Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03012
Gene name
Locationscaffold_03:421105..421430
Strand-
Gene length (bp)325
Transcript length (bp)255
Coding sequence length (bp)255
Protein length (aa) 85

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.0772 0.0444 0.8739 0.1485 0.1462 0.0047 0.0466 0.173 0.0817 0.0893

SignalP

SignalP signal predicted Location Score
Yes 1 - 23 0.99974

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup315
Change Orthofinder run
Species Protein ID
Ophiocordyceps camponoti-floridani Ophcf2|03012 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|1236
Ophiocordyceps kimflemingae Ophio5|4696
Ophiocordyceps kimflemingae Ophio5|500
Ophiocordyceps subramaniannii Hirsu2|1762
Ophiocordyceps subramaniannii Hirsu2|3584
Ophiocordyceps subramaniannii Hirsu2|8094

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03012
MKFLAIVALATVAIAAPADVEPRSSVNKCNVSSQQQVCCNGLLGCVVQILGSSCANRAYCCDSNGPSTGGLININ
GLNCVNLSG*
Coding >Ophcf2|03012
ATGAAGTTCCTCGCCATCGTCGCCCTGGCCACCGTCGCCATCGCCGCTCCCGCAGACGTCGAGCCCCGTTCCAGC
GTCAACAAGTGCAACGTCAGTTCGCAGCAGCAGGTGTGCTGCAACGGCCTCCTCGGCTGCGTCGTCCAGATCCTC
GGCTCCAGCTGCGCCAACCGCGCCTACTGCTGCGATTCCAACGGTCCTTCCACCGGCGGTCTTATCAACATCAAC
GGCCTCAACTGCGTCAACCTCTCGGGTTAG
Transcript >Ophcf2|03012
ATGAAGTTCCTCGCCATCGTCGCCCTGGCCACCGTCGCCATCGCCGCTCCCGCAGACGTCGAGCCCCGTTCCAGC
GTCAACAAGTGCAACGTCAGTTCGCAGCAGCAGGTGTGCTGCAACGGCCTCCTCGGCTGCGTCGTCCAGATCCTC
GGCTCCAGCTGCGCCAACCGCGCCTACTGCTGCGATTCCAACGGTCCTTCCACCGGCGGTCTTATCAACATCAAC
GGCCTCAACTGCGTCAACCTCTCGGGTTAG
Gene >Ophcf2|03012
ATGAAGTTCCTCGCCATCGTCGCCCTGGCCACCGTCGCCATCGCCGCTCCCGCAGACGTCGAGCCCCGTTCCAGC
GTCAACAAGTGCAACGTCAGTTCGCAGCAGCAGGTGTGCTGCAACGGCCTCCTCGGCTGCGTCGTCCAGATCCTC
GGCTCCAGCTGCGCCAACCGCGCCTACTGCTGCGATTCCAACGGTCCTTCCACCGTGAGTCTATCATCCCTCTTT
TACAAGTAAGTGTATGACCCGTCGAGATTATATGCTCACTTGTTGTAAGGGCGGTCTTATCAACATCAACGGCCT
CAACTGCGTCAACCTCTCGGGTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail