© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03144 |
| Gene name | |
| Location | scaffold_03:761193..762882 |
| Strand | - |
| Gene length (bp) | 1689 |
| Transcript length (bp) | 1689 |
| Coding sequence length (bp) | 1689 |
| Protein length (aa) | 563 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01794 | Ferric_reduct | Ferric reductase like transmembrane component | 1.5E-17 | 129 | 243 |
| PF08030 | NAD_binding_6 | Ferric reductase NAD binding domain | 9.6E-11 | 399 | 542 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 56 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 28 | 50 | 22 |
| 2 | 167 | 189 | 22 |
| 3 | 202 | 224 | 22 |
| 4 | 231 | 253 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 39.82 | 22.30 | 57.33 |
| Alive | In ants, during behavior modification | 44.88 | 25.32 | 64.43 |
| Dead | In ants, recently dead | 36.01 | 19.89 | 52.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.584356 | no |
| Alive | Dead | 0.190649 | no |
| Dead | Fungus | 0.655784 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03144 MAWTWTIQPPTLTEEAKHHRHTTINLYALTAHASSLTPLLFALVIKLVLVTLTQKTYVPIPTSPSAKAQRLTRAR RVRDALVRLRWWLDDDVGFGRRDEWLAGIVWLSWLLFLSIHGTGTDFLHFTKRLGAVAVSQLPAQYALSLKALNP YALAFTSSHERLNRFHGVLGRVIAVLLALHVACYNYFFVVVGIWPSRLLDRVVVYGLVAVVAVLALYLTTLTSVR RASYRLFFITHVIVALLVPPLIFFHAPSTRIYLIESLLAILADLSVRKLRSITSPSTLNLVPDAALVAIEAHVPP RFLRSVSASPGSHVYLSIPPGSSRDSSVSRAFDFLHNPFSVAFVDDRRGSITLVARLRQGPMTRTLARLASSAGK VPLTIDGPYGSVARRLVGWSPSRIVVIAGGVGATFCLPLYRFLREQLPTTTRVRLVWSVRTLADAAWASDAGLLP PDDEHDDEHDHDHDGFQLYVSGRPLAPALQDTADTDPAVELRPLRKALPPRHHRGRPHLDEVVDSVFRQGVEDSV AVLVCGPVEMAAHVRGCVRPWAMRGRDVWWHSESFGS* |
| Coding | >Ophcf2|03144 ATGGCCTGGACATGGACAATCCAACCCCCGACCCTCACCGAAGAAGCCAAGCACCATCGCCACACCACAATCAAC CTCTACGCCCTCACCGCCCACGCCTCCTCCCTCACCCCCCTCCTCTTCGCCCTCGTCATCAAACTCGTCCTCGTC ACCCTCACGCAGAAAACCTACGTCCCCATCCCCACCTCCCCTTCCGCCAAAGCGCAGCGACTCACACGCGCGAGA AGGGTTCGCGATGCCCTGGTGCGGCTCCGGTGGTGGCTAGACGATGACGTTGGGTTCGGGCGTCGGGATGAGTGG TTGGCTGGCATCGTTTGGCTATCATGGCTTCTCTTCCTCAGCATTCACGGGACGGGAACGGATTTCCTGCACTTC ACAAAGAGATTGGGTGCCGTGGCTGTCTCCCAACTTCCGGCACAGTACGCTCTCTCGCTCAAGGCGTTGAATCCC TACGCGCTGGCCTTTACGTCGTCGCATGAGCGGCTGAATCGCTTCCACGGCGTGTTGGGCAGGGTCATCGCCGTG CTGCTTGCTTTGCACGTCGCCTGCTATAATTACTTCTTCGTCGTGGTGGGTATATGGCCTTCTAGATTACTGGAT CGGGTCGTCGTTTACGGGCTTGTTGCCGTGGTTGCGGTGCTTGCTCTGTACCTTACCACTCTAACCTCGGTTCGA CGCGCTTCCTATCGCCTCTTTTTCATCACGCACGTCATCGTCGCTCTTCTCGTCCCCCCACTAATCTTCTTCCAC GCCCCTTCAACAAGAATCTACCTCATCGAATCTCTCCTCGCCATCCTAGCCGATCTATCCGTCCGCAAGCTCCGA TCCATCACCTCCCCCTCGACGCTCAACCTCGTCCCCGACGCCGCCCTCGTCGCCATCGAGGCACATGTCCCGCCG CGATTCCTACGCTCCGTATCCGCCTCGCCAGGCTCTCACGTCTATCTCAGCATCCCGCCCGGTAGCAGTCGCGAC TCGTCCGTATCACGAGCCTTTGATTTTCTCCATAACCCGTTTAGCGTTGCTTTCGTGGACGATAGACGCGGTTCC ATCACTCTCGTTGCTCGGCTTCGTCAGGGGCCCATGACTCGGACCTTGGCCCGGTTGGCCTCGTCTGCGGGAAAG GTGCCTCTCACCATAGACGGTCCCTACGGCTCTGTAGCCCGTCGTCTCGTCGGCTGGTCTCCTTCCCGTATCGTC GTCATCGCAGGCGGCGTCGGCGCAACCTTCTGTCTACCTCTTTACCGCTTCCTACGCGAGCAGCTCCCTACCACC ACCCGCGTCCGCCTCGTCTGGTCCGTCCGCACCCTCGCCGACGCAGCATGGGCCTCTGACGCCGGACTCCTCCCT CCCGACGACGAACATGACGATGAACATGACCATGACCATGACGGCTTCCAGCTCTATGTGTCGGGACGCCCTCTC GCTCCTGCTCTTCAAGACACAGCCGATACCGATCCGGCCGTCGAGCTGCGACCTCTCCGCAAGGCCTTACCGCCC AGACACCACCGTGGTCGTCCCCATCTGGACGAGGTTGTCGACTCCGTCTTCCGCCAGGGCGTCGAGGACTCCGTT GCCGTTCTCGTCTGCGGGCCGGTCGAAATGGCTGCCCACGTCAGAGGCTGCGTGCGTCCGTGGGCCATGCGCGGT AGAGACGTGTGGTGGCACAGCGAGAGCTTCGGCTCATGA |
| Transcript | >Ophcf2|03144 ATGGCCTGGACATGGACAATCCAACCCCCGACCCTCACCGAAGAAGCCAAGCACCATCGCCACACCACAATCAAC CTCTACGCCCTCACCGCCCACGCCTCCTCCCTCACCCCCCTCCTCTTCGCCCTCGTCATCAAACTCGTCCTCGTC ACCCTCACGCAGAAAACCTACGTCCCCATCCCCACCTCCCCTTCCGCCAAAGCGCAGCGACTCACACGCGCGAGA AGGGTTCGCGATGCCCTGGTGCGGCTCCGGTGGTGGCTAGACGATGACGTTGGGTTCGGGCGTCGGGATGAGTGG TTGGCTGGCATCGTTTGGCTATCATGGCTTCTCTTCCTCAGCATTCACGGGACGGGAACGGATTTCCTGCACTTC ACAAAGAGATTGGGTGCCGTGGCTGTCTCCCAACTTCCGGCACAGTACGCTCTCTCGCTCAAGGCGTTGAATCCC TACGCGCTGGCCTTTACGTCGTCGCATGAGCGGCTGAATCGCTTCCACGGCGTGTTGGGCAGGGTCATCGCCGTG CTGCTTGCTTTGCACGTCGCCTGCTATAATTACTTCTTCGTCGTGGTGGGTATATGGCCTTCTAGATTACTGGAT CGGGTCGTCGTTTACGGGCTTGTTGCCGTGGTTGCGGTGCTTGCTCTGTACCTTACCACTCTAACCTCGGTTCGA CGCGCTTCCTATCGCCTCTTTTTCATCACGCACGTCATCGTCGCTCTTCTCGTCCCCCCACTAATCTTCTTCCAC GCCCCTTCAACAAGAATCTACCTCATCGAATCTCTCCTCGCCATCCTAGCCGATCTATCCGTCCGCAAGCTCCGA TCCATCACCTCCCCCTCGACGCTCAACCTCGTCCCCGACGCCGCCCTCGTCGCCATCGAGGCACATGTCCCGCCG CGATTCCTACGCTCCGTATCCGCCTCGCCAGGCTCTCACGTCTATCTCAGCATCCCGCCCGGTAGCAGTCGCGAC TCGTCCGTATCACGAGCCTTTGATTTTCTCCATAACCCGTTTAGCGTTGCTTTCGTGGACGATAGACGCGGTTCC ATCACTCTCGTTGCTCGGCTTCGTCAGGGGCCCATGACTCGGACCTTGGCCCGGTTGGCCTCGTCTGCGGGAAAG GTGCCTCTCACCATAGACGGTCCCTACGGCTCTGTAGCCCGTCGTCTCGTCGGCTGGTCTCCTTCCCGTATCGTC GTCATCGCAGGCGGCGTCGGCGCAACCTTCTGTCTACCTCTTTACCGCTTCCTACGCGAGCAGCTCCCTACCACC ACCCGCGTCCGCCTCGTCTGGTCCGTCCGCACCCTCGCCGACGCAGCATGGGCCTCTGACGCCGGACTCCTCCCT CCCGACGACGAACATGACGATGAACATGACCATGACCATGACGGCTTCCAGCTCTATGTGTCGGGACGCCCTCTC GCTCCTGCTCTTCAAGACACAGCCGATACCGATCCGGCCGTCGAGCTGCGACCTCTCCGCAAGGCCTTACCGCCC AGACACCACCGTGGTCGTCCCCATCTGGACGAGGTTGTCGACTCCGTCTTCCGCCAGGGCGTCGAGGACTCCGTT GCCGTTCTCGTCTGCGGGCCGGTCGAAATGGCTGCCCACGTCAGAGGCTGCGTGCGTCCGTGGGCCATGCGCGGT AGAGACGTGTGGTGGCACAGCGAGAGCTTCGGCTCATGA |
| Gene | >Ophcf2|03144 ATGGCCTGGACATGGACAATCCAACCCCCGACCCTCACCGAAGAAGCCAAGCACCATCGCCACACCACAATCAAC CTCTACGCCCTCACCGCCCACGCCTCCTCCCTCACCCCCCTCCTCTTCGCCCTCGTCATCAAACTCGTCCTCGTC ACCCTCACGCAGAAAACCTACGTCCCCATCCCCACCTCCCCTTCCGCCAAAGCGCAGCGACTCACACGCGCGAGA AGGGTTCGCGATGCCCTGGTGCGGCTCCGGTGGTGGCTAGACGATGACGTTGGGTTCGGGCGTCGGGATGAGTGG TTGGCTGGCATCGTTTGGCTATCATGGCTTCTCTTCCTCAGCATTCACGGGACGGGAACGGATTTCCTGCACTTC ACAAAGAGATTGGGTGCCGTGGCTGTCTCCCAACTTCCGGCACAGTACGCTCTCTCGCTCAAGGCGTTGAATCCC TACGCGCTGGCCTTTACGTCGTCGCATGAGCGGCTGAATCGCTTCCACGGCGTGTTGGGCAGGGTCATCGCCGTG CTGCTTGCTTTGCACGTCGCCTGCTATAATTACTTCTTCGTCGTGGTGGGTATATGGCCTTCTAGATTACTGGAT CGGGTCGTCGTTTACGGGCTTGTTGCCGTGGTTGCGGTGCTTGCTCTGTACCTTACCACTCTAACCTCGGTTCGA CGCGCTTCCTATCGCCTCTTTTTCATCACGCACGTCATCGTCGCTCTTCTCGTCCCCCCACTAATCTTCTTCCAC GCCCCTTCAACAAGAATCTACCTCATCGAATCTCTCCTCGCCATCCTAGCCGATCTATCCGTCCGCAAGCTCCGA TCCATCACCTCCCCCTCGACGCTCAACCTCGTCCCCGACGCCGCCCTCGTCGCCATCGAGGCACATGTCCCGCCG CGATTCCTACGCTCCGTATCCGCCTCGCCAGGCTCTCACGTCTATCTCAGCATCCCGCCCGGTAGCAGTCGCGAC TCGTCCGTATCACGAGCCTTTGATTTTCTCCATAACCCGTTTAGCGTTGCTTTCGTGGACGATAGACGCGGTTCC ATCACTCTCGTTGCTCGGCTTCGTCAGGGGCCCATGACTCGGACCTTGGCCCGGTTGGCCTCGTCTGCGGGAAAG GTGCCTCTCACCATAGACGGTCCCTACGGCTCTGTAGCCCGTCGTCTCGTCGGCTGGTCTCCTTCCCGTATCGTC GTCATCGCAGGCGGCGTCGGCGCAACCTTCTGTCTACCTCTTTACCGCTTCCTACGCGAGCAGCTCCCTACCACC ACCCGCGTCCGCCTCGTCTGGTCCGTCCGCACCCTCGCCGACGCAGCATGGGCCTCTGACGCCGGACTCCTCCCT CCCGACGACGAACATGACGATGAACATGACCATGACCATGACGGCTTCCAGCTCTATGTGTCGGGACGCCCTCTC GCTCCTGCTCTTCAAGACACAGCCGATACCGATCCGGCCGTCGAGCTGCGACCTCTCCGCAAGGCCTTACCGCCC AGACACCACCGTGGTCGTCCCCATCTGGACGAGGTTGTCGACTCCGTCTTCCGCCAGGGCGTCGAGGACTCCGTT GCCGTTCTCGTCTGCGGGCCGGTCGAAATGGCTGCCCACGTCAGAGGCTGCGTGCGTCCGTGGGCCATGCGCGGT AGAGACGTGTGGTGGCACAGCGAGAGCTTCGGCTCATGA |