© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03137 |
| Gene name | |
| Location | scaffold_03:747619..749524 |
| Strand | - |
| Gene length (bp) | 1905 |
| Transcript length (bp) | 1761 |
| Coding sequence length (bp) | 1761 |
| Protein length (aa) | 587 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08030 | NAD_binding_6 | Ferric reductase NAD binding domain | 8.0E-32 | 422 | 570 |
| PF08022 | FAD_binding_8 | FAD-binding domain | 4.5E-19 | 291 | 415 |
| PF01794 | Ferric_reduct | Ferric reductase like transmembrane component | 4.6E-18 | 114 | 232 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Transmembrane domain | 0.1161 | 0.1057 | 0.0301 | 0.5723 | 0.0573 | 0.0144 | 0.3415 | 0.2893 | 0.2531 | 0.0049 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 60 | 82 | 22 |
| 2 | 97 | 119 | 22 |
| 3 | 140 | 162 | 22 |
| 4 | 177 | 199 | 22 |
| 5 | 220 | 242 | 22 |
| 6 | 252 | 274 | 22 |
| 7 | 313 | 332 | 19 |
| 8 | 424 | 446 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2242 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03137 MDPFNDVEYEYDYEKPSERSRWSPLTRMLLSGEMTQEKQSSLTTREKFDRWMINEGYRRIFVFVFMLAHALIFAF ASVHYALKDSLQGARDTFGVTYIIARSSAVVLHVDVGIVLFPVCRTLISLLRQTPLNGIIQFDKNITFHIMTAWS IVFWSWVHTIAHWVNFGQAAAKNRLGFYGWLVANFASGPGWTGYVMLIALMGMVATSVEKPRRANYERFWYTHHF FIIFFLFWSFHGAFCMIQPDVAPFCVGTGASAIGVFWQYWMYSGFLYLGERIAREIRGRHYTVISKVIQHPSQVC EIQIKKEHTKTRAGQYIFLCCPAVSIWQYHPFTLTSAPEEDYISVHVRCQGDFTMALSQALGCEWGKKESSSSSS SSSTEDTSKVVGVEAENTVVDPALRRVLPRVYIDGPFGSASEDVFKYEVSILVGAGIGVTPFASILKSIWYRMNY PTTKTRLSKVYFFWICRDFGSFEWFRSLLLAVEAQDVEHRIEIHTYLTAKIKADDATNIMINDANADKDTITGLR SPTSFGRPNWDMIFRGIRKLHAPGEAGVFFCGPKGLGSSLHVYCNKYTEPGFSFVWGKENF* |
| Coding | >Ophcf2|03137 ATGGATCCTTTCAACGACGTCGAGTACGAGTATGACTATGAGAAGCCGTCGGAGAGGTCGAGATGGTCGCCTTTG ACGCGGATGCTGTTGTCGGGGGAGATGACGCAGGAGAAGCAGTCGTCGCTGACGACGAGGGAAAAGTTTGACCGC TGGATGATCAACGAGGGGTATCGGCGCATCTTCGTCTTCGTCTTCATGCTTGCTCACGCCCTCATCTTCGCATTT GCTTCGGTTCATTACGCGCTCAAGGATAGTCTTCAGGGCGCGAGAGATACGTTTGGTGTGACTTACATCATCGCC CGGTCTTCGGCTGTGGTGCTGCACGTTGACGTTGGCATCGTCCTTTTTCCCGTCTGCCGGACGCTCATCTCGTTA CTTCGACAGACGCCGCTCAACGGGATCATCCAGTTCGATAAGAACATTACCTTTCACATCATGACGGCCTGGTCC ATCGTCTTCTGGTCTTGGGTCCATACCATTGCTCATTGGGTCAACTTTGGTCAGGCGGCTGCCAAGAATCGACTC GGCTTCTACGGCTGGCTCGTGGCCAACTTTGCGTCCGGGCCAGGATGGACGGGATACGTCATGCTCATTGCTCTG ATGGGCATGGTGGCGACTTCGGTAGAGAAGCCGCGTCGGGCCAACTACGAGCGGTTCTGGTATACCCATCACTTC TTCATCATCTTCTTCCTCTTCTGGTCCTTTCACGGCGCTTTCTGCATGATTCAGCCTGACGTTGCTCCCTTTTGC GTCGGGACTGGCGCCTCGGCCATTGGAGTCTTCTGGCAGTATTGGATGTACAGCGGTTTCCTCTACCTGGGAGAG CGCATCGCCCGTGAGATTCGCGGTCGTCATTACACCGTCATCTCCAAGGTCATCCAGCATCCGAGCCAGGTGTGC GAGATTCAGATCAAAAAGGAGCACACCAAGACGCGGGCCGGACAGTACATCTTCCTATGCTGCCCGGCCGTCTCT ATCTGGCAGTACCATCCCTTTACACTGACGAGCGCCCCCGAGGAGGATTACATCTCGGTTCATGTCCGCTGTCAG GGAGACTTTACCATGGCGCTGTCGCAGGCTCTCGGGTGCGAATGGGGGAAGAAGGAGTCGTCGTCGTCTTCTTCT TCCTCTTCTACCGAGGATACGAGCAAGGTGGTGGGCGTCGAGGCGGAGAATACAGTCGTCGATCCGGCGCTGAGA CGCGTCCTGCCGCGCGTTTACATCGACGGACCCTTTGGTTCCGCGTCCGAGGATGTCTTCAAGTACGAGGTTTCG ATTCTGGTCGGCGCCGGCATAGGCGTTACGCCTTTTGCCTCGATCCTCAAGTCCATCTGGTACCGGATGAACTAC CCGACGACGAAGACGCGACTGTCAAAGGTCTACTTCTTCTGGATCTGCCGCGACTTTGGCTCCTTCGAGTGGTTC CGCTCCCTATTGCTAGCCGTCGAAGCGCAAGACGTCGAGCACCGAATCGAGATCCATACCTATCTGACAGCCAAG ATCAAGGCCGACGACGCGACCAACATCATGATCAACGACGCAAACGCCGACAAGGATACCATTACCGGTCTGCGC AGCCCTACGAGCTTCGGCCGGCCGAACTGGGATATGATCTTTCGGGGGATCCGCAAGTTGCACGCTCCCGGCGAG GCTGGCGTTTTCTTCTGCGGGCCAAAGGGGTTGGGTAGCTCGTTGCACGTCTACTGCAATAAGTATACGGAGCCT GGCTTCTCTTTCGTCTGGGGCAAGGAGAACTTTTAA |
| Transcript | >Ophcf2|03137 ATGGATCCTTTCAACGACGTCGAGTACGAGTATGACTATGAGAAGCCGTCGGAGAGGTCGAGATGGTCGCCTTTG ACGCGGATGCTGTTGTCGGGGGAGATGACGCAGGAGAAGCAGTCGTCGCTGACGACGAGGGAAAAGTTTGACCGC TGGATGATCAACGAGGGGTATCGGCGCATCTTCGTCTTCGTCTTCATGCTTGCTCACGCCCTCATCTTCGCATTT GCTTCGGTTCATTACGCGCTCAAGGATAGTCTTCAGGGCGCGAGAGATACGTTTGGTGTGACTTACATCATCGCC CGGTCTTCGGCTGTGGTGCTGCACGTTGACGTTGGCATCGTCCTTTTTCCCGTCTGCCGGACGCTCATCTCGTTA CTTCGACAGACGCCGCTCAACGGGATCATCCAGTTCGATAAGAACATTACCTTTCACATCATGACGGCCTGGTCC ATCGTCTTCTGGTCTTGGGTCCATACCATTGCTCATTGGGTCAACTTTGGTCAGGCGGCTGCCAAGAATCGACTC GGCTTCTACGGCTGGCTCGTGGCCAACTTTGCGTCCGGGCCAGGATGGACGGGATACGTCATGCTCATTGCTCTG ATGGGCATGGTGGCGACTTCGGTAGAGAAGCCGCGTCGGGCCAACTACGAGCGGTTCTGGTATACCCATCACTTC TTCATCATCTTCTTCCTCTTCTGGTCCTTTCACGGCGCTTTCTGCATGATTCAGCCTGACGTTGCTCCCTTTTGC GTCGGGACTGGCGCCTCGGCCATTGGAGTCTTCTGGCAGTATTGGATGTACAGCGGTTTCCTCTACCTGGGAGAG CGCATCGCCCGTGAGATTCGCGGTCGTCATTACACCGTCATCTCCAAGGTCATCCAGCATCCGAGCCAGGTGTGC GAGATTCAGATCAAAAAGGAGCACACCAAGACGCGGGCCGGACAGTACATCTTCCTATGCTGCCCGGCCGTCTCT ATCTGGCAGTACCATCCCTTTACACTGACGAGCGCCCCCGAGGAGGATTACATCTCGGTTCATGTCCGCTGTCAG GGAGACTTTACCATGGCGCTGTCGCAGGCTCTCGGGTGCGAATGGGGGAAGAAGGAGTCGTCGTCGTCTTCTTCT TCCTCTTCTACCGAGGATACGAGCAAGGTGGTGGGCGTCGAGGCGGAGAATACAGTCGTCGATCCGGCGCTGAGA CGCGTCCTGCCGCGCGTTTACATCGACGGACCCTTTGGTTCCGCGTCCGAGGATGTCTTCAAGTACGAGGTTTCG ATTCTGGTCGGCGCCGGCATAGGCGTTACGCCTTTTGCCTCGATCCTCAAGTCCATCTGGTACCGGATGAACTAC CCGACGACGAAGACGCGACTGTCAAAGGTCTACTTCTTCTGGATCTGCCGCGACTTTGGCTCCTTCGAGTGGTTC CGCTCCCTATTGCTAGCCGTCGAAGCGCAAGACGTCGAGCACCGAATCGAGATCCATACCTATCTGACAGCCAAG ATCAAGGCCGACGACGCGACCAACATCATGATCAACGACGCAAACGCCGACAAGGATACCATTACCGGTCTGCGC AGCCCTACGAGCTTCGGCCGGCCGAACTGGGATATGATCTTTCGGGGGATCCGCAAGTTGCACGCTCCCGGCGAG GCTGGCGTTTTCTTCTGCGGGCCAAAGGGGTTGGGTAGCTCGTTGCACGTCTACTGCAATAAGTATACGGAGCCT GGCTTCTCTTTCGTCTGGGGCAAGGAGAACTTTTAA |
| Gene | >Ophcf2|03137 ATGGATCCTTTCAACGACGTCGAGTACGAGTATGACTATGAGAAGCCGTCGGAGAGGTCGAGATGGTCGCCTTTG ACGCGGATGCTGTTGTCGGGGGAGATGACGCAGGAGAAGCAGTCGTCGCTGACGACGAGGGAAAAGTTTGACCGC TGGATGATCAACGAGGGGTATCGGCGCATGTGAGTTCTCGAGGAGTTGATGGGCGGTTGTTGGTGTTGGTTGGGG CTGACTGGGTTGTTTAGCTTCGTCTTCGTCTTCATGCTTGCTCACGCCCTCATCTTCGCATTTGCTTCGGTTCAT TACGCGCTCAAGGATAGTCTTCAGGGCGCGAGAGATACGTTTGGTGTGACTTACATCATCGCCCGGTCTTCGGCT GTGGTGCTGCACGTTGACGTTGGCATCGTCCTTTTTCCCGTCTGCCGGACGCTCATCTCGTTACTTCGACAGACG CCGCTCAACGGGATCATCCAGTTCGATAAGAACATTACCTTTCACATCATGACGGCCTGGTCCATCGTCTTCTGG TCTTGGGTCCATACCATTGCTCATTGGGTCAACTTTGGTCAGGCGGCTGCCAAGAATCGACTCGGCTTCTACGGC TGGCTCGTGGCCAACTTTGCGTCCGGGCCAGGATGGACGGGATACGTCATGCTCATTGCTCTGATGGGCATGGTG GCGACTTCGGTAGAGAAGCCGCGTCGGGCCAACTACGAGCGGTTCTGGTATACCCATCACTTCTTCATCATCTTC TTCCTCTTCTGGTCCTTTCACGGCGCTTTCTGCATGATTCAGCCTGACGTTGCTCCCTTTTGCGTCGGGACTGGC GCCTCGGCCATTGGAGTCTTCTGGCAGTATTGGATGTACAGCGGTTTCCTCTACCTGGGAGAGCGCATCGCCCGT GAGATTCGCGGTCGTCATTACACCGTCATCTCCAAGGTCATCCAGCATCCGAGCCAGGTGTGCGAGATTCAGATC AAAAAGGAGCACACCAAGACGCGGGCCGGACAGTACATCTTCCTATGCTGCCCGGCCGTCTCTATCTGGCAGTAC CATCCCTTTACACTGACGAGCGCCCCCGAGGAGGATTACATCTCGGTTCATGTCCGCTGTCAGGGAGACTTTACC ATGGCGCTGTCGCAGGCTCTCGGGTGCGAATGGGGGAAGAAGGAGTCGTCGTCGTCTTCTTCTTCCTCTTCTACC GAGGATACGAGCAAGGTGGTGGGCGTCGAGGCGGAGAATACAGTCGTCGATCCGGCGCTGAGACGCGTCCTGCCG CGCGTTTACATCGACGGACCCTTTGGTTCCGCGTCCGAGGATGTCTTCAAGTACGAGGTTTCGATTCTGGTCGGC GCCGGCATAGGCGTTACGCCTTTTGCCTCGATCCTCAAGTCCATCTGGTACCGGATGAACTACCCGACGACGAAG ACGCGACTGTCAAAGGTCTACTTCTTCTGGATCTGCCGCGACTTTGGCTCCTTCGAGTGGTTCCGCTCCCTATTG CTAGCCGTCGAAGCGCAAGACGTCGAGCACCGAATCGAGATCCATACCTATCTGACAGCCAAGATCAAGGCCGAC GACGCGACCAACATCATGATCAACGACGCAAACGCCGACAAGGATACCATTACCGGTCTGCGCAGCCCTACGAGC TTCGGCCGGCCGAACTGGGATATGATCTTTCGGGGGATCCGCAAGTTGCACGCTCCCGGCGAGGCTGGCGTTTTC TTCTGCGGGCCAAAGGGGTTGGGTAGCTCGTTGCACGTCTACTGCAATAAGTATACGGAGCCTGGGTGAGTTCCG GATCCCCTCCTTTTTGGTGTTTGCTGCGTTGTTTGTTGTTTGTCTCGCCTGGCTGACCGTCTTTCTTTTAGCTTC TCTTTCGTCTGGGGCAAGGAGAACTTTTAA |