© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03349 |
| Gene name | |
| Location | scaffold_03:2432135..2433128 |
| Strand | + |
| Gene length (bp) | 993 |
| Transcript length (bp) | 930 |
| Coding sequence length (bp) | 930 |
| Protein length (aa) | 310 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14610 | Psg1 | Ykl077w/Psg1 (Pma1 Stabilization in Golgi) | 1.3E-36 | 109 | 286 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1042 | 0.1063 | 0.3659 | 0.4016 | 0.1563 | 0.007 | 0.2053 | 0.5949 | 0.305 | 0.0147 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 26 | 0.999686 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 257 | 279 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5470 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03349 MRSVTPLLTLLTLPLATSTTATLHRRGSDDITLSEEGYTTVAPTAPWVTINDEGQPAMTVTPSMATVSGTSTLDH AAPHDLTASVYTWVTWGAVTTSTGAPPNPTAVDKKTGQGAFSRCYRDGKGDDFAPFCRPLVNSSLLTGTTYYVTW DPDYYKPLATGNTTVEIAIRLDYLNQSTDTWTKLDTYDRVPARWGFWPLRLTDAHLKSQRYNNATITLLAYSRGA DDERNHTAALPVTFTTLGVDDMAPPPVPRGATLLVALPVALGCFFLVLAGLFFWHRQTRRINLGNVMGRSRHGYT GRRERGGGF* |
| Coding | >Ophcf2|03349 ATGCGCTCCGTTACCCCCCTCCTCACCCTCCTCACCCTCCCCCTCGCAACCAGCACAACGGCAACGCTCCACCGC CGCGGCTCCGACGACATAACCCTCTCAGAAGAAGGCTACACGACCGTCGCCCCGACAGCCCCATGGGTAACCATC AACGACGAGGGCCAGCCCGCCATGACGGTGACGCCCTCCATGGCCACCGTCAGCGGGACAAGCACGCTCGACCAC GCCGCTCCTCATGACCTCACCGCCTCCGTTTACACGTGGGTCACCTGGGGGGCGGTTACGACCAGCACGGGCGCG CCGCCCAATCCGACGGCTGTGGATAAGAAGACGGGGCAGGGCGCGTTTTCGAGGTGTTATCGTGATGGCAAGGGG GATGACTTTGCGCCGTTTTGTAGACCGCTCGTCAACTCTTCCCTCCTGACGGGCACGACTTACTATGTGACCTGG GATCCAGACTACTACAAACCCCTCGCCACCGGAAACACCACGGTCGAAATCGCCATCCGCCTCGACTACCTCAAC CAGTCCACCGACACCTGGACCAAACTCGACACTTACGACCGCGTCCCCGCAAGATGGGGCTTCTGGCCCCTCCGC CTGACCGACGCCCACCTCAAATCCCAACGCTACAACAACGCGACCATCACCCTGCTGGCCTACTCCCGCGGCGCC GACGACGAGCGCAACCACACGGCCGCCCTGCCCGTGACGTTCACGACGCTCGGCGTCGACGACATGGCGCCCCCT CCCGTACCCCGGGGCGCAACGCTGCTGGTCGCCCTGCCCGTCGCGCTGGGATGCTTCTTCCTCGTCCTCGCCGGC CTCTTCTTCTGGCATCGGCAGACGAGGCGCATCAATCTCGGGAATGTTATGGGTCGGTCGAGGCACGGGTATACG GGGAGGAGGGAGAGGGGAGGAGGCTTCTGA |
| Transcript | >Ophcf2|03349 ATGCGCTCCGTTACCCCCCTCCTCACCCTCCTCACCCTCCCCCTCGCAACCAGCACAACGGCAACGCTCCACCGC CGCGGCTCCGACGACATAACCCTCTCAGAAGAAGGCTACACGACCGTCGCCCCGACAGCCCCATGGGTAACCATC AACGACGAGGGCCAGCCCGCCATGACGGTGACGCCCTCCATGGCCACCGTCAGCGGGACAAGCACGCTCGACCAC GCCGCTCCTCATGACCTCACCGCCTCCGTTTACACGTGGGTCACCTGGGGGGCGGTTACGACCAGCACGGGCGCG CCGCCCAATCCGACGGCTGTGGATAAGAAGACGGGGCAGGGCGCGTTTTCGAGGTGTTATCGTGATGGCAAGGGG GATGACTTTGCGCCGTTTTGTAGACCGCTCGTCAACTCTTCCCTCCTGACGGGCACGACTTACTATGTGACCTGG GATCCAGACTACTACAAACCCCTCGCCACCGGAAACACCACGGTCGAAATCGCCATCCGCCTCGACTACCTCAAC CAGTCCACCGACACCTGGACCAAACTCGACACTTACGACCGCGTCCCCGCAAGATGGGGCTTCTGGCCCCTCCGC CTGACCGACGCCCACCTCAAATCCCAACGCTACAACAACGCGACCATCACCCTGCTGGCCTACTCCCGCGGCGCC GACGACGAGCGCAACCACACGGCCGCCCTGCCCGTGACGTTCACGACGCTCGGCGTCGACGACATGGCGCCCCCT CCCGTACCCCGGGGCGCAACGCTGCTGGTCGCCCTGCCCGTCGCGCTGGGATGCTTCTTCCTCGTCCTCGCCGGC CTCTTCTTCTGGCATCGGCAGACGAGGCGCATCAATCTCGGGAATGTTATGGGTCGGTCGAGGCACGGGTATACG GGGAGGAGGGAGAGGGGAGGAGGCTTCTGA |
| Gene | >Ophcf2|03349 ATGCGCTCCGTTACCCCCCTCCTCACCCTCCTCACCCTCCCCCTCGCAACCAGCACAACGGCAACGCTCCACCGC CGCGGCTCCGACGACATAACCCTCTCAGAAGAAGGCTACACGACCGTCGCCCCGACAGCCCCATGGGTAACCATC AACGACGAGGGCCAGCCCGCCATGACGGTGACGCCCTCCATGGCCACCGTCAGCGGGACAAGCACGCTCGACCAC GCCGCTCCTCATGACCTCACCGCCTCCGTTTACACGTGGGTCACCTGGGGGGCGGTTACGACCAGCACGGGCGCG CCGCCCAATCCGACGGCTGTGGATAAGAAGACGGGGCAGGGCGCGTTTTCGAGGTGTTATCGTGATGGCAAGGGG GATGACTTTGCGCCGTTTTGTAGACCGCTCGTCAACTCTTCCCTCCTGACGGGCACGACTTACTATGGTAAGCAC CCACTCACCTACTCTACAATGCCATGGGTACTCGATACTAACCAGGCAAACAAAGTGACCTGGGATCCAGACTAC TACAAACCCCTCGCCACCGGAAACACCACGGTCGAAATCGCCATCCGCCTCGACTACCTCAACCAGTCCACCGAC ACCTGGACCAAACTCGACACTTACGACCGCGTCCCCGCAAGATGGGGCTTCTGGCCCCTCCGCCTGACCGACGCC CACCTCAAATCCCAACGCTACAACAACGCGACCATCACCCTGCTGGCCTACTCCCGCGGCGCCGACGACGAGCGC AACCACACGGCCGCCCTGCCCGTGACGTTCACGACGCTCGGCGTCGACGACATGGCGCCCCCTCCCGTACCCCGG GGCGCAACGCTGCTGGTCGCCCTGCCCGTCGCGCTGGGATGCTTCTTCCTCGTCCTCGCCGGCCTCTTCTTCTGG CATCGGCAGACGAGGCGCATCAATCTCGGGAATGTTATGGGTCGGTCGAGGCACGGGTATACGGGGAGGAGGGAG AGGGGAGGAGGCTTCTGA |