© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03125 |
| Gene name | |
| Location | scaffold_03:714970..717049 |
| Strand | - |
| Gene length (bp) | 2079 |
| Transcript length (bp) | 2010 |
| Coding sequence length (bp) | 2010 |
| Protein length (aa) | 670 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00664 | ABC_membrane | ABC transporter transmembrane region | 1.5E-37 | 92 | 369 |
| PF00005 | ABC_tran | ABC transporter | 8.1E-33 | 433 | 582 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0140359 | ABC-type transporter activity | Yes |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005215 | transporter activity | No |
| GO:0022804 | active transmembrane transporter activity | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0043168 | anion binding | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0051179 | localization | No |
| GO:0140657 | ATP-dependent activity | No |
| GO:0003674 | molecular_function | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0015399 | primary active transmembrane transporter activity | No |
| GO:0043167 | ion binding | No |
| GO:0008150 | biological_process | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 89 | 111 | 22 |
| 2 | 126 | 148 | 22 |
| 3 | 204 | 226 | 22 |
| 4 | 236 | 258 | 22 |
| 5 | 319 | 341 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03125 MASRLLFRPSLLRPSAARSLLGPRPAAVLTGCRKPLRTSAATRYRASSGRDPLSGPDKSAAQQRRADWAIVRDMS RYLWPRRDGLGTKFRVGLALALLVGAKLLNVQVPFYFKSIVDAMDVDAAALGGTATAVAGSLILAYGAARVGASV FQEIRNAVFASVAQKAIRDVARNVLDHLHRLDLGFHLARQTGGLTRAIDRGTKGISFLLTSIVFHILPTALEVTM VCGILTWQYGLQYAAITALTMTAYTAFTIWTTAWRTRFRRQANAADNRASTTAVDSLLNYEAVKHFNNERYEVGR YDAALAEYERSSIKVATSLALLNIGQGVIFSAALTAMMLLAADGVSAGQLTVGDLVMINQLVFQLSVPLNFLGSV YRELRQSLLDMDTLFALKRIPIEVADRPGARTLSLTTGGGEIRFENVRFGYHPDRPILDGLSLTIPAGSKVAVVG PSGCGKSTLLRLLFRFYDVEGGRILIDGHDVRHLTLESLRASIGVVPQDTPLFNASVEDNMRYGRVDASRDEVVD AAKRAHVHAAISKFPDGYDTMVGERGLMISGGEKQRLAVTRVLLKDPPLLFFDEATSALDTHTEQALLASINGIL REKRRTSVFVAHRLRTILDADVIVVLKDGRVAEKGTHRELVERGGVYAELWNVQENLFEADGTGTKGGG* |
| Coding | >Ophcf2|03125 ATGGCCTCTCGCCTGCTATTCCGCCCGTCGCTGCTGCGCCCCTCGGCGGCGCGGTCGCTGCTGGGGCCGAGGCCT GCCGCTGTCTTGACGGGCTGTCGCAAGCCTCTACGGACTTCGGCTGCTACCCGGTATCGAGCTTCGTCTGGGAGG GATCCGCTCTCTGGACCGGACAAGTCGGCGGCTCAGCAGCGGAGGGCTGACTGGGCTATTGTCCGCGATATGTCG CGATACCTGTGGCCTCGACGCGACGGCCTCGGCACCAAGTTCCGCGTTGGGTTGGCGCTGGCGCTTCTTGTGGGC GCCAAGCTTCTCAACGTGCAGGTTCCCTTTTACTTCAAGTCCATCGTCGATGCCATGGACGTCGATGCCGCTGCT CTCGGGGGCACCGCTACGGCCGTGGCTGGCAGCCTGATACTGGCATACGGTGCGGCTCGCGTCGGCGCCTCGGTC TTTCAGGAGATTCGAAACGCCGTCTTCGCGTCCGTGGCGCAAAAGGCCATTCGCGACGTGGCTCGTAACGTGCTG GATCATCTGCATCGGCTTGACCTCGGCTTCCACCTCGCTCGGCAGACGGGTGGTCTGACGCGGGCCATCGATCGC GGCACAAAGGGCATCAGCTTCCTTCTCACCAGCATCGTCTTTCATATCCTACCCACGGCGCTCGAGGTGACGATG GTGTGCGGCATCCTGACGTGGCAGTACGGCTTACAGTACGCGGCCATCACGGCGCTGACCATGACGGCCTATACG GCCTTTACCATCTGGACGACGGCCTGGCGCACGCGCTTCCGGCGACAGGCTAACGCGGCTGACAATCGGGCCTCG ACGACGGCCGTCGACTCGTTGCTCAACTACGAGGCCGTCAAGCACTTCAACAACGAGCGCTACGAGGTGGGACGG TATGACGCCGCGCTGGCCGAGTACGAACGCAGCTCGATCAAGGTAGCCACGTCGCTGGCACTGCTCAACATCGGA CAGGGCGTCATCTTCTCGGCCGCCCTGACGGCCATGATGCTGCTGGCGGCCGATGGCGTGTCCGCAGGCCAGCTC ACAGTCGGCGATCTGGTCATGATCAACCAGCTCGTCTTTCAGCTGTCGGTGCCGCTCAACTTTCTCGGCTCCGTC TACCGCGAGCTCCGTCAGTCGCTGCTCGACATGGACACGCTCTTCGCACTGAAGCGCATCCCCATCGAGGTGGCG GATCGGCCCGGGGCGCGAACGCTGTCCCTGACGACTGGCGGGGGCGAGATCCGATTCGAAAACGTTCGCTTCGGT TATCACCCGGATCGGCCCATCCTCGACGGCCTATCGCTGACGATCCCAGCCGGAAGCAAGGTGGCCGTTGTCGGT CCCAGCGGGTGCGGCAAGTCGACGCTTCTGCGCTTGTTGTTCCGCTTCTACGATGTCGAGGGCGGGCGGATCCTC ATTGACGGCCACGATGTGCGCCATCTTACGCTCGAGTCTCTGCGGGCCAGCATCGGCGTCGTTCCGCAGGACACG CCGCTCTTCAACGCGTCGGTCGAAGACAATATGCGGTACGGACGCGTCGACGCATCGCGGGACGAGGTGGTGGAC GCAGCCAAACGAGCACACGTCCACGCGGCCATATCGAAATTCCCAGACGGCTACGACACCATGGTTGGCGAGAGG GGCCTCATGATCTCGGGCGGCGAGAAGCAGCGTCTGGCGGTGACGAGGGTCCTCCTGAAGGATCCGCCGCTCCTA TTCTTCGACGAGGCGACGAGCGCGCTGGATACGCATACGGAGCAGGCGCTGCTGGCGAGCATCAATGGCATTCTG AGGGAGAAGCGGCGGACGAGCGTCTTCGTGGCGCATAGGCTGAGGACGATATTGGATGCTGACGTTATTGTGGTG TTGAAGGACGGGAGGGTGGCTGAGAAGGGGACTCATCGGGAGCTGGTCGAGAGGGGGGGGGTTTATGCCGAGTTG TGGAATGTTCAGGAGAATCTGTTCGAGGCGGACGGCACGGGGACCAAGGGGGGGGGGTAG |
| Transcript | >Ophcf2|03125 ATGGCCTCTCGCCTGCTATTCCGCCCGTCGCTGCTGCGCCCCTCGGCGGCGCGGTCGCTGCTGGGGCCGAGGCCT GCCGCTGTCTTGACGGGCTGTCGCAAGCCTCTACGGACTTCGGCTGCTACCCGGTATCGAGCTTCGTCTGGGAGG GATCCGCTCTCTGGACCGGACAAGTCGGCGGCTCAGCAGCGGAGGGCTGACTGGGCTATTGTCCGCGATATGTCG CGATACCTGTGGCCTCGACGCGACGGCCTCGGCACCAAGTTCCGCGTTGGGTTGGCGCTGGCGCTTCTTGTGGGC GCCAAGCTTCTCAACGTGCAGGTTCCCTTTTACTTCAAGTCCATCGTCGATGCCATGGACGTCGATGCCGCTGCT CTCGGGGGCACCGCTACGGCCGTGGCTGGCAGCCTGATACTGGCATACGGTGCGGCTCGCGTCGGCGCCTCGGTC TTTCAGGAGATTCGAAACGCCGTCTTCGCGTCCGTGGCGCAAAAGGCCATTCGCGACGTGGCTCGTAACGTGCTG GATCATCTGCATCGGCTTGACCTCGGCTTCCACCTCGCTCGGCAGACGGGTGGTCTGACGCGGGCCATCGATCGC GGCACAAAGGGCATCAGCTTCCTTCTCACCAGCATCGTCTTTCATATCCTACCCACGGCGCTCGAGGTGACGATG GTGTGCGGCATCCTGACGTGGCAGTACGGCTTACAGTACGCGGCCATCACGGCGCTGACCATGACGGCCTATACG GCCTTTACCATCTGGACGACGGCCTGGCGCACGCGCTTCCGGCGACAGGCTAACGCGGCTGACAATCGGGCCTCG ACGACGGCCGTCGACTCGTTGCTCAACTACGAGGCCGTCAAGCACTTCAACAACGAGCGCTACGAGGTGGGACGG TATGACGCCGCGCTGGCCGAGTACGAACGCAGCTCGATCAAGGTAGCCACGTCGCTGGCACTGCTCAACATCGGA CAGGGCGTCATCTTCTCGGCCGCCCTGACGGCCATGATGCTGCTGGCGGCCGATGGCGTGTCCGCAGGCCAGCTC ACAGTCGGCGATCTGGTCATGATCAACCAGCTCGTCTTTCAGCTGTCGGTGCCGCTCAACTTTCTCGGCTCCGTC TACCGCGAGCTCCGTCAGTCGCTGCTCGACATGGACACGCTCTTCGCACTGAAGCGCATCCCCATCGAGGTGGCG GATCGGCCCGGGGCGCGAACGCTGTCCCTGACGACTGGCGGGGGCGAGATCCGATTCGAAAACGTTCGCTTCGGT TATCACCCGGATCGGCCCATCCTCGACGGCCTATCGCTGACGATCCCAGCCGGAAGCAAGGTGGCCGTTGTCGGT CCCAGCGGGTGCGGCAAGTCGACGCTTCTGCGCTTGTTGTTCCGCTTCTACGATGTCGAGGGCGGGCGGATCCTC ATTGACGGCCACGATGTGCGCCATCTTACGCTCGAGTCTCTGCGGGCCAGCATCGGCGTCGTTCCGCAGGACACG CCGCTCTTCAACGCGTCGGTCGAAGACAATATGCGGTACGGACGCGTCGACGCATCGCGGGACGAGGTGGTGGAC GCAGCCAAACGAGCACACGTCCACGCGGCCATATCGAAATTCCCAGACGGCTACGACACCATGGTTGGCGAGAGG GGCCTCATGATCTCGGGCGGCGAGAAGCAGCGTCTGGCGGTGACGAGGGTCCTCCTGAAGGATCCGCCGCTCCTA TTCTTCGACGAGGCGACGAGCGCGCTGGATACGCATACGGAGCAGGCGCTGCTGGCGAGCATCAATGGCATTCTG AGGGAGAAGCGGCGGACGAGCGTCTTCGTGGCGCATAGGCTGAGGACGATATTGGATGCTGACGTTATTGTGGTG TTGAAGGACGGGAGGGTGGCTGAGAAGGGGACTCATCGGGAGCTGGTCGAGAGGGGGGGGGTTTATGCCGAGTTG TGGAATGTTCAGGAGAATCTGTTCGAGGCGGACGGCACGGGGACCAAGGGGGGGGGGTAG |
| Gene | >Ophcf2|03125 ATGGCCTCTCGCCTGCTATTCCGCCCGTCGCTGCTGCGCCCCTCGGCGGCGCGGTCGCTGCTGGGGCCGAGGCCT GCCGCTGTCTTGACGGGCTGTCGCAAGCCTCTACGGACTTCGGCTGCTACCCGGTATCGAGCTTCGTCTGGGAGG GATCCGCTCTCTGGACCGGACAAGTCGGCGGCTCAGCAGCGGAGGGCTGACTGGGCTATTGTCCGCGATATGTCG CGATACCTGTGGCCTCGACGCGACGGCCTCGGCACCAAGTTCCGCGTTGGGTTGGCGCTGGCGCTTCTTGTGGGC GCCAAGCTTCTCAACGTGCAGGTTCCCTTTTACTTCAAGTCCATCGTCGATGCCATGGACGTCGATGCCGCTGCT CTCGGGGGCACCGCTACGGCCGTGGCTGGCAGCCTGATACTGGCATACGGTGCGGCTCGCGTCGGCGCCTCGGTC TTTCAGGAGATTCGAAACGCCGTCTTCGCGTCCGTGGCGCAAAAGGCCATTCGCGACGTGGCTCGTAACGTGCTG GATCATCTGCATCGGCTTGACCTCGGCTTCCACCTCGCTCGGCAGACGGGTGGTCTGACGCGGGCCATCGATCGC GGCACAAAGGGCATCAGCTTCCTTCTCACCAGCATCGTCTTTCATATCCTACCCACGGCGCTCGAGGTGACGATG GTGTGCGGCATCCTGACGTGGCAGTACGGCTTACAGTACGCGGCCATCACGGCGCTGACCATGACGGCCTATACG GCCTTTACCATCTGGACGACGGCCTGGCGCACGCGCTTCCGGCGACAGGCTAACGCGGCTGACAATCGGGCCTCG ACGACGGCCGTCGACTCGTTGCTCAACTACGAGGCCGTCAAGCACTTCAACAACGAGCGCTACGAGGTGGGACGG TATGACGCCGCGCTGGCCGAGTACGAACGCAGCTCGATCAAGGTAGCCACGTCGCTGGCACTGCTCAACATCGGA CAGGGCGTCATCTTCTCGGCCGCCCTGACGGCCATGATGCTGCTGGCGGCCGATGGCGTGTCCGCAGGCCAGCTC ACAGTCGGCGATCTGGTCATGATCAACCAGCTCGTCTTTCAGCTGTCGGTGCCGCTCAACTTTCTCGGCTCCGTC TACCGCGAGCTCCGTCAGTCGCTGCTCGACATGGACACGCTCTTCGCACTGAAGCGCATCCCCATCGAGGTGGCG GATCGGCCCGGGGCGCGAACGCTGTCCCTGACGACTGGCGGGGGCGAGATCCGATTCGAAAACGTTCGCTTCGGT TATCACCCGGATCGGCCCATCCTCGACGGCCTATCGCTGACGATCCCAGCCGGAAGCAAGGTGGCCGTTGTCGGT CCCAGCGGGTGCGGCAAGTCGACGCTTCTGCGCTTGTTGTTCCGCTTCTACGATGTCGAGGGCGGGCGGATCCTC ATTGACGGCCACGATGTGCGCCATCTTACGCTCGAGTCTCTGCGGGCCAGCATCGGCGTCGTTCCGCAGGACACG CCGCTCTTCAACGCGTCGGTCGAAGACAATATGCGGTACGGACGCGTCGACGCATCGCGGGACGAGGTGGTGGAC GCAGCCAAACGAGCACACGTCCACGCGGCCATATCGAAATTCCCAGACGGCTACGACACCATGGTTGGCGAGAGG GGCCTCATGATCTCGGGCGGCGAGAAGCAGCGTCTGGCGGTGACGAGGGTCCTCCTGAAGGATCCGCCGCTCCTA TTCTTCGACGAGGCGACGAGCGCGCTGGATACGCATACGGAGCAGGCGCTGCTGGCGAGCATCAATGGCATTCTG AGGGAGAAGCGGCGGACGAGCGTCTTCGTGGCGCATAGGCTGAGGACGATATTGGATGCTGACGTTATTGTGGTG TTGAAGGACGGGAGGGTGGCTGAGAAGGGGACTCATCGGGAGCTGGTCGAGAGGGGGGGGGTTTATGCCGAGTTG TGGAATGGTGAGTTTTTTTTTTTTTCTTTTTCTCTCACTCCCCGTATGATATGATTCTTTGCTGACTTGATGGCA GTTCAGGAGAATCTGTTCGAGGCGGACGGCACGGGGACCAAGGGGGGGGGGTAG |