© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03007 |
| Gene name | |
| Location | scaffold_03:381197..382542 |
| Strand | - |
| Gene length (bp) | 1345 |
| Transcript length (bp) | 1197 |
| Coding sequence length (bp) | 1197 |
| Protein length (aa) | 399 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12697 | Abhydrolase_6 | Alpha/beta hydrolase family | 1.2E-10 | 62 | 346 |
| PF00561 | Abhydrolase_1 | alpha/beta hydrolase fold | 1.6E-08 | 61 | 227 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 0.19 | 0.00 | 0.51 |
| Alive | In ants, during behavior modification | 33.76 | 17.21 | 50.31 |
| Dead | In ants, recently dead | 18.65 | 8.33 | 28.97 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.004532 | yes |
| Alive | Dead | 0.002959 | yes |
| Dead | Fungus | 0.004532 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03007 MAVLAALLLIASVVSVAAESEEASHIRSVFYVGGQYEGDDMVGQMYVERLRPVNGVLQQVPVVLIHGMGMTGSNF LNKPDGSRGWASNFLDQGYEVYIVDQTNRGRSASRLGGRTLISFNVSMVQDRFTATQRHGHWPQARNHSQWPGSG LRGDPIFDAFYAATVPSDPDAVRTQTSMQRAGTALLDIIGVPSVILGHSQGGLFPILMADSRPHLVRALVLLEPS GPPFRDGFTGGFHAWGLSDVPLAYEPVVTDPLRDLVQDVVPAPDAHHSSCILQARKPAPRQLVHLVDKPILVMTS EASYHAPYDYCTVAFLRQAGCRDVEHVELAAVGIRGNGHMMFLERNSPIVTVIHRANRPSVEPEEQKVRGDQCPM AYAASEKWERIPGWQTSKCPFPV* |
| Coding | >Ophcf2|03007 ATGGCCGTTCTCGCCGCCCTTCTCCTCATCGCCTCGGTCGTTTCCGTCGCCGCCGAGAGCGAGGAGGCCTCACAT ATACGCAGTGTCTTCTACGTCGGAGGTCAGTATGAAGGCGATGACATGGTCGGACAGATGTACGTCGAGAGGCTT CGGCCCGTGAACGGCGTGCTACAGCAGGTGCCTGTGGTGCTGATACATGGAATGGGCATGACGGGGAGCAACTTC CTCAATAAGCCAGACGGTAGCCGCGGCTGGGCCTCCAACTTCCTTGACCAGGGTTATGAAGTCTACATCGTCGAC CAAACCAACCGTGGCCGCTCGGCGTCTCGCCTCGGAGGCCGAACCCTCATCTCCTTCAACGTCTCAATGGTACAA GACCGCTTCACGGCAACACAACGACATGGTCACTGGCCTCAAGCAAGAAACCATAGCCAGTGGCCCGGATCCGGC CTCCGAGGCGACCCCATCTTCGACGCCTTCTACGCAGCAACCGTCCCGTCAGACCCTGATGCCGTCCGTACACAG ACCTCTATGCAGCGAGCCGGCACAGCACTCCTCGACATCATCGGCGTGCCTTCCGTCATCCTCGGCCACAGCCAG GGCGGCCTCTTCCCCATCCTCATGGCCGACTCTAGACCGCATCTCGTCCGCGCTCTAGTCCTGCTGGAACCGAGC GGACCGCCCTTCCGCGATGGATTCACCGGTGGCTTTCACGCCTGGGGCCTATCGGACGTGCCGCTCGCGTACGAG CCGGTTGTCACGGACCCGCTCAGGGACTTGGTTCAGGATGTGGTCCCTGCCCCTGACGCCCATCACTCGAGCTGC ATCCTGCAGGCGAGAAAGCCGGCGCCTCGACAGCTCGTTCATCTGGTTGACAAGCCTATCCTCGTCATGACTTCC GAGGCGAGCTACCACGCTCCTTACGACTACTGTACCGTCGCCTTTCTTCGTCAGGCTGGCTGTCGAGACGTGGAG CACGTTGAGCTGGCAGCCGTGGGCATTCGTGGCAATGGACACATGATGTTTCTAGAGAGAAACAGTCCGATCGTT ACCGTCATTCACCGCGCGAATCGACCGTCTGTCGAGCCCGAGGAGCAAAAGGTCCGTGGTGACCAATGTCCCATG GCATATGCAGCGTCTGAAAAGTGGGAGCGGATCCCGGGCTGGCAAACATCAAAGTGTCCGTTTCCCGTGTGA |
| Transcript | >Ophcf2|03007 ATGGCCGTTCTCGCCGCCCTTCTCCTCATCGCCTCGGTCGTTTCCGTCGCCGCCGAGAGCGAGGAGGCCTCACAT ATACGCAGTGTCTTCTACGTCGGAGGTCAGTATGAAGGCGATGACATGGTCGGACAGATGTACGTCGAGAGGCTT CGGCCCGTGAACGGCGTGCTACAGCAGGTGCCTGTGGTGCTGATACATGGAATGGGCATGACGGGGAGCAACTTC CTCAATAAGCCAGACGGTAGCCGCGGCTGGGCCTCCAACTTCCTTGACCAGGGTTATGAAGTCTACATCGTCGAC CAAACCAACCGTGGCCGCTCGGCGTCTCGCCTCGGAGGCCGAACCCTCATCTCCTTCAACGTCTCAATGGTACAA GACCGCTTCACGGCAACACAACGACATGGTCACTGGCCTCAAGCAAGAAACCATAGCCAGTGGCCCGGATCCGGC CTCCGAGGCGACCCCATCTTCGACGCCTTCTACGCAGCAACCGTCCCGTCAGACCCTGATGCCGTCCGTACACAG ACCTCTATGCAGCGAGCCGGCACAGCACTCCTCGACATCATCGGCGTGCCTTCCGTCATCCTCGGCCACAGCCAG GGCGGCCTCTTCCCCATCCTCATGGCCGACTCTAGACCGCATCTCGTCCGCGCTCTAGTCCTGCTGGAACCGAGC GGACCGCCCTTCCGCGATGGATTCACCGGTGGCTTTCACGCCTGGGGCCTATCGGACGTGCCGCTCGCGTACGAG CCGGTTGTCACGGACCCGCTCAGGGACTTGGTTCAGGATGTGGTCCCTGCCCCTGACGCCCATCACTCGAGCTGC ATCCTGCAGGCGAGAAAGCCGGCGCCTCGACAGCTCGTTCATCTGGTTGACAAGCCTATCCTCGTCATGACTTCC GAGGCGAGCTACCACGCTCCTTACGACTACTGTACCGTCGCCTTTCTTCGTCAGGCTGGCTGTCGAGACGTGGAG CACGTTGAGCTGGCAGCCGTGGGCATTCGTGGCAATGGACACATGATGTTTCTAGAGAGAAACAGTCCGATCGTT ACCGTCATTCACCGCGCGAATCGACCGTCTGTCGAGCCCGAGGAGCAAAAGGTCCGTGGTGACCAATGTCCCATG GCATATGCAGCGTCTGAAAAGTGGGAGCGGATCCCGGGCTGGCAAACATCAAAGTGTCCGTTTCCCGTGTGA |
| Gene | >Ophcf2|03007 ATGGCCGTTCTCGCCGCCCTTCTCCTCATCGCCTCGGTCGTTTCCGTCGCCGCCGAGAGCGAGGAGGCCTCACAT ATACGCAGTGTCTTCTACGTCGGAGGTCAGTATGAAGGCGATGACATGGTCGGACAGATGTACGTCGAGAGGCTT CGGCCCGTGAACGGCGTGCTACAGCAGGTGCCTGTGGTGCTGATACATGGAATGGGCATGACGGGGAGCGTAAGT CTTCACTCTCATCTCCGTACCTCTGTCTCTTATACGCCGCGGCTGAGCATTTAATGTGAGGGATAGAACTTCCTC AATAAGCCAGACGGTAGCCGCGGCTGGGCCTCCAACTTCCTTGACCAGGGTTATGAAGTCTACATCGTCGACCAA ACCAACCGTGGCCGCTCGGCGTCTCGCCTCGGAGGCCGAACCCTCATCTCCTTCAACGTCTCAATGGTACAAGAC CGCTTCACGGCAACACAACGACATGGTCACTGGCCTCAAGCAAGAAACCATAGCCAGTGGCCCGGATCCGGCCTC CGAGGCGACCCCATCTTCGACGCCTTCTACGCAGCAACCGTCCCGTCAGACCCTGATGCCGTCCGTACACAGACC TCTATGCAGCGAGCCGGCACAGCACTCCTCGACATCATCGGCGTGCCTTCCGTCATCCTCGGCCACAGCCAGGGC GGCCTCTTCCCCATCCTCATGGCCGACTCTAGACCGCATCTCGTCCGCGCTCTAGTCCTGCTGGAACCGAGCGGA CCGCCCTTCCGCGATGGATTCACCGGTGGCTTTCACGCCTGGGGCCTATCGGACGTGCCGCTCGCGTACGAGCCG GTTGTCACGGACCCGCTCAGGGACTTGGTTCAGGATGTGGTCCCTGCCCCTGACGCCCATCACTCGAGCTGCATC CTGCAGGCGAGAAAGCCGGCGCCTCGACAGCTCGTTCATCTGGTTGACAAGCCTATCCTCGTCATGACTTCCGAG GCGAGCTACCACGCTCCTTACGACTACTGTACCGTCGCCTTTCTTCGTCAGGCTGGCTGTCGAGACGTGGAGCAC GTTGAGCTGGCAGCCGTGGGCATTCGTGGCAATGGACACATGATGTTTCTAGAGAGAAACAGTCGTGAGATTCAG CTGTTGGTCCACGATTGGATCAGAGGCTTACGCCCGCACTTGCAGAACAGGATGTTGGGCTTCAGCGATCGTTAC CGTCATTCACCGCGCGAATCGACCGTCTGTCGAGCCCGAGGAGCAAAAGGTCCGTGGTGACCAATGTCCCATGGC ATATGCAGCGTCTGAAAAGTGGGAGCGGATCCCGGGCTGGCAAACATCAAAGTGTCCGTTTCCCGTGTGA |