Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03397
Gene name
Locationscaffold_03:2570819..2571367
Strand-
Gene length (bp)548
Transcript length (bp)480
Coding sequence length (bp)480
Protein length (aa) 160

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF16015 Promethin Promethin 2.5E-26 30 133

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 29 0.45

Transmembrane Domains

Domain # Start End Length
1 56 78 22
2 85 107 22
3 112 134 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03397
MASPQESDSQHQQQSNGFHHAQEVGLLQRLLDSVVAPSSRRRAYDYASSVASSRPILFSLVASQLLFSFPPILLF
VVFTAATTALAVGAAVLFVLFWLAFALLLLLPALIVASSLALLVWAWALCSFFAARWIWSSANAVVASRNPDGHR
ASTKAATVN*
Coding >Ophcf2|03397
ATGGCCTCCCCGCAAGAATCGGACAGTCAGCACCAACAGCAAAGCAACGGCTTCCACCACGCCCAAGAAGTAGGC
CTCCTCCAACGACTCTTAGATTCCGTCGTCGCCCCGTCTTCGCGCCGTCGCGCATACGACTACGCCTCGTCCGTC
GCCTCGTCGCGGCCGATCCTCTTCTCGCTGGTCGCGTCGCAGTTACTCTTCTCCTTCCCCCCTATCCTCCTCTTC
GTCGTCTTCACCGCCGCAACCACCGCTCTCGCCGTCGGCGCCGCCGTCCTCTTCGTCCTCTTTTGGCTCGCCTTC
GCTCTTCTCCTCCTCCTCCCCGCCCTCATCGTCGCTTCATCTCTCGCCTTGCTCGTCTGGGCTTGGGCATTGTGC
AGTTTCTTCGCCGCTCGGTGGATCTGGTCAAGCGCAAATGCCGTCGTCGCCTCAAGAAATCCTGATGGCCACCGT
GCCAGCACAAAGGCCGCTACCGTCAACTGA
Transcript >Ophcf2|03397
ATGGCCTCCCCGCAAGAATCGGACAGTCAGCACCAACAGCAAAGCAACGGCTTCCACCACGCCCAAGAAGTAGGC
CTCCTCCAACGACTCTTAGATTCCGTCGTCGCCCCGTCTTCGCGCCGTCGCGCATACGACTACGCCTCGTCCGTC
GCCTCGTCGCGGCCGATCCTCTTCTCGCTGGTCGCGTCGCAGTTACTCTTCTCCTTCCCCCCTATCCTCCTCTTC
GTCGTCTTCACCGCCGCAACCACCGCTCTCGCCGTCGGCGCCGCCGTCCTCTTCGTCCTCTTTTGGCTCGCCTTC
GCTCTTCTCCTCCTCCTCCCCGCCCTCATCGTCGCTTCATCTCTCGCCTTGCTCGTCTGGGCTTGGGCATTGTGC
AGTTTCTTCGCCGCTCGGTGGATCTGGTCAAGCGCAAATGCCGTCGTCGCCTCAAGAAATCCTGATGGCCACCGT
GCCAGCACAAAGGCCGCTACCGTCAACTGA
Gene >Ophcf2|03397
ATGGCCTCCCCGCAAGAATCGGACAGTCAGCACCAACAGCAAAGCAACGGCTTCCACCACGCCCAAGAAGTAGGC
CTCCTCCAACGACTCTTAGATTCCGTCGTCGCCCCGTCTTCGCGCCGTCGCGCATACGACTACGCCTCGTCCGTC
GCCTCGTCGCGGCCGATCCTCTTCGTCGGTCCCTCTTCTCCTTGTCTTGTGCTGACACGACATGATGGCTGATAC
CTAGTAATGCCTGATAGTCGCTGGTCGCGTCGCAGTTACTCTTCTCCTTCCCCCCTATCCTCCTCTTCGTCGTCT
TCACCGCCGCAACCACCGCTCTCGCCGTCGGCGCCGCCGTCCTCTTCGTCCTCTTTTGGCTCGCCTTCGCTCTTC
TCCTCCTCCTCCCCGCCCTCATCGTCGCTTCATCTCTCGCCTTGCTCGTCTGGGCTTGGGCATTGTGCAGTTTCT
TCGCCGCTCGGTGGATCTGGTCAAGCGCAAATGCCGTCGTCGCCTCAAGAAATCCTGATGGCCACCGTGCCAGCA
CAAAGGCCGCTACCGTCAACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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