Protein ID | Ophcf2|03260 |
Gene name | |
Location | scaffold_03:1522204..1523829 |
Strand | + |
Gene length (bp) | 1625 |
Transcript length (bp) | 1569 |
Coding sequence length (bp) | 1569 |
Protein length (aa) | 523 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00226 | DnaJ | DnaJ domain | 3.9E-21 | 404 | 470 |
PF14559 | TPR_19 | Tetratricopeptide repeat | 5.5E-08 | 327 | 392 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 9.1E-02 | 330 | 347 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 24 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|03260 MRFQLSNLAVTAGLLASTGIALSSHDIPADLPASALLTSAQAHLANGETNEALVYFDAAVGKDPSNYLTLFKRAT TYLSLGRTAHATQDFERVLVLEPRFEGAHLQLAKIFSKAARWNSARVEFEAAGKRSDSPELVELAEAEGAARLVD DAVRAAKWDECVNQAGVAILVASRCAALRQTRARCRFERGEIEEGMGDLHHVLQMRPGDTYPHVLISATAFYALA DLDNGLAQIRKCLHSDPDSDICKKIHRQQKAIQKTLRNAESQLRKGQSTAAGRTLGGNPNEPGLVTTVRDQIKVL RQHGNIPFKAKAALYDKLVDMTCQAYIESNHKDAIKYCEQALELDPDSFWGLLYRGKTLLKKDQFEAAIGFLNKA AEIRPDRQEKVKSLLNKAQAALRRSKTKDYYKVLGVPRDADQRHIKSAYRKASKLHHPDKAAKQGISKEEAEKKM AAINEAYEVLSDPELRQRFDNGDDPNSQEKANPFQGSPFGGPNPFIFRQQGGPGGSQANFKFHFGGGGPFGF* |
Coding | >Ophcf2|03260 ATGCGCTTCCAGCTCTCCAACCTGGCCGTGACAGCCGGCCTGCTGGCCTCTACCGGCATCGCGCTGTCCTCGCAC GACATTCCTGCAGATCTTCCTGCATCAGCCCTCCTGACGTCTGCTCAGGCTCATCTGGCCAACGGCGAGACCAAC GAAGCCCTCGTATATTTCGATGCTGCTGTCGGCAAGGACCCGAGCAACTACCTAACGCTCTTCAAGCGCGCCACC ACCTACCTATCTCTTGGCCGCACTGCACATGCTACTCAGGATTTCGAAAGGGTTCTTGTACTCGAGCCGCGCTTC GAAGGCGCTCATCTGCAGCTGGCCAAGATATTCTCCAAGGCCGCCAGGTGGAACAGTGCCAGGGTTGAATTTGAG GCCGCCGGCAAGCGCTCCGACTCGCCCGAGCTCGTTGAGCTGGCCGAGGCGGAGGGGGCTGCTAGGCTCGTCGAC GATGCCGTCAGGGCAGCCAAATGGGATGAGTGCGTTAACCAGGCTGGCGTCGCCATCCTCGTCGCCTCGAGATGC GCAGCCCTGCGCCAGACACGCGCCCGCTGCCGCTTCGAGCGCGGCGAGATCGAAGAAGGAATGGGGGATTTGCAC CACGTACTTCAGATGAGGCCGGGCGATACGTACCCTCACGTCCTTATTTCGGCCACCGCCTTTTACGCACTGGCA GACTTGGATAATGGCCTAGCGCAGATTCGGAAATGCCTACACTCAGATCCAGATTCCGACATATGTAAAAAGATA CATCGCCAACAAAAGGCCATTCAAAAGACTCTGCGCAATGCCGAAAGCCAGCTCAGAAAGGGGCAGTCGACGGCG GCCGGCCGGACCCTAGGGGGCAACCCAAACGAGCCTGGTCTAGTCACCACTGTCAGAGATCAGATAAAAGTGTTG CGCCAACACGGCAATATACCCTTCAAGGCTAAGGCTGCGCTATATGACAAGCTCGTCGACATGACGTGCCAAGCC TATATTGAATCAAACCACAAAGACGCCATAAAGTACTGCGAACAAGCCCTGGAACTCGACCCGGATTCCTTTTGG GGCCTCCTCTACCGTGGCAAGACGCTTTTGAAAAAGGACCAGTTCGAAGCGGCCATCGGCTTCTTAAATAAGGCC GCCGAGATACGGCCCGATCGCCAGGAGAAGGTGAAATCACTCTTGAACAAGGCGCAGGCCGCCCTACGACGAAGT AAGACCAAGGACTACTACAAGGTCCTCGGCGTGCCGAGAGACGCCGATCAGCGACACATCAAGTCAGCCTACCGC AAGGCCTCCAAGCTCCACCACCCGGATAAGGCGGCTAAGCAAGGCATCAGCAAGGAAGAGGCAGAGAAGAAGATG GCGGCCATCAACGAGGCCTATGAAGTCCTGAGCGACCCGGAGCTACGCCAACGCTTCGACAATGGCGACGACCCC AACTCGCAGGAGAAGGCCAATCCCTTCCAGGGTAGTCCCTTTGGCGGACCAAATCCTTTCATCTTTCGTCAGCAA GGCGGACCTGGCGGTTCCCAAGCGAATTTCAAGTTTCACTTTGGTGGTGGCGGCCCATTTGGATTTTAG |
Transcript | >Ophcf2|03260 ATGCGCTTCCAGCTCTCCAACCTGGCCGTGACAGCCGGCCTGCTGGCCTCTACCGGCATCGCGCTGTCCTCGCAC GACATTCCTGCAGATCTTCCTGCATCAGCCCTCCTGACGTCTGCTCAGGCTCATCTGGCCAACGGCGAGACCAAC GAAGCCCTCGTATATTTCGATGCTGCTGTCGGCAAGGACCCGAGCAACTACCTAACGCTCTTCAAGCGCGCCACC ACCTACCTATCTCTTGGCCGCACTGCACATGCTACTCAGGATTTCGAAAGGGTTCTTGTACTCGAGCCGCGCTTC GAAGGCGCTCATCTGCAGCTGGCCAAGATATTCTCCAAGGCCGCCAGGTGGAACAGTGCCAGGGTTGAATTTGAG GCCGCCGGCAAGCGCTCCGACTCGCCCGAGCTCGTTGAGCTGGCCGAGGCGGAGGGGGCTGCTAGGCTCGTCGAC GATGCCGTCAGGGCAGCCAAATGGGATGAGTGCGTTAACCAGGCTGGCGTCGCCATCCTCGTCGCCTCGAGATGC GCAGCCCTGCGCCAGACACGCGCCCGCTGCCGCTTCGAGCGCGGCGAGATCGAAGAAGGAATGGGGGATTTGCAC CACGTACTTCAGATGAGGCCGGGCGATACGTACCCTCACGTCCTTATTTCGGCCACCGCCTTTTACGCACTGGCA GACTTGGATAATGGCCTAGCGCAGATTCGGAAATGCCTACACTCAGATCCAGATTCCGACATATGTAAAAAGATA CATCGCCAACAAAAGGCCATTCAAAAGACTCTGCGCAATGCCGAAAGCCAGCTCAGAAAGGGGCAGTCGACGGCG GCCGGCCGGACCCTAGGGGGCAACCCAAACGAGCCTGGTCTAGTCACCACTGTCAGAGATCAGATAAAAGTGTTG CGCCAACACGGCAATATACCCTTCAAGGCTAAGGCTGCGCTATATGACAAGCTCGTCGACATGACGTGCCAAGCC TATATTGAATCAAACCACAAAGACGCCATAAAGTACTGCGAACAAGCCCTGGAACTCGACCCGGATTCCTTTTGG GGCCTCCTCTACCGTGGCAAGACGCTTTTGAAAAAGGACCAGTTCGAAGCGGCCATCGGCTTCTTAAATAAGGCC GCCGAGATACGGCCCGATCGCCAGGAGAAGGTGAAATCACTCTTGAACAAGGCGCAGGCCGCCCTACGACGAAGT AAGACCAAGGACTACTACAAGGTCCTCGGCGTGCCGAGAGACGCCGATCAGCGACACATCAAGTCAGCCTACCGC AAGGCCTCCAAGCTCCACCACCCGGATAAGGCGGCTAAGCAAGGCATCAGCAAGGAAGAGGCAGAGAAGAAGATG GCGGCCATCAACGAGGCCTATGAAGTCCTGAGCGACCCGGAGCTACGCCAACGCTTCGACAATGGCGACGACCCC AACTCGCAGGAGAAGGCCAATCCCTTCCAGGGTAGTCCCTTTGGCGGACCAAATCCTTTCATCTTTCGTCAGCAA GGCGGACCTGGCGGTTCCCAAGCGAATTTCAAGTTTCACTTTGGTGGTGGCGGCCCATTTGGATTTTAG |
Gene | >Ophcf2|03260 ATGCGCTTCCAGCTCTCCAACCTGGCCGTGACAGCCGGCCTGCTGGCCTCTACCGGCATCGCGCTGTCCTCGCAC GACATTCCTGCAGATCTTCCTGCATCAGCCCTCCTGACGTCTGCTCAGGCTCATCTGGCCAACGGCGAGACCAAC GAAGCCCTCGTATATTTCGATGCTGCTGTCGGCAAGGACCCGAGCAACTACCTAACGCTCTTCAAGCGCGCCACC ACCTACCTATCTCTTGGCCGCACTGCACATGCTACTCAGGATTTCGAAAGGGTTCTTGTACTCGAGCCGCGCTTC GAAGGCGCTCATCTGCAGCTGGCCAAGATATTCTCCAAGGCCGCCAGGTGGAACAGTGCCAGGGTTGAATTTGAG GCCGCCGGCAAGCGCTCCGACTCGCCCGAGCTCGTTGAGCTGGCCGAGGCGGAGGGGGCTGCTAGGCTCGTCGAC GATGCCGTCAGGGCAGCCAAATGGGATGAGTGCGTTAACCAGGCTGGCGTCGCCATCCTCGTCGCCTCGAGATGC GCAGCCCTGCGCCAGACACGCGCCCGCTGCCGCTTCGAGCGCGGCGAGATCGAAGAAGGAATGGGGGATTTGCAC CACGTACTTCAGATGAGGCCGGGCGATACGTACCCTCACGTCCTTATTTCGGCCACCGCCTTTTACGCACTGGCA GACTTGGATAATGGCCTAGCGCAGATTCGGAAATGCCTACACTCAGATCCAGATTCCGACATATGTAAAAAGATA CATCGCCAACAAAAGGCCATTCAAAAGACTCTGCGCAATGCCGAAAGCCAGCTCAGAAAGGGGCAGTCGACGGCG GCCGGCCGGACCCTAGGGGGCAACCCAAACGAGCCTGGTCTAGTCACCACTGTCAGAGATCAGATAAAAGTGTTG CGCCAACACGGCAATATACCCTTCAAGGCTAAGGCTGCGCTATATGACAAGCTCGTCGACATGACGTGCCAAGCC TATATTGAAGTTAGAATGCCGAGAGGGTCCCCAATGACGGTGAATATGCTAACGAAGTTGGCTAGTCAAACCACA AAGACGCCATAAAGTACTGCGAACAAGCCCTGGAACTCGACCCGGATTCCTTTTGGGGCCTCCTCTACCGTGGCA AGACGCTTTTGAAAAAGGACCAGTTCGAAGCGGCCATCGGCTTCTTAAATAAGGCCGCCGAGATACGGCCCGATC GCCAGGAGAAGGTGAAATCACTCTTGAACAAGGCGCAGGCCGCCCTACGACGAAGTAAGACCAAGGACTACTACA AGGTCCTCGGCGTGCCGAGAGACGCCGATCAGCGACACATCAAGTCAGCCTACCGCAAGGCCTCCAAGCTCCACC ACCCGGATAAGGCGGCTAAGCAAGGCATCAGCAAGGAAGAGGCAGAGAAGAAGATGGCGGCCATCAACGAGGCCT ATGAAGTCCTGAGCGACCCGGAGCTACGCCAACGCTTCGACAATGGCGACGACCCCAACTCGCAGGAGAAGGCCA ATCCCTTCCAGGGTAGTCCCTTTGGCGGACCAAATCCTTTCATCTTTCGTCAGCAAGGCGGACCTGGCGGTTCCC AAGCGAATTTCAAGTTTCACTTTGGTGGTGGCGGCCCATTTGGATTTTAG |