Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03257
Gene name
Locationscaffold_03:1393527..1394042
Strand+
Gene length (bp)515
Transcript length (bp)414
Coding sequence length (bp)414
Protein length (aa) 138

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00125 Histone Core histone H2A/H2B/H3/H4 5.4E-23 4 111
PF00808 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1.2E-04 52 108

GO

GO Term Description Terminal node
GO:0003677 DNA binding Yes
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No
GO:0005488 binding No
GO:0097159 organic cyclic compound binding No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.2605 0.6773 0.049 0.1164 0.1934 0.0497 0.046 0.0195 0.0227 0.0039

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Histone-like TF

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup5191
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|1951
Ophiocordyceps australis map64 (Brazil) OphauB2|5435
Ophiocordyceps camponoti-floridani Ophcf2|03257 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|7215
Ophiocordyceps kimflemingae Ophio5|234
Ophiocordyceps subramaniannii Hirsu2|3988

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03257
MPPKAADKKPAAKAPATASKAPEKKDAGKKTATSGDKKKRSKTRKETYSSYIYKVLKQVHPDTGISNRAMSILNS
FVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSSTK*
Coding >Ophcf2|03257
ATGCCTCCCAAAGCCGCCGACAAAAAACCTGCGGCCAAGGCTCCCGCAACCGCCAGCAAGGCACCTGAGAAAAAG
GATGCAGGGAAGAAGACAGCTACGTCCGGCGACAAAAAGAAGCGTTCGAAAACCCGTAAGGAAACTTACAGCTCA
TACATCTACAAAGTCCTGAAGCAAGTTCATCCTGACACCGGCATTTCCAACCGCGCAATGTCGATTCTCAACTCC
TTTGTCAACGATATTTTTGAACGTGTCGCGACTGAGGCTTCGAAACTGGCTGCATACAATAAGAAATCCACGATA
TCCTCAAGAGAAATTCAAACTTCTGTCCGCCTGATTCTTCCTGGAGAACTCGCCAAGCACGCTGTGTCGGAAGGA
ACGAAAGCTGTTACGAAATATTCGTCGTCAACAAAATGA
Transcript >Ophcf2|03257
ATGCCTCCCAAAGCCGCCGACAAAAAACCTGCGGCCAAGGCTCCCGCAACCGCCAGCAAGGCACCTGAGAAAAAG
GATGCAGGGAAGAAGACAGCTACGTCCGGCGACAAAAAGAAGCGTTCGAAAACCCGTAAGGAAACTTACAGCTCA
TACATCTACAAAGTCCTGAAGCAAGTTCATCCTGACACCGGCATTTCCAACCGCGCAATGTCGATTCTCAACTCC
TTTGTCAACGATATTTTTGAACGTGTCGCGACTGAGGCTTCGAAACTGGCTGCATACAATAAGAAATCCACGATA
TCCTCAAGAGAAATTCAAACTTCTGTCCGCCTGATTCTTCCTGGAGAACTCGCCAAGCACGCTGTGTCGGAAGGA
ACGAAAGCTGTTACGAAATATTCGTCGTCAACAAAATGA
Gene >Ophcf2|03257
ATGCCTCCCAAAGCCGCCGACAAAAAACCTGCGGCCAAGGCTCCCGCAACCGCCAGCAAGGCACCTGAGAAAAAG
GATGCAGGGAAGAAGACAGCTACGTCCGGCGACAAAAAGAAGCGTTCGAAAACCCGTAAGGAAACTTACAGCTCA
TACATCTACAAAGGTTTGCCGCGCCAGTAACTCCCTAACGGACGACCTCTGCTAATTCTTACCATAGTCCTGAAG
CAAGTTCATCCTGACACCGGCATTTCCAACCGCGCAATGTCGATTCTCAACTCCTTTGTCAACGGTATGCATGTT
CAACATACTCTGAGGTCATTGCTCACATTGTATCAGATATTTTTGAACGTGTCGCGACTGAGGCTTCGAAACTGG
CTGCATACAATAAGAAATCCACGATATCCTCAAGAGAAATTCAAACTTCTGTCCGCCTGATTCTTCCTGGAGAAC
TCGCCAAGCACGCTGTGTCGGAAGGAACGAAAGCTGTTACGAAATATTCGTCGTCAACAAAATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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