© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03182 |
| Gene name | |
| Location | scaffold_03:867991..869526 |
| Strand | - |
| Gene length (bp) | 1535 |
| Transcript length (bp) | 1413 |
| Coding sequence length (bp) | 1413 |
| Protein length (aa) | 471 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.2E-28 | 87 | 400 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 83 | 105 | 22 |
| 2 | 120 | 142 | 22 |
| 3 | 149 | 167 | 18 |
| 4 | 171 | 193 | 22 |
| 5 | 206 | 228 | 22 |
| 6 | 238 | 260 | 22 |
| 7 | 285 | 307 | 22 |
| 8 | 317 | 339 | 22 |
| 9 | 346 | 368 | 22 |
| 10 | 373 | 395 | 22 |
| 11 | 408 | 430 | 22 |
| 12 | 435 | 457 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 156.26 | 85.43 | 227.09 |
| Alive | In ants, during behavior modification | 52.62 | 26.34 | 78.89 |
| Dead | In ants, recently dead | 115.58 | 60.54 | 170.62 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.000238 | yes |
| Dead | Fungus | 0.151275 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03182 MLQPTFRTHMTSVTATTLAANSSASLSSEKTRHDDQVVDESKPPFIALSDSDDVEASATPPPTGKTPGPEGFPDG GFDAWLVVAGGWCALFCTFGLINCVGVFQQYYASGPLRSYGGSAVSWIMSVQIFIMIFCGTIFGRIFDNYGPKWM LRIGTVTYVFGLMMVSLSTKYYHFFLAQSIVSAAGSSAVFNCCMSSLVTWFMRRRAAAFGIMVSGSSVGGVVLPI MMTQLIRRIGFPWMMRVMAFIFLGLLLIACFTVKSRLPPRPRPFRALDYVESLKDIRMSVTVAGLFFFMWGMFLP FNYALVQAQAAGTSPALIPYLLPILNAVSIIGRIVPGIIADKIGRFNVMIIISFLSAIFCLAVWTPVNNTVGIIV FMIIFGFSSGGYIGLAPTLIAQISDISQIGTRVGTAFAIQSFGALTGSPIGGALVSARHGSYLGLQLFCGFALLI GCFIFVAARYIQAGFKMVKV* |
| Coding | >Ophcf2|03182 ATGCTTCAGCCTACCTTCAGGACGCACATGACGAGCGTGACGGCCACGACGCTGGCCGCAAACTCGAGTGCCTCG CTCTCATCCGAGAAGACGCGCCATGACGATCAAGTCGTCGACGAAAGCAAGCCGCCCTTCATCGCGCTCTCCGAC TCGGACGACGTCGAGGCTTCTGCCACGCCGCCGCCGACGGGCAAGACTCCTGGACCGGAAGGGTTTCCGGATGGG GGGTTCGATGCCTGGCTTGTTGTTGCGGGGGGGTGGTGTGCGTTGTTTTGCACCTTCGGCCTTATCAACTGCGTG GGAGTCTTTCAGCAGTATTATGCTTCCGGGCCGTTGAGGAGTTATGGGGGTTCGGCGGTTAGTTGGATCATGTCA GTGCAGATCTTCATCATGATCTTTTGTGGTACCATTTTTGGGCGCATCTTCGACAACTACGGTCCTAAATGGATG