Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03074
Gene name
Locationscaffold_03:588569..589505
Strand+
Gene length (bp)936
Transcript length (bp)768
Coding sequence length (bp)768
Protein length (aa) 256

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.5

Transmembrane Domains

Domain # Start End Length
1 2 21 19
2 36 58 22
3 71 93 22
4 175 197 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03074
MSIWLIVHLALVLLLVGVAIYEHVNSVALSLPIRSSLTIITIILPLLAALNAIFYQRLLRTASAAAQRRTLPRVL
TLQALQAILITVLATLFFSEMVPSTAGSCLLSTIWQDLFSDHDADSIRRIQDGLNCCGFNTVQDRPWPFPDHQTA
RECADTYRRDVACSRPWQSALQRNSGVEFGVILVVGLWQIASLILPLRKTLQKRDARDVERARLLTDATEAEDGC
ASRRAIDGNDAADDAGPGPESQPSRSLLEL*
Coding >Ophcf2|03074
ATGTCTATCTGGCTCATCGTTCATCTCGCACTCGTTCTTCTTCTCGTTGGCGTAGCAATCTATGAACACGTCAAC
TCTGTCGCCCTCTCTCTCCCCATTCGCTCATCCTTAACCATCATCACCATCATCCTCCCGCTCCTCGCCGCCCTC
AACGCCATCTTCTACCAACGCCTCCTCAGAACAGCCAGCGCCGCCGCCCAACGACGCACCTTACCGCGAGTCCTG
ACGCTACAAGCCCTTCAAGCCATCCTCATCACCGTCCTCGCCACTCTCTTCTTCTCCGAGATGGTGCCCTCAACT
GCCGGATCTTGTCTCCTGTCCACCATCTGGCAAGACCTCTTCAGTGACCACGACGCCGACTCCATCCGACGCATC
CAGGACGGACTCAACTGCTGCGGGTTCAACACGGTTCAGGACAGGCCGTGGCCGTTTCCGGACCATCAGACGGCT
AGGGAGTGTGCAGATACGTATAGACGGGATGTTGCCTGTTCGAGGCCATGGCAGTCGGCTCTACAGCGCAACTCG
GGCGTAGAGTTTGGGGTTATCCTCGTAGTCGGTCTCTGGCAGATTGCAAGCCTGATTCTGCCTCTGAGGAAGACA
CTGCAGAAGCGTGACGCCAGGGATGTCGAGAGAGCTCGACTTCTGACTGATGCCACGGAAGCGGAAGATGGATGT
GCTTCCAGAAGGGCGATTGATGGGAATGACGCGGCAGACGATGCTGGCCCCGGCCCCGAGAGCCAGCCGAGTCGA
TCACTGCTAGAACTGTGA
Transcript >Ophcf2|03074
ATGTCTATCTGGCTCATCGTTCATCTCGCACTCGTTCTTCTTCTCGTTGGCGTAGCAATCTATGAACACGTCAAC
TCTGTCGCCCTCTCTCTCCCCATTCGCTCATCCTTAACCATCATCACCATCATCCTCCCGCTCCTCGCCGCCCTC
AACGCCATCTTCTACCAACGCCTCCTCAGAACAGCCAGCGCCGCCGCCCAACGACGCACCTTACCGCGAGTCCTG
ACGCTACAAGCCCTTCAAGCCATCCTCATCACCGTCCTCGCCACTCTCTTCTTCTCCGAGATGGTGCCCTCAACT
GCCGGATCTTGTCTCCTGTCCACCATCTGGCAAGACCTCTTCAGTGACCACGACGCCGACTCCATCCGACGCATC
CAGGACGGACTCAACTGCTGCGGGTTCAACACGGTTCAGGACAGGCCGTGGCCGTTTCCGGACCATCAGACGGCT
AGGGAGTGTGCAGATACGTATAGACGGGATGTTGCCTGTTCGAGGCCATGGCAGTCGGCTCTACAGCGCAACTCG
GGCGTAGAGTTTGGGGTTATCCTCGTAGTCGGTCTCTGGCAGATTGCAAGCCTGATTCTGCCTCTGAGGAAGACA
CTGCAGAAGCGTGACGCCAGGGATGTCGAGAGAGCTCGACTTCTGACTGATGCCACGGAAGCGGAAGATGGATGT
GCTTCCAGAAGGGCGATTGATGGGAATGACGCGGCAGACGATGCTGGCCCCGGCCCCGAGAGCCAGCCGAGTCGA
TCACTGCTAGAACTGTGA
Gene >Ophcf2|03074
ATGTCTATCTGGCTCATCGTTCATCTCGCAGTAAGACTCAGCAGGCCACAGACGATGACTCTTGCTAATACTGGT
CGTGATAGCTCGTTCTTCTTCTCGTTGGCGTAGCAATGTTTGTTAATCACTTCAACACGGCATCCCAATAAACGT
ACTCCATGCTCACAACGTACCACAGCTATGAACACGTCAACTCTGTCGCCCTCTCTCTCCCCATTCGCTCATCCT
TAACCATCATCACCATCATCCTCCCGCTCCTCGCCGCCCTCAACGCCATCTTCTACCAACGCCTCCTCAGAACAG
CCAGCGCCGCCGCCCAACGACGCACCTTACCGCGAGTCCTGACGCTACAAGCCCTTCAAGCCATCCTCATCACCG
TCCTCGCCACTCTCTTCTTCTCCGAGATGGTGCCCTCAACTGCCGGATCTTGTCTCCTGTCCACCATCTGGCAAG
ACCTCTTCAGTGACCACGACGCCGACTCCATCCGACGCATCCAGGACGGACTCAACTGCTGCGGGTTCAACACGG
TTCAGGACAGGCCGTGGCCGTTTCCGGACCATCAGACGGCTAGGGAGTGTGCAGATACGTATAGACGGGATGTTG
CCTGTTCGAGGCCATGGCAGTCGGCTCTACAGCGCAACTCGGGCGTAGAGTTTGGGGTTATCCTCGTAGTCGGTC
TCTGGCAGGCAGGTTGACATGCTCGGTGGGAGAGAGAATGTCGCTGACAGCTGGATACAGATTGCAAGCCTGATT
CTGCCTCTGAGGAAGACACTGCAGAAGCGTGACGCCAGGGATGTCGAGAGAGCTCGACTTCTGACTGATGCCACG
GAAGCGGAAGATGGATGTGCTTCCAGAAGGGCGATTGATGGGAATGACGCGGCAGACGATGCTGGCCCCGGCCCC
GAGAGCCAGCCGAGTCGATCACTGCTAGAACTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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