Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|03146
Gene name
Location	scaffold_03:768737..769403
Strand	+
Gene length (bp)	666
Transcript length (bp)	603
Coding sequence length (bp)	603
Protein length (aa)	201

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04892	VanZ	VanZ like family	5.2E-07	34	110

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 22	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	7	26	19
2	36	53	17
3	60	79	19
4	94	111	17

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	101.52	53.92	149.11
Alive	In ants, during behavior modification	58.83	27.64	90.03
Dead	In ants, recently dead	82.45	42.47	122.43

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.010120	yes
Alive	Dead	0.080987	no
Dead	Fungus	0.357512	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|03146 MRIRLPFAGGFVLLLLAAAYAGLSTLQLGHIVNDKVLHTVTFFVLTVVFYWIVDTNRRRTLNMTLIVCTLILGVG SEFVQSFLPNDRDFDLYDIVANVVGSLAGLGLCSWYHRRMLERRRKRKSYTAVPDEEGVELSPDYEAGLTDDQAQ PRTLEEEVDNWNENAADDWDGDIVAEASPPIAKAKEPDGHDPAEAKKRTD*
Coding	>Ophcf2\|03146 ATGCGCATACGCTTGCCTTTTGCTGGCGGCTTCGTACTGTTGCTGCTGGCTGCCGCCTACGCCGGTCTCTCTACC CTTCAGCTCGGCCACATCGTCAACGACAAGGTCTTGCATACCGTAACCTTCTTCGTCCTCACCGTCGTCTTCTAC TGGATCGTCGATACAAATCGCCGTCGCACGCTCAACATGACGCTGATCGTCTGTACTCTTATTCTCGGAGTCGGG TCCGAGTTCGTCCAAAGCTTCCTCCCCAACGACCGCGACTTCGACCTCTACGATATCGTCGCAAACGTGGTGGGT AGTCTTGCCGGCCTCGGTCTCTGCTCGTGGTATCATAGACGTATGCTTGAGCGACGCAGGAAGCGCAAATCATAC ACGGCCGTTCCTGACGAGGAGGGTGTCGAGCTGTCTCCGGACTACGAGGCGGGCTTGACCGACGACCAAGCCCAG CCGAGAACACTCGAGGAAGAGGTTGATAATTGGAACGAGAACGCCGCCGACGACTGGGACGGTGACATCGTCGCC GAGGCCTCCCCGCCCATCGCCAAGGCCAAGGAACCCGATGGCCACGATCCGGCTGAAGCCAAGAAGCGGACGGAC TGA
Transcript	>Ophcf2\|03146 ATGCGCATACGCTTGCCTTTTGCTGGCGGCTTCGTACTGTTGCTGCTGGCTGCCGCCTACGCCGGTCTCTCTACC CTTCAGCTCGGCCACATCGTCAACGACAAGGTCTTGCATACCGTAACCTTCTTCGTCCTCACCGTCGTCTTCTAC TGGATCGTCGATACAAATCGCCGTCGCACGCTCAACATGACGCTGATCGTCTGTACTCTTATTCTCGGAGTCGGG TCCGAGTTCGTCCAAAGCTTCCTCCCCAACGACCGCGACTTCGACCTCTACGATATCGTCGCAAACGTGGTGGGT AGTCTTGCCGGCCTCGGTCTCTGCTCGTGGTATCATAGACGTATGCTTGAGCGACGCAGGAAGCGCAAATCATAC ACGGCCGTTCCTGACGAGGAGGGTGTCGAGCTGTCTCCGGACTACGAGGCGGGCTTGACCGACGACCAAGCCCAG CCGAGAACACTCGAGGAAGAGGTTGATAATTGGAACGAGAACGCCGCCGACGACTGGGACGGTGACATCGTCGCC GAGGCCTCCCCGCCCATCGCCAAGGCCAAGGAACCCGATGGCCACGATCCGGCTGAAGCCAAGAAGCGGACGGAC TGA
Gene	>Ophcf2\|03146 ATGCGCATACGCTTGCCTTTTGCTGGTCAGTATCGAGTGTCGCTTTTTCTAGAGCTTCAGCTTTACTGATGGCGG CCTTTTCGATCAGGCGGCTTCGTACTGTTGCTGCTGGCTGCCGCCTACGCCGGTCTCTCTACCCTTCAGCTCGGC CACATCGTCAACGACAAGGTCTTGCATACCGTAACCTTCTTCGTCCTCACCGTCGTCTTCTACTGGATCGTCGAT ACAAATCGCCGTCGCACGCTCAACATGACGCTGATCGTCTGTACTCTTATTCTCGGAGTCGGGTCCGAGTTCGTC CAAAGCTTCCTCCCCAACGACCGCGACTTCGACCTCTACGATATCGTCGCAAACGTGGTGGGTAGTCTTGCCGGC CTCGGTCTCTGCTCGTGGTATCATAGACGTATGCTTGAGCGACGCAGGAAGCGCAAATCATACACGGCCGTTCCT GACGAGGAGGGTGTCGAGCTGTCTCCGGACTACGAGGCGGGCTTGACCGACGACCAAGCCCAGCCGAGAACACTC GAGGAAGAGGTTGATAATTGGAACGAGAACGCCGCCGACGACTGGGACGGTGACATCGTCGCCGAGGCCTCCCCG CCCATCGCCAAGGCCAAGGAACCCGATGGCCACGATCCGGCTGAAGCCAAGAAGCGGACGGACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail