCTGCTGTTCCCTTCGGGGACGACGTACGCGCTGCTGGCCATCATCTTCGGTCTTACTGCCGTTGAT
ACGCTGCTTGTTGTCGTGTTGGATAGGGATACTGCTCAGGCCGCTGCTTCGAGACATACGGGAATGTCGCCCTAT
CATCTTTCAGCCGTCACCCCGGCCGTACAGTTCAGCCTCCTGGTGATGATGTACATCTCATCCCTCCCCATCGCC
CTCAGCATCCGCACCACAACTCCCCAATACGACGACCGGCCGCTAGCAACCTACCCTCCCCCCCCCCCCTCTACG
ACGAGCACCGCTCGGCGACCTACCCCGTGCAACACGTCCGGAAGCAACTGA
Gene >Ophcf2|03403
ATGCTACTGTCTAAGCAACCATCAATCTCGACAGCCTACTTCTTCGGCATTCACCTCCTCGGCGGCACCATGCTC
ACCATCTGGATCAACGTCGCAGACGACAAGTACATGGATTATCTCGACGAAACGGGCATCAACCCAACTTGGTGG
TACGAACTCCCCCCTCCCTCCCCTTCAGAACCTCATCTAAACATACTAATCAACCAGGGCCTTCTACACCTCCCA
ATCAGCAGTCAACAACCTCGGCTTCACCCTAACCCCCGACTCAATGATGCACTTCCGCGACGCGCCCTTCCCCCT
CTCCCTCCTCGCAATCCTAGGCCTCCTCGGCGCATCTCTCTACCCCGTGGCCCTACGCTGCCTCATCTGGACGCT
CGGGAGGACGCGCTACTTCACATCAGAGGTTGCCTACCTGCTACGACACCCACGACGGTGCTGCACGCTGCTGTT
CCCTTCGGGGACGACGTACGCGCTGCTGGCCATCATCTTCGGTCTTACTGCCGTTGATACGCTGCTTGTTGTCGT
GTTGGATAGGGATACTGCTCAGGTTGCTGGTCTCTCCCTTGCGGAGAGAGTTGCTGCTGCTTTCTTTCAGGCCGC
TGCTTCGAGACATACGGGAATGTCGCCCTATCATCTTTCAGCCGTCACCCCGGCCGTACAGTTCAGGTAACCCGT
CCCCGAAGACTCACCCGACCCTTTTCAAAACAACGACTGACAACGGAGACCAGCCTCCTGGTGATGATGTACATC
TCATCCCTCCCCATCGCCCTCAGCATCCGCACCACAACTCCCCAATACGACGACCGGCCGCTAGCAACCTACCCT
CCCCCCCCCCCCTCTACGACGAGCACCGCTCGGCGACCTACCCCGTGCAACACGTCCGGAAGCAACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail