Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|02984
Gene name
Locationscaffold_03:321458..322277
Strand+
Gene length (bp)819
Transcript length (bp)819
Coding sequence length (bp)819
Protein length (aa) 273

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12296 HsbA Hydrophobic surface binding protein A 1.7E-21 20 135

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

Domain # Start End Length
1 249 271 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 60.13 31.55 88.71
Alive In ants, during behavior modification 0.00 0.00 0.00
Dead In ants, recently dead 0.00 0.00 0.00

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 1.0 no
Alive Dead 1.0 no
Dead Fungus 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|02984
MKCNVVVLTCLATSAMASIEDIKQAIGNCGKGIEALGSALKSYSGNVQPVKDAADSLIATLKESEGKAAASEKLD
LSGALGLQEPVQALQASGKQLVSDLKTRKPMIEKSGNCKLVREEINAINAGSLALMKAIVEKVPEDAQPIAQKLA
APLKKSLEEAASEFSEQNCKDSGSPAKKSSEPAVSSEPATSSAMASSSAPAYSSPASASSEHSAPASSAYTVPAG
ASTTPYQPTGTGHPTGAPSSQPPMVTAGAALVAPAGVLAMAAAALIL*
Coding >Ophcf2|02984
ATGAAGTGCAACGTCGTCGTCCTCACCTGCCTGGCCACCAGCGCