Protein ID | Ophcf2|03122 |
Gene name | |
Location | scaffold_03:710274..711593 |
Strand | + |
Gene length (bp) | 1319 |
Transcript length (bp) | 1101 |
Coding sequence length (bp) | 1101 |
Protein length (aa) | 367 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF03151 | TPT | Triose-phosphate Transporter family | 8.8E-25 | 19 | 304 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 33 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 15 | 34 | 19 |
2 | 41 | 63 | 22 |
3 | 83 | 105 | 22 |
4 | 110 | 132 | 22 |
5 | 137 | 156 | 19 |
6 | 161 | 183 | 22 |
7 | 198 | 220 | 22 |
8 | 232 | 254 | 22 |
9 | 259 | 281 | 22 |
10 | 333 | 355 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|03122 MDVEKQVPVGGRGLHPSLHIVNWMLWSNLTVLFNKAIIDTGFRYPILLTCWHLIFASIATQLLARYTPLLDSRHS LAMTSRLYLPTLLPIGIFYSGSLVCSNLVYLHLSVAFTQMLKSAAPVVALFVAWAWRLQEPSVGALVNMLVMMAG VGMASVGEVRFSLVGFLLQLAGTIFEVIRLAMIQVMLSNKGLKMEPLVGLYYYAPICAAMNVFVAIPTELPYFRR EHLTPWLAGVLVLNALTAFMLNIASVFLIGKTSGLTMTMAGILKNMLLIVASVLIWQTRITLLQAAGYSLALAGL VYYSAGREVLARARQVSASAAAVLAEWCLDNRVGIIVLTGCASLVMVYGLLRLYGAAAGELVLSMA* |
Coding | >Ophcf2|03122 ATGGACGTCGAAAAGCAAGTGCCTGTCGGTGGCAGGGGCTTGCATCCGAGTCTTCACATTGTGAACTGGATGCTG TGGTCGAATCTGACGGTGCTCTTCAACAAGGCCATCATCGACACTGGCTTCAGATATCCTATACTGCTCACCTGC TGGCATCTCATCTTCGCCTCCATTGCCACGCAGCTTCTGGCACGATACACGCCGCTCCTCGACTCGCGTCACTCC CTAGCCATGACGAGTCGTCTATATCTTCCGACGCTGTTGCCCATCGGCATCTTCTACAGCGGCTCGCTCGTGTGT TCCAACCTCGTCTACCTCCATCTGTCAGTGGCCTTTACCCAGATGCTCAAGTCGGCCGCGCCCGTCGTCGCCTTG TTCGTAGCCTGGGCCTGGCGCCTCCAGGAGCCGTCGGTCGGGGCGCTGGTCAATATGCTCGTCATGATGGCCGGG GTGGGTATGGCTTCCGTCGGAGAGGTACGCTTCTCTCTGGTCGGCTTCCTCTTACAGCTCGCCGGCACCATCTTC GAGGTCATCCGTCTGGCCATGATTCAGGTCATGCTCAGCAACAAGGGGCTCAAGATGGAGCCGCTCGTCGGACTG TATTACTATGCGCCGATTTGCGCGGCCATGAACGTCTTTGTCGCTATCCCCACCGAGCTGCCCTACTTTCGACGG GAGCATCTGACGCCGTGGCTGGCAGGGGTGTTGGTCCTCAATGCCCTGACGGCGTTTATGCTCAATATTGCCAGC GTCTTTCTGATTGGAAAGACGTCTGGCTTGACGATGACGATGGCGGGCATCCTGAAGAACATGCTGCTCATCGTC GCCTCGGTCCTCATCTGGCAAACGCGCATCACGCTGCTACAGGCTGCGGGCTATAGCCTCGCCCTGGCCGGTCTG GTCTACTACTCAGCGGGCCGCGAAGTCCTGGCACGCGCACGACAGGTCTCCGCCAGCGCGGCCGCAGTGCTAGCG GAGTGGTGTCTTGACAACAGGGTCGGCATCATCGTCCTCACCGGCTGCGCGTCCCTAGTCATGGTCTACGGACTT TTACGGCTGTACGGCGCGGCGGCGGGCGAGCTGGTCTTGTCAATGGCGTGA |
Transcript | >Ophcf2|03122 ATGGACGTCGAAAAGCAAGTGCCTGTCGGTGGCAGGGGCTTGCATCCGAGTCTTCACATTGTGAACTGGATGCTG TGGTCGAATCTGACGGTGCTCTTCAACAAGGCCATCATCGACACTGGCTTCAGATATCCTATACTGCTCACCTGC TGGCATCTCATCTTCGCCTCCATTGCCACGCAGCTTCTGGCACGATACACGCCGCTCCTCGACTCGCGTCACTCC CTAGCCATGACGAGTCGTCTATATCTTCCGACGCTGTTGCCCATCGGCATCTTCTACAGCGGCTCGCTCGTGTGT TCCAACCTCGTCTACCTCCATCTGTCAGTGGCCTTTACCCAGATGCTCAAGTCGGCCGCGCCCGTCGTCGCCTTG TTCGTAGCCTGGGCCTGGCGCCTCCAGGAGCCGTCGGTCGGGGCGCTGGTCAATATGCTCGTCATGATGGCCGGG GTGGGTATGGCTTCCGTCGGAGAGGTACGCTTCTCTCTGGTCGGCTTCCTCTTACAGCTCGCCGGCACCATCTTC GAGGTCATCCGTCTGGCCATGATTCAGGTCATGCTCAGCAACAAGGGGCTCAAGATGGAGCCGCTCGTCGGACTG TATTACTATGCGCCGATTTGCGCGGCCATGAACGTCTTTGTCGCTATCCCCACCGAGCTGCCCTACTTTCGACGG GAGCATCTGACGCCGTGGCTGGCAGGGGTGTTGGTCCTCAATGCCCTGACGGCGTTTATGCTCAATATTGCCAGC GTCTTTCTGATTGGAAAGACGTCTGGCTTGACGATGACGATGGCGGGCATCCTGAAGAACATGCTGCTCATCGTC GCCTCGGTCCTCATCTGGCAAACGCGCATCACGCTGCTACAGGCTGCGGGCTATAGCCTCGCCCTGGCCGGTCTG GTCTACTACTCAGCGGGCCGCGAAGTCCTGGCACGCGCACGACAGGTCTCCGCCAGCGCGGCCGCAGTGCTAGCG GAGTGGTGTCTTGACAACAGGGTCGGCATCATCGTCCTCACCGGCTGCGCGTCCCTAGTCATGGTCTACGGACTT TTACGGCTGTACGGCGCGGCGGCGGGCGAGCTGGTCTTGTCAATGGCGTGA |
Gene | >Ophcf2|03122 ATGGACGTCGAAAAGCAAGTGCCTGTCGGTGGCAGGGGCTTGCATCCGAGTCTTCACATTGTGTTCGTTGAGAGC CTGGTTTCCTTGTTAGACGAGGAGGGTATTCGCTGACGGCGTAGGAACTGGATGCTGTGGTCGAATCTGACGGTG CTCTTCAACAAGGCCATCATCGACACTGGCTTCAGTAAGTTTGCGGGAGGATTGATGGAAGCGGCTAACGTCTTC AACAGGATATCGTCCGTCAGCTCTCTTGACTCCATGTCTATGCGATGGAGGCTGACTCTAACAGCTATACTGCTC ACCTGCTGGCATCTCATCTTCGCCTCCATTGCCACGCAGCTTCTGGCACGATACACGCCGCTCCTCGACTCGCGT CACTCCCTAGCCATGACGAGTCGTCTATATCTTCCGACGCTGTTGCCCATCGGCATCTTCTACAGCGGCTCGCTC GTGTGTTCCAACCTCGTCTACCTCCATCTGTCAGTGGCCTTTACCCAGATGCTCAAGTCGGCCGCGCCCGTCGTC GCCTTGTTCGTAGCCTGGGCCTGGCGCCTCCAGGAGCCGTCGGTCGGGGCGCTGGTCAATATGCTCGTCATGATG GCCGGGGTGGGTATGGCTTCCGTCGGAGAGGTACGCTTCTCTCTGGTCGGCTTCCTCTTACAGCTCGCCGGCACC ATCTTCGAGGTCATCCGTCTGGCCATGATTCAGGTCATGCTCAGCAACAAGGGGCTCAAGATGGAGCCGCTCGTC GGACTGTATTACTATGCGCCGATTTGCGCGGCCATGAACGTCTTTGTCGCTATCCCCACCGAGCTGCCCTACTTT CGACGGGAGCATCTGACGCCGTGGCTGGCAGGGGTGTTGGTCCTCAATGCCCTGACGGCGTTTATGCTCAATATT GCCAGCGTCTTTCTGGTGAGTCGGATGACTTGGTTTCCACCTGTCGTGTCTCTGACGTGGGTATGTGTGCATATA AGATTGGAAAGACGTCTGGCTTGACGATGACGATGGCGGGCATCCTGAAGAACATGCTGCTCATCGTCGCCTCGG TCCTCATCTGGCAAACGCGCATCACGCTGCTACAGGCTGCGGGCTATAGCCTCGCCCTGGCCGGTCTGGTCTACT ACTCAGCGGGCCGCGAAGTCCTGGCACGCGCACGACAGGTCTCCGCCAGCGCGGCCGCAGTGCTAGCGGAGTGGT GTCTTGACAACAGGGTCGGCATCATCGTCCTCACCGGCTGCGCGTCCCTAGTCATGGTCTACGGACTTTTACGGC TGTACGGCGCGGCGGCGGGCGAGCTGGTCTTGTCAATGGCGTGA |