© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03085 |
| Gene name | |
| Location | scaffold_03:616497..618266 |
| Strand | - |
| Gene length (bp) | 1769 |
| Transcript length (bp) | 1614 |
| Coding sequence length (bp) | 1614 |
| Protein length (aa) | 538 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02133 | Transp_cyt_pur | Permease for cytosine/purines, uracil, thiamine, allantoin | 2.9E-146 | 18 | 471 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 26 | 48 | 22 |
| 2 | 58 | 80 | 22 |
| 3 | 114 | 133 | 19 |
| 4 | 153 | 175 | 22 |
| 5 | 182 | 204 | 22 |
| 6 | 259 | 281 | 22 |
| 7 | 314 | 336 | 22 |
| 8 | 351 | 373 | 22 |
| 9 | 382 | 404 | 22 |
| 10 | 431 | 453 | 22 |
| 11 | 466 | 488 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03085 MPGLSSSQLMVNNHDLKPVERQRRLWGTWNFVGFWVADSFNINTWMISSSMITAGLSWWQAWICIWVGYSISGAL IVSTGRIGAVYHIGFPVANRASFGTWGSLWPVFNRAAMACVWYGLQSYIGGQVVYLMIRAMSKSWDRDRMPGPFD TGVTSTPEFVSFVIFWLCSLPALWYPVHKIRHLFTFKAYLVPPAALGFLAWAIVRAGGAGPILRQPSSITGSELA WEMVRGIMTSIANFSTLIVNDCDFTRFARKPVDALWSQLLGIPLCFAITSFIGIIVSSSSTVIYDESIWNPVHLL GRFLDDGESGGSRFGVFFIAFAFALAQLGTNIAANSVSAGSDLTALLPRYINIRRGGYICAVIGLAMCPYSFLTS ANRFTTYLSAYSVFLSSIAGVIITDYYFVRRGFLDVGELYHGRRTGTYFYNWGFNFRAYAAYISGILINVVGFAG AVGRDVPKAATYLYRLDFFCGLFVSSAVYWLLCRLFPVPGTSAHWMEVGEAIEESVEEGNRVVSDGSQERAEQDG GEAALSGLKSYK* |
| Coding | >Ophcf2|03085 ATGCCGGGCCTTTCGTCGTCGCAGCTCATGGTCAACAATCATGATCTCAAGCCGGTTGAGAGGCAGAGACGGCTG TGGGGGACTTGGAACTTTGTTGGCTTCTGGGTGGCCGACTCGTTCAATATCAATACTTGGATGATTTCGTCGTCG ATGATTACGGCTGGGTTGTCGTGGTGGCAGGCTTGGATCTGCATCTGGGTCGGGTATTCCATCTCGGGAGCCCTC ATCGTTTCGACTGGGAGGATCGGGGCCGTCTATCACATTGGCTTTCCCGTTGCGAATCGGGCTTCGTTTGGCACC TGGGGCAGTCTGTGGCCCGTCTTTAACCGTGCTGCTATGGCTTGCGTCTGGTATGGCCTGCAGAGCTACATCGGA GGTCAGGTCGTGTACTTGATGATCCGGGCCATGAGCAAGTCATGGGACCGGGACCGGATGCCCGGCCCGTTCGAC ACCGGAGTCACCAGCACGCCCGAGTTCGTCTCCTTCGTCATCTTCTGGTTGTGCTCGCTGCCGGCGCTGTGGTAC CCCGTTCATAAGATCCGTCATCTCTTCACCTTCAAGGCATACCTCGTGCCGCCCGCCGCCCTTGGCTTCCTCGCC TGGGCCATCGTCCGGGCCGGCGGTGCTGGGCCTATTCTCCGGCAGCCGAGTTCGATTACGGGCAGTGAGCTGGCG TGGGAGATGGTCCGGGGCATCATGACGTCCATTGCCAACTTTTCGACCCTCATCGTCAACGACTGTGACTTTACG CGGTTTGCGCGGAAGCCGGTTGATGCCTTGTGGTCGCAGCTATTGGGTATCCCTCTTTGCTTCGCCATCACGTCC TTTATCGGCATCATAGTTTCGTCGTCGTCGACCGTCATCTACGACGAGTCCATTTGGAATCCGGTACATCTGCTG GGCCGCTTCCTTGACGATGGTGAGAGCGGCGGCTCGCGTTTTGGCGTCTTCTTCATTGCTTTTGCCTTTGCTCTC GCTCAGCTCGGCACCAATATAGCGGCCAACTCCGTCTCAGCCGGCTCGGATCTCACGGCTCTGCTGCCTCGGTAT ATCAACATTCGCCGCGGTGGCTATATTTGTGCTGTCATCGGGCTGGCCATGTGTCCCTACAGCTTCCTGACCAGC GCCAACCGGTTCACGACCTATCTATCGGCCTACAGCGTCTTTCTCAGCTCCATCGCTGGCGTCATCATCACCGAC TACTACTTTGTTCGTAGGGGCTTCCTCGATGTCGGCGAGCTGTATCACGGGCGTCGTACGGGGACTTACTTTTAC AATTGGGGCTTCAACTTTCGCGCATACGCCGCTTACATCTCCGGTATCCTCATCAACGTCGTCGGCTTTGCTGGT GCCGTCGGCCGCGACGTTCCCAAGGCGGCAACTTATCTTTATCGCTTGGATTTCTTTTGCGGTCTGTTTGTGTCG TCGGCTGTGTATTGGCTTCTGTGTCGGTTGTTTCCTGTCCCGGGGACGAGCGCGCATTGGATGGAGGTGGGCGAG GCCATCGAAGAGTCTGTGGAAGAGGGGAATCGCGTTGTCTCGGATGGGAGTCAGGAGAGGGCAGAGCAGGATGGA GGTGAGGCTGCCTTGTCGGGATTAAAGTCGTACAAGTGA |
| Transcript | >Ophcf2|03085 ATGCCGGGCCTTTCGTCGTCGCAGCTCATGGTCAACAATCATGATCTCAAGCCGGTTGAGAGGCAGAGACGGCTG TGGGGGACTTGGAACTTTGTTGGCTTCTGGGTGGCCGACTCGTTCAATATCAATACTTGGATGATTTCGTCGTCG ATGATTACGGCTGGGTTGTCGTGGTGGCAGGCTTGGATCTGCATCTGGGTCGGGTATTCCATCTCGGGAGCCCTC ATCGTTTCGACTGGGAGGATCGGGGCCGTCTATCACATTGGCTTTCCCGTTGCGAATCGGGCTTCGTTTGGCACC TGGGGCAGTCTGTGGCCCGTCTTTAACCGTGCTGCTATGGCTTGCGTCTGGTATGGCCTGCAGAGCTACATCGGA GGTCAGGTCGTGTACTTGATGATCCGGGCCATGAGCAAGTCATGGGACCGGGACCGGATGCCCGGCCCGTTCGAC ACCGGAGTCACCAGCACGCCCGAGTTCGTCTCCTTCGTCATCTTCTGGTTGTGCTCGCTGCCGGCGCTGTGGTAC CCCGTTCATAAGATCCGTCATCTCTTCACCTTCAAGGCATACCTCGTGCCGCCCGCCGCCCTTGGCTTCCTCGCC TGGGCCATCGTCCGGGCCGGCGGTGCTGGGCCTATTCTCCGGCAGCCGAGTTCGATTACGGGCAGTGAGCTGGCG TGGGAGATGGTCCGGGGCATCATGACGTCCATTGCCAACTTTTCGACCCTCATCGTCAACGACTGTGACTTTACG CGGTTTGCGCGGAAGCCGGTTGATGCCTTGTGGTCGCAGCTATTGGGTATCCCTCTTTGCTTCGCCATCACGTCC TTTATCGGCATCATAGTTTCGTCGTCGTCGACCGTCATCTACGACGAGTCCATTTGGAATCCGGTACATCTGCTG GGCCGCTTCCTTGACGATGGTGAGAGCGGCGGCTCGCGTTTTGGCGTCTTCTTCATTGCTTTTGCCTTTGCTCTC GCTCAGCTCGGCACCAATATAGCGGCCAACTCCGTCTCAGCCGGCTCGGATCTCACGGCTCTGCTGCCTCGGTAT ATCAACATTCGCCGCGGTGGCTATATTTGTGCTGTCATCGGGCTGGCCATGTGTCCCTACAGCTTCCTGACCAGC GCCAACCGGTTCACGACCTATCTATCGGCCTACAGCGTCTTTCTCAGCTCCATCGCTGGCGTCATCATCACCGAC TACTACTTTGTTCGTAGGGGCTTCCTCGATGTCGGCGAGCTGTATCACGGGCGTCGTACGGGGACTTACTTTTAC AATTGGGGCTTCAACTTTCGCGCATACGCCGCTTACATCTCCGGTATCCTCATCAACGTCGTCGGCTTTGCTGGT GCCGTCGGCCGCGACGTTCCCAAGGCGGCAACTTATCTTTATCGCTTGGATTTCTTTTGCGGTCTGTTTGTGTCG TCGGCTGTGTATTGGCTTCTGTGTCGGTTGTTTCCTGTCCCGGGGACGAGCGCGCATTGGATGGAGGTGGGCGAG GCCATCGAAGAGTCTGTGGAAGAGGGGAATCGCGTTGTCTCGGATGGGAGTCAGGAGAGGGCAGAGCAGGATGGA GGTGAGGCTGCCTTGTCGGGATTAAAGTCGTACAAGTGA |
| Gene | >Ophcf2|03085 ATGCCGGGCCTTTCGTCGTCGCAGCTCATGGTCTGGGCGCGTTTTGGATGGTGATGTGAGGGTTGAGAGGCTGAC GCGTGGCAGGTCAACAATCATGATCTCAAGCCGGTTGAGAGGCAGAGACGGCTGTGGGGGACTTGGAACTTTGTT GGCTTCTGGGTGGCCGACTCGTTCAATATCAATACTTGGATGATTTCGTCGTCGATGATTACGGCTGGGTTGTCG TGGTGGCAGGCTTGGATCTGCATCTGGGTCGGGTATTCCATCTCGGGAGCCCTCATCGTTTCGACTGGGAGGATC GGGGCCGTCTATCACATTGGCTTTCCCGTTGCGAATCGGGCTTCGTTTGGCACCTGGGGCAGTCTGTGGCCCGTC TTTAACCGTGCTGCTATGGGTGAGCGTCTTCAGGGTTGTCTCTCTTTTGCGGCTTTGTCGGCTAACCGCTGCAGC TTGCGTCTGGTGAGTGAAGTCGCTTGTTGCGCCCTATGGCTAACATTGCAGACAGGTATGGCCTGCAGAGCTACA TCGGAGGTCAGGTCGTGTACTTGATGATCCGGGCCATGAGCAAGTCATGGGACCGGGACCGGATGCCCGGCCCGT TCGACACCGGAGTCACCAGCACGCCCGAGTTCGTCTCCTTCGTCATCTTCTGGTTGTGCTCGCTGCCGGCGCTGT GGTACCCCGTTCATAAGATCCGTCATCTCTTCACCTTCAAGGCATACCTCGTGCCGCCCGCCGCCCTTGGCTTCC TCGCCTGGGCCATCGTCCGGGCCGGCGGTGCTGGGCCTATTCTCCGGCAGCCGAGTTCGATTACGGGCAGTGAGC TGGCGTGGGAGATGGTCCGGGGCATCATGACGTCCATTGCCAACTTTTCGACCCTCATCGTCAACGACTGTGACT TTACGCGGTTTGCGCGGAAGCCGGTTGATGCCTTGTGGTCGCAGCTATTGGGTATCCCTCTTTGCTTCGCCATCA CGTCCTTTATCGGCATCATAGTTTCGTCGTCGTCGACCGTCATCTACGACGAGTCCATTTGGAATCCGGTACATC TGCTGGGCCGCTTCCTTGACGATGGTGAGAGCGGCGGCTCGCGTTTTGGCGTCTTCTTCATTGCTTTTGCCTTTG CTCTCGCTCAGCTCGGCACCAATATAGCGGCCAACTCCGTCTCAGCCGGCTCGGATCTCACGGCTCTGCTGCCTC GGTATATCAACATTCGCCGCGGTGGCTATATTTGTGCTGTCATCGGGCTGGCCATGTGTCCCTACAGCTTCCTGA CCAGCGCCAACCGGTTCACGACCTATCTATCGGCCTACAGCGTCTTTCTCAGCTCCATCGCTGGCGTCATCATCA CCGACTACTACTTTGTTCGTAGGGGCTTCCTCGATGTCGGCGAGCTGTATCACGGGCGTCGTACGGGGACTTACT TTTACAATTGGGGCTTCAACTTTCGCGCATACGCCGCTTACATCTCCGGTATCCTCATCAACGTCGTCGGCTTTG CTGGTGCCGTCGGCCGCGACGTTCCCAAGGCGGCAACTTATCTTTATCGCTTGGATTTCTTTTGCGGTCTGTTTG TGTCGTCGGCTGTGTATTGGCTTCTGTGTCGGTTGTTTCCTGTCCCGGGGACGAGCGCGCATTGGATGGAGGTGG GCGAGGCCATCGAAGAGTCTGTGGAAGAGGGGAATCGCGTTGTCTCGGATGGGAGTCAGGAGAGGGCAGAGCAGG ATGGAGGTGAGGCTGCCTTGTCGGGATTAAAGTCGTACAAGTGA |