Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03330
Gene name
Locationscaffold_03:2378638..2380010
Strand+
Gene length (bp)1372
Transcript length (bp)1188
Coding sequence length (bp)1188
Protein length (aa) 396

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00804 Syntaxin Syntaxin 1.0E-20 80 269
PF05739 SNARE SNARE domain 8.5E-09 276 323

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 27 0.45

Transmembrane Domains

Domain # Start End Length
1 309 331 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03330
MAQQYGYGARQNPFDQRDDAPAYGAPLRQPTGGYGQTSNYGGGRGYNQSPDAGYAAGGNVEMASLAQNASSFGGG
DPNQILNECRDIDRGIDEVERNLTSLRMLQKRTLDDADSSSTSAANRQLDALSSETMSLYRSLTDRIRTVKSNPD
SGTPKNKPQVGRVDRRLKAAIQQYQQVESEFRKRTQEQMARQYRIVRPDASESEIRAAVEDTNGGQVFSQALMQS
DRQGRARAALNAVEDRHAALIKIEQQIVELSQLFQDMDTLVVQQDAAVLQIEQKGEEVIDNLDKGNEEIGVAVKT
ARKTRKKKWICLGISITIIIIVVIVVLVYIFVVKGGPQNLVNNGNNNNNNNNGNNNGKRSIDDRPDDMQGLYGMT
LPVPMPRFVRRQLPLPPQTT*
Coding >Ophcf2|03330
ATGGCGCAACAGTACGGATACGGTGCGAGACAGAACCCCTTTGATCAGAGGGATGATGCCCCTGCCTACGGCGCA
CCCTTGAGGCAGCCGACCGGAGGCTACGGCCAGACGTCAAATTACGGCGGTGGTCGGGGCTATAACCAGTCTCCG
GACGCCGGCTATGCAGCAGGTGGCAACGTCGAGATGGCTTCCCTTGCCCAGAACGCCAGCTCATTCGGCGGCGGC
GATCCGAATCAGATCCTCAACGAGTGCAGGGATATCGACCGCGGAATCGACGAGGTCGAGAGAAACCTCACCAGT
CTCCGTATGCTGCAGAAGCGGACATTGGACGACGCCGACAGCTCCTCTACCAGCGCCGCTAACCGTCAACTCGAC
GCCCTCTCCTCCGAAACTATGTCGCTCTACCGCAGCCTCACCGACCGCATCCGCACCGTCAAGTCCAACCCCGAC
TCTGGCACCCCTAAGAACAAACCGCAGGTCGGCCGTGTCGACCGACGGCTCAAGGCGGCTATCCAGCAGTACCAG
CAGGTCGAGTCCGAGTTCCGCAAGCGCACGCAGGAGCAAATGGCCCGCCAGTACCGCATCGTGCGACCGGACGCC
TCCGAGAGCGAGATCCGCGCGGCTGTCGAGGACACAAACGGTGGTCAGGTCTTTAGCCAAGCCCTGATGCAGAGC
GACCGGCAAGGACGCGCGCGCGCTGCCCTGAACGCCGTCGAGGACCGTCACGCGGCTCTCATCAAGATTGAGCAG
CAGATTGTCGAGCTGTCGCAGCTGTTCCAGGATATGGACACGCTCGTCGTACAGCAGGACGCGGCCGTTTTGCAG
ATTGAGCAAAAGGGTGAAGAGGTCATCGACAACCTGGACAAGGGTAACGAGGAGATTGGCGTAGCCGTTAAGACG
GCTCGCAAGACGAGAAAGAAGAAGTGGATTTGCCTCGGCATCAGCATCACCATCATCATCATCGTCGTCATCGTC
GTCCTCGTCTACATCTTTGTCGTCAAGGGCGGACCCCAAAACCTGGTCAACAACGGGAACAACAACAACAATAAC
AACAACGGAAACAATAATGGCAAGAGATCGATTGACGATCGACCAGACGATATGCAAGGCCTGTACGGCATGACC
TTGCCGGTCCCCATGCCACGCTTCGTCCGTCGGCAACTGCCTCTCCCTCCGCAAACAACATAG
Transcript >Ophcf2|03330
ATGGCGCAACAGTACGGATACGGTGCGAGACAGAACCCCTTTGATCAGAGGGATGATGCCCCTGCCTACGGCGCA
CCCTTGAGGCAGCCGACCGGAGGCTACGGCCAGACGTCAAATTACGGCGGTGGTCGGGGCTATAACCAGTCTCCG
GACGCCGGCTATGCAGCAGGTGGCAACGTCGAGATGGCTTCCCTTGCCCAGAACGCCAGCTCATTCGGCGGCGGC
GATCCGAATCAGATCCTCAACGAGTGCAGGGATATCGACCGCGGAATCGACGAGGTCGAGAGAAACCTCACCAGT
CTCCGTATGCTGCAGAAGCGGACATTGGACGACGCCGACAGCTCCTCTACCAGCGCCGCTAACCGTCAACTCGAC
GCCCTCTCCTCCGAAACTATGTCGCTCTACCGCAGCCTCACCGACCGCATCCGCACCGTCAAGTCCAACCCCGAC
TCTGGCACCCCTAAGAACAAACCGCAGGTCGGCCGTGTCGACCGACGGCTCAAGGCGGCTATCCAGCAGTACCAG
CAGGTCGAGTCCGAGTTCCGCAAGCGCACGCAGGAGCAAATGGCCCGCCAGTACCGCATCGTGCGACCGGACGCC
TCCGAGAGCGAGATCCGCGCGGCTGTCGAGGACACAAACGGTGGTCAGGTCTTTAGCCAAGCCCTGATGCAGAGC
GACCGGCAAGGACGCGCGCGCGCTGCCCTGAACGCCGTCGAGGACCGTCACGCGGCTCTCATCAAGATTGAGCAG
CAGATTGTCGAGCTGTCGCAGCTGTTCCAGGATATGGACACGCTCGTCGTACAGCAGGACGCGGCCGTTTTGCAG
ATTGAGCAAAAGGGTGAAGAGGTCATCGACAACCTGGACAAGGGTAACGAGGAGATTGGCGTAGCCGTTAAGACG
GCTCGCAAGACGAGAAAGAAGAAGTGGATTTGCCTCGGCATCAGCATCACCATCATCATCATCGTCGTCATCGTC
GTCCTCGTCTACATCTTTGTCGTCAAGGGCGGACCCCAAAACCTGGTCAACAACGGGAACAACAACAACAATAAC
AACAACGGAAACAATAATGGCAAGAGATCGATTGACGATCGACCAGACGATATGCAAGGCCTGTACGGCATGACC
TTGCCGGTCCCCATGCCACGCTTCGTCCGTCGGCAACTGCCTCTCCCTCCGCAAACAACATAG
Gene >Ophcf2|03330
ATGGCGCAACAGTACGGGTTAGTTATCGCTCTGCCTCGCCGAGGCTCGTCTGTCAGGCTCGTGATATTGACAAAA
CATCAAGATACGGTGCGAGACAGAACCCCTTTGATCAGAGGGATGATGCCCCTGCCTACGGCGCACCCTTGAGGC
AGCCGACCGGAGGCTACGGCCAGACGTCAAATTACGGCGGTGGTCGGGGCTATAACCAGTCTCCGGACGCCGGCT
ATGCAGCAGGTGCGTTGTAGATGACAACTCTTCTACGTTCAAAATAACAGACCGAATGACTGACGACCATGACCA
GGTGGCAACGTCGAGATGGCTTCCCTTGCCCAGAACGCCAGCTCATTCGGCGGCGGCGATCCGAATCAGATCCTC
AACGAGTGCAGGGATATCGACCGCGGAATCGACGAGGTCGAGAGAAACCTCACCAGTCTCCGTATGCTGCAGAAG
CGGACATTGGACGACGCCGACAGCTCCTCTACCAGCGCCGCTAACCGTCAACTCGACGCCCTCTCCTCCGAAACT
ATGTCGCTCTACCGCAGCCTCACCGACCGCATCCGCACCGTCAAGTCCAACCCCGACTCTGGCACCCCTAAGAAC
AAACCGCAGGTCGGCCGTGTCGACCGACGGCTCAAGGCGGCTATCCAGCAGTACCAGCAGGTCGAGTCCGAGTTC
CGCAAGCGCACGCAGGAGCAAATGGCCCGCCAGTACCGCATCGTGCGACCGGACGCCTCCGAGAGCGAGATCCGC
GCGGCTGTCGAGGACACAAACGGTGGTCAGGTCTTTAGCCAAGCCCTGATGCAGAGCGACCGGCAAGGACGCGCG
CGCGCTGCCCTGAACGCCGTCGAGGACCGTCACGCGGCTCTCATCAAGATTGAGCAGCAGATTGTCGAGCTGTCG
CAGCTGTTCCAGGATATGGACACGCTCGTCGTACAGCAGGACGCGGCCGTTTTGCAGATTGAGCAAAAGGGTGAA
GAGGTCATCGACAACCTGGACAAGGGTAACGAGGAGATTGGCGTAGCCGTTAAGACGGCTCGCAAGACGAGAAAG
AAGAAGTGGATTTGCCTCGGCATCAGCAGTGAGTGGATTTGGGCGTCAGCATGTCCGAAATCAGCTAATCTGATG
TGCAGTCACCATCATCATCATCGTCGTCATCGTCGTCCTCGTCTACATCTTTGTCGTCAAGGGCGGACCCCAAAA
CCTGGTCAACAACGGGAACAACAACAACAATAACAACAACGGAAACAATAATGGCAAGAGATCGATTGACGATCG
ACCAGACGATATGCAAGGCCTGTACGGCATGACCTTGCCGGTCCCCATGCCACGCTTCGTCCGTCGGCAACTGCC
TCTCCCTCCGCAAACAACATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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