Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03010
Gene name
Locationscaffold_03:387139..388243
Strand-
Gene length (bp)1104
Transcript length (bp)987
Coding sequence length (bp)987
Protein length (aa) 329

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05739 SNARE SNARE domain 2.8E-14 272 324
PF11416 Syntaxin-5_N Syntaxin-5 N-terminal, Sly1p-binding domain 7.9E-10 2 23

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 37 0.45

Transmembrane Domains

Domain # Start End Length
1 307 326 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03010
MAAASIQDRTAEFKSVLAQAQRRQPSNKVGSQRKSLLTDSQKKAAAATATATKDGDAKAPRRSDFARKAAEIGRG
ISATMGKLEKLALLAKRRTLFDDRPVEINELTFVIKQDLSSLNQQIGALQTLSRQQHSKADQEGEHNKNVVYLLQ
GKLTDVSVNFKDVLEARTKNIQASRSRTENFISSVSQHAQPALQPSASPLYGTPNRASPAPGSDTLSLNPVGDQQ
LLMMEEAQPANTYIQQRGEAIEAIEKTIGELGSIFGQLATMVSEQSDMIQRIDANTEDVVDNVEGAQRELLKYWS
RVSSNRWLIAKMFGVLMIFFLVWVLVSG*
Coding >Ophcf2|03010
ATGGCCGCCGCATCGATTCAAGACCGAACGGCCGAGTTCAAGTCGGTGCTGGCTCAGGCCCAGCGTCGCCAGCCA
TCCAACAAGGTCGGATCGCAGCGGAAATCGCTGCTGACCGATTCACAAAAGAAGGCGGCGGCGGCGACGGCGACG
GCGACGAAAGACGGAGATGCAAAAGCGCCGCGGCGGTCCGACTTTGCCCGGAAGGCGGCCGAGATCGGACGCGGC
ATCTCGGCTACCATGGGGAAGCTGGAGAAGCTGGCGCTGCTCGCTAAGCGTCGCACGCTGTTCGACGACCGACCC
GTGGAAATCAACGAGCTCACCTTTGTCATAAAGCAAGATCTTTCGTCACTCAACCAGCAGATCGGTGCGCTGCAG
ACGCTCTCGAGACAGCAGCACTCCAAGGCAGATCAGGAGGGCGAACACAACAAAAACGTCGTCTACTTGCTGCAG
GGCAAGCTGACGGACGTGTCGGTCAACTTCAAGGATGTCCTCGAGGCGCGCACCAAGAACATCCAGGCCTCGCGC
TCACGGACCGAGAACTTTATATCATCCGTATCGCAGCATGCGCAACCGGCGCTACAGCCATCGGCCTCTCCCCTC
TACGGAACTCCCAACCGGGCATCTCCGGCGCCCGGGTCCGATACGCTCTCGCTCAACCCCGTGGGCGACCAGCAG
CTGCTGATGATGGAGGAGGCGCAGCCGGCCAACACGTACATACAGCAACGGGGAGAGGCCATCGAGGCCATCGAA
AAGACTATCGGAGAACTGGGCAGCATCTTTGGCCAACTGGCTACCATGGTGTCGGAGCAGAGCGACATGATCCAG
CGCATCGACGCCAACACCGAGGACGTGGTCGACAACGTCGAAGGTGCTCAGCGCGAGCTGCTCAAGTACTGGTCT
CGCGTATCGAGCAATCGGTGGCTGATTGCCAAGATGTTTGGCGTCTTGATGATATTCTTCCTCGTCTGGGTCCTC
GTTTCGGGATAG
Transcript >Ophcf2|03010
ATGGCCGCCGCATCGATTCAAGACCGAACGGCCGAGTTCAAGTCGGTGCTGGCTCAGGCCCAGCGTCGCCAGCCA
TCCAACAAGGTCGGATCGCAGCGGAAATCGCTGCTGACCGATTCACAAAAGAAGGCGGCGGCGGCGACGGCGACG
GCGACGAAAGACGGAGATGCAAAAGCGCCGCGGCGGTCCGACTTTGCCCGGAAGGCGGCCGAGATCGGACGCGGC
ATCTCGGCTACCATGGGGAAGCTGGAGAAGCTGGCGCTGCTCGCTAAGCGTCGCACGCTGTTCGACGACCGACCC
GTGGAAATCAACGAGCTCACCTTTGTCATAAAGCAAGATCTTTCGTCACTCAACCAGCAGATCGGTGCGCTGCAG
ACGCTCTCGAGACAGCAGCACTCCAAGGCAGATCAGGAGGGCGAACACAACAAAAACGTCGTCTACTTGCTGCAG
GGCAAGCTGACGGACGTGTCGGTCAACTTCAAGGATGTCCTCGAGGCGCGCACCAAGAACATCCAGGCCTCGCGC
TCACGGACCGAGAACTTTATATCATCCGTATCGCAGCATGCGCAACCGGCGCTACAGCCATCGGCCTCTCCCCTC
TACGGAACTCCCAACCGGGCATCTCCGGCGCCCGGGTCCGATACGCTCTCGCTCAACCCCGTGGGCGACCAGCAG
CTGCTGATGATGGAGGAGGCGCAGCCGGCCAACACGTACATACAGCAACGGGGAGAGGCCATCGAGGCCATCGAA
AAGACTATCGGAGAACTGGGCAGCATCTTTGGCCAACTGGCTACCATGGTGTCGGAGCAGAGCGACATGATCCAG
CGCATCGACGCCAACACCGAGGACGTGGTCGACAACGTCGAAGGTGCTCAGCGCGAGCTGCTCAAGTACTGGTCT
CGCGTATCGAGCAATCGGTGGCTGATTGCCAAGATGTTTGGCGTCTTGATGATATTCTTCCTCGTCTGGGTCCTC
GTTTCGGGATAG
Gene >Ophcf2|03010
ATGGCCGCCGCATCGATTCAAGACCGAACGGCCGAGTTCAAGTCGGTGCTGGCTCAGGCCCAGCGTCGCCAGCCA
TCCAACAAGGTCGGATCGCAGCGGAAATCGCTGCTGACCGATTCACAAAAGAAGGCGGCGGCGGCGACGGCGACG
GCGACGAAAGACGGAGATGCAAAAGCGCCGCGGCGGTCCGACTTTGCCCGGAAGGCGGCCGAGATCGGACGCGGC
ATCTCGGCTACCATGGGGAAGCTGGAGAAGCTGGCGCTGCGTGAGTTGGCGAGGGCGCTGCGTGAATGGGAGAGC
GCACATATACAGATACTGACTGTAGAGAGCAGTCGCTAAGCGTCGCACGCTGTTCGACGACCGACCCGTGGAAAT
CAACGAGCTCACCTTTGTCATAAAGCAAGATCTTTCGTCACTCAACCAGCAGATCGGTGCGCTGCAGACGCTCTC
GAGACAGCAGCACTCCAAGGCAGATCAGGAGGGCGAACACAACAAAAACGTCGTCTACTTGCTGCAGGGCAAGCT
GACGGACGTGTCGGTCAACTTCAAGGATGTCCTCGAGGCGCGCACCAAGAACATCCAGGCCTCGCGCTCACGGAC
CGAGAACTTTATATCATCCGTATCGCAGCATGCGCAACCGGCGCTACAGCCATCGGCCTCTCCCCTCTACGGAAC
TCCCAACCGGGCATCTCCGGCGCCCGGGTCCGATACGCTCTCGCTCAACCCCGTGGGCGACCAGCAGCTGCTGAT
GATGGAGGAGGCGCAGCCGGCCAACACGTACATACAGCAACGGGGAGAGGCCATCGAGGCCATCGAAAAGACTAT
CGGAGAACTGGGCAGCATCTTTGGCCAACTGGCTACCATGGTGTCGGAGCAGAGCGACATGATCCAGCGCATCGA
CGCCAACACCGAGGACGTGGTCGACAACGTCGAAGGTGCTCAGCGCGAGCTGCTCAAGTACTGGTCTCGCGTATC
GAGCAATCGGTGGCTGATTGCCAAGATGTTTGGCGTCTTGATGATATTCTTCCTGTGAGTGGAATGACTCGTACC
ACGTCATCAGAGCTAACCAGCCATGGCAGCGTCTGGGTCCTCGTTTCGGGATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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