© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03146 |
| Gene name | |
| Location | scaffold_03:768737..769403 |
| Strand | + |
| Gene length (bp) | 666 |
| Transcript length (bp) | 603 |
| Coding sequence length (bp) | 603 |
| Protein length (aa) | 201 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04892 | VanZ | VanZ like family | 5.2E-07 | 34 | 110 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1431 | 0.2619 | 0.13 | 0.1401 | 0.1419 | 0.0011 | 0.7514 | 0.3022 | 0.3785 | 0.0334 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 26 | 19 |
| 2 | 36 | 53 | 17 |
| 3 | 60 | 79 | 19 |
| 4 | 94 | 111 | 17 |
| Orthofinder run ID | 4 |
| Orthogroup | 4082 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03146 MRIRLPFAGGFVLLLLAAAYAGLSTLQLGHIVNDKVLHTVTFFVLTVVFYWIVDTNRRRTLNMTLIVCTLILGVG SEFVQSFLPNDRDFDLYDIVANVVGSLAGLGLCSWYHRRMLERRRKRKSYTAVPDEEGVELSPDYEAGLTDDQAQ PRTLEEEVDNWNENAADDWDGDIVAEASPPIAKAKEPDGHDPAEAKKRTD* |
| Coding | >Ophcf2|03146 ATGCGCATACGCTTGCCTTTTGCTGGCGGCTTCGTACTGTTGCTGCTGGCTGCCGCCTACGCCGGTCTCTCTACC CTTCAGCTCGGCCACATCGTCAACGACAAGGTCTTGCATACCGTAACCTTCTTCGTCCTCACCGTCGTCTTCTAC TGGATCGTCGATACAAATCGCCGTCGCACGCTCAACATGACGCTGATCGTCTGTACTCTTATTCTCGGAGTCGGG TCCGAGTTCGTCCAAAGCTTCCTCCCCAACGACCGCGACTTCGACCTCTACGATATCGTCGCAAACGTGGTGGGT AGTCTTGCCGGCCTCGGTCTCTGCTCGTGGTATCATAGACGTATGCTTGAGCGACGCAGGAAGCGCAAATCATAC ACGGCCGTTCCTGACGAGGAGGGTGTCGAGCTGTCTCCGGACTACGAGGCGGGCTTGACCGACGACCAAGCCCAG CCGAGAACACTCGAGGAAGAGGTTGATAATTGGAACGAGAACGCCGCCGACGACTGGGACGGTGACATCGTCGCC GAGGCCTCCCCGCCCATCGCCAAGGCCAAGGAACCCGATGGCCACGATCCGGCTGAAGCCAAGAAGCGGACGGAC TGA |
| Transcript | >Ophcf2|03146 ATGCGCATACGCTTGCCTTTTGCTGGCGGCTTCGTACTGTTGCTGCTGGCTGCCGCCTACGCCGGTCTCTCTACC CTTCAGCTCGGCCACATCGTCAACGACAAGGTCTTGCATACCGTAACCTTCTTCGTCCTCACCGTCGTCTTCTAC TGGATCGTCGATACAAATCGCCGTCGCACGCTCAACATGACGCTGATCGTCTGTACTCTTATTCTCGGAGTCGGG TCCGAGTTCGTCCAAAGCTTCCTCCCCAACGACCGCGACTTCGACCTCTACGATATCGTCGCAAACGTGGTGGGT AGTCTTGCCGGCCTCGGTCTCTGCTCGTGGTATCATAGACGTATGCTTGAGCGACGCAGGAAGCGCAAATCATAC ACGGCCGTTCCTGACGAGGAGGGTGTCGAGCTGTCTCCGGACTACGAGGCGGGCTTGACCGACGACCAAGCCCAG CCGAGAACACTCGAGGAAGAGGTTGATAATTGGAACGAGAACGCCGCCGACGACTGGGACGGTGACATCGTCGCC GAGGCCTCCCCGCCCATCGCCAAGGCCAAGGAACCCGATGGCCACGATCCGGCTGAAGCCAAGAAGCGGACGGAC TGA |
| Gene | >Ophcf2|03146 ATGCGCATACGCTTGCCTTTTGCTGGTCAGTATCGAGTGTCGCTTTTTCTAGAGCTTCAGCTTTACTGATGGCGG CCTTTTCGATCAGGCGGCTTCGTACTGTTGCTGCTGGCTGCCGCCTACGCCGGTCTCTCTACCCTTCAGCTCGGC CACATCGTCAACGACAAGGTCTTGCATACCGTAACCTTCTTCGTCCTCACCGTCGTCTTCTACTGGATCGTCGAT ACAAATCGCCGTCGCACGCTCAACATGACGCTGATCGTCTGTACTCTTATTCTCGGAGTCGGGTCCGAGTTCGTC CAAAGCTTCCTCCCCAACGACCGCGACTTCGACCTCTACGATATCGTCGCAAACGTGGTGGGTAGTCTTGCCGGC CTCGGTCTCTGCTCGTGGTATCATAGACGTATGCTTGAGCGACGCAGGAAGCGCAAATCATACACGGCCGTTCCT GACGAGGAGGGTGTCGAGCTGTCTCCGGACTACGAGGCGGGCTTGACCGACGACCAAGCCCAGCCGAGAACACTC GAGGAAGAGGTTGATAATTGGAACGAGAACGCCGCCGACGACTGGGACGGTGACATCGTCGCCGAGGCCTCCCCG CCCATCGCCAAGGCCAAGGAACCCGATGGCCACGATCCGGCTGAAGCCAAGAAGCGGACGGACTGA |