CTTCGAATCGGCACCGTCACTTACGTCTTCGGTCTGATGATGGTTTCGCTCTCAACCAAATACTACCACTTCTTC CTCGCCCAGTCCATCGTCTCGGCCGCCGGTTCCAGCGCCGTCTTCAATTGCTGCATGTCGTCGCTCGTCACCTGG TTTATGCGCCGTCGGGCCGCCGCCTTTGGCATCATGGTTTCGGGCTCGTCGGTTGGTGGTGTTGTGTTACCCATC ATGATGACGCAGCTTATTCGCCGTATCGGTTTCCCCTGGATGATGCGAGTTATGGCTTTTATCTTTCTGGGCTTG TTGCTCATCGCTTGCTTCACCGTCAAGTCTCGTCTACCGCCGCGGCCGAGGCCCTTTCGCGCTTTGGACTATGTT GAGAGTCTCAAGGATATCCGCATGTCCGTCACCGTGGCTGGCTTGTTCTTCTTCATGTGGGGGATGTTCTTGCCC TTCAACTATGCCCTGGTTCAGGCTCAGGCTGCGGGCACCTCGCCGGCTTTGATTCCTTACTTGCTGCCCATTCTC AACGCCGTGAGCATCATCGGCCGCATCGTGCCCGGCATCATCGCCGACAAAATCGGCCGGTTCAACGTCATGATC ATCATCAGCTTCCTGTCCGCCATCTTCTGCCTCGCCGTGTGGACGCCCGTCAACAACACGGTCGGCATCATCGTC TTCATGATCATCTTTGGCTTCTCGTCCGGCGGCTACATTGGTCTGGCCCCGACTCTCATCGCCCAAATATCCGAC ATCAGCCAGATCGGCACCAGAGTTGGCACCGCCTTTGCCATCCAGTCGTTTGGCGCCTTGACCGGCAGCCCCATT GGCGGTGCTCTCGTTTCCGCTCGTCATGGCTCATACCTCGGCCTGCAGCTTTTTTGCGGCTTTGCCTTGTTGATT GGCTGCTTCATCTTTGTTGCTGCCAGGTATATCCAAGCTGGCTTCAAGATGGTCAAGGTGTGA |
| Transcript | >Ophcf2|03182 ATGCTTCAGCCTACCTTCAGGACGCACATGACGAGCGTGACGGCCACGACGCTGGCCGCAAACTCGAGTGCCTCG CTCTCATCCGAGAAGACGCGCCATGACGATCAAGTCGTCGACGAAAGCAAGCCGCCCTTCATCGCGCTCTCCGAC TCGGACGACGTCGAGGCTTCTGCCACGCCGCCGCCGACGGGCAAGACTCCTGGACCGGAAGGGTTTCCGGATGGG GGGTTCGATGCCTGGCTTGTTGTTGCGGGGGGGTGGTGTGCGTTGTTTTGCACCTTCGGCCTTATCAACTGCGTG GGAGTCTTTCAGCAGTATTATGCTTCCGGGCCGTTGAGGAGTTATGGGGGTTCGGCGGTTAGTTGGATCATGTCA GTGCAGATCTTCATCATGATCTTTTGTGGTACCATTTTTGGGCGCATCTTCGACAACTACGGTCCTAAATGGATG CTTCGAATCGGCACCGTCACTTACGTCTTCGGTCTGATGATGGTTTCGCTCTCAACCAAATACTACCACTTCTTC CTCGCCCAGTCCATCGTCTCGGCCGCCGGTTCCAGCGCCGTCTTCAATTGCTGCATGTCGTCGCTCGTCACCTGG TTTATGCGCCGTCGGGCCGCCGCCTTTGGCATCATGGTTTCGGGCTCGTCGGTTGGTGGTGTTGTGTTACCCATC ATGATGACGCAGCTTATTCGCCGTATCGGTTTCCCCTGGATGATGCGAGTTATGGCTTTTATCTTTCTGGGCTTG TTGCTCATCGCTTGCTTCACCGTCAAGTCTCGTCTACCGCCGCGGCCGAGGCCCTTTCGCGCTTTGGACTATGTT GAGAGTCTCAAGGATATCCGCATGTCCGTCACCGTGGCTGGCTTGTTCTTCTTCATGTGGGGGATGTTCTTGCCC TTCAACTATGCCCTGGTTCAGGCTCAGGCTGCGGGCACCTCGCCGGCTTTGATTCCTTACTTGCTGCCCATTCTC AACGCCGTGAGCATCATCGGCCGCATCGTGCCCGGCATCATCGCCGACAAAATCGGCCGGTTCAACGTCATGATC ATCATCAGCTTCCTGTCCGCCATCTTCTGCCTCGCCGTGTGGACGCCCGTCAACAACACGGTCGGCATCATCGTC TTCATGATCATCTTTGGCTTCTCGTCCGGCGGCTACATTGGTCTGGCCCCGACTCTCATCGCCCAAATATCCGAC ATCAGCCAGATCGGCACCAGAGTTGGCACCGCCTTTGCCATCCAGTCGTTTGGCGCCTTGACCGGCAGCCCCATT GGCGGTGCTCTCGTTTCCGCTCGTCATGGCTCATACCTCGGCCTGCAGCTTTTTTGCGGCTTTGCCTTGTTGATT GGCTGCTTCATCTTTGTTGCTGCCAGGTATATCCAAGCTGGCTTCAAGATGGTCAAGGTGTGA |
| Gene | >Ophcf2|03182 ATGCTTCAGCCTACCTTCAGGACGCACATGACGAGCGTGACGGCCACGACGCTGGCCGCAAACTCGAGTGCCTCG CTCTCATCCGAGAAGACGCGCCATGACGATCAAGTCGTCGACGAAAGCAAGCCGCCCTTCATCGCGCTCTCCGAC TCGGACGACGTCGAGGCTTCTGCCACGCCGCCGCCGACGGGCAAGACTCCTGGACCGGAAGGGTTTCCGGATGGG GGGTTCGATGCCTGGCTTGTTGTTGCGGGGGGGTGGTGTGCGTTGTTTTGCACCTTCGGCCTTATCAACTGCGTG GGAGTCTTTCAGCAGTATTATGCTTCCGGGCCGTTGAGGAGTTATGGGGGTTCGGCGGTTAGTTGGATCATGTCA GTGCAGATCTTCATCATGATCTTTTGTGGTACCATTGTGAGTCTGTTCTGGCCGGTTTGAATCTTTTAACTGGGT TTGGCTAACGGAGCGAATCAGTTTGGGCGCATCTTCGACAACTACGGTCCTAAATGGATGCTTCGAATCGGCACC GTCACTTACGTCTTCGGTCTGATGATGGTTTCGCTCTCAACCAAATACTACCACTTCTTCCTCGCCCAGTCCATC GTCTCGGCCGCCGGTTCCAGCGCCGTCTTCAATTGCTGCATGTCGTCGCTCGTCACCTGGTTTATGCGCCGTCGG GCCGCCGCCTTTGGCATCATGGTTTCGGGCTCGTCGGTTGGTGGTGTTGTGTTACCCATCATGATGACGCAGCTT ATTCGCCGTATCGGTTTCCCCTGGATGATGCGAGTTATGGCTTTTATCTTTCTGGGCTTGTTGCTCATCGCTTGC TTCACCGTCAAGTCTCGTCTACCGCCGCGGCCGAGGCCCTTTCGCGCTTTGGACTATGTTGAGAGTCTCAAGGAT ATCCGCATGTCCGTCACCGTGGCTGGCTTGTTCTTCTTCATGTGGGGGATGTTCTTGCCCTTCAACTATGCCCTG GTTCAGGCTCAGGCTGCGGGCACCTCGCCGGCTTTGATTCCTTACTTGCTGCCCATTCTCAACGCCGTGAGGTGA GTCTTGTTCCTCCCCATGTTCCCATAGTGTCAAAGTCTGACGAGAAGCAACCTCACAGCATCATCGGCCGCATCG TGCCCGGCATCATCGCCGACAAAATCGGCCGGTTCAACGTCATGATCATCATCAGCTTCCTGTCCGCCATCTTCT GCCTCGCCGTGTGGACGCCCGTCAACAACACGGTCGGCATCATCGTCTTCATGATCATCTTTGGCTTCTCGTCCG GCGGCTACATTGGTCTGGCCCCGACTCTCATCGCCCAAATATCCGACATCAGCCAGATCGGCACCAGAGTTGGCA CCGCCTTTGCCATCCAGTCGTTTGGCGCCTTGACCGGCAGCCCCATTGGCGGTGCTCTCGTTTCCGCTCGTCATG GCTCATACCTCGGCCTGCAGCTTTTTTGCGGCTTTGCCTTGTTGATTGGCTGCTTCATCTTTGTTGCTGCCAGGT ATATCCAAGCTGGCTTCAAGATGGTCAAGGTGTGA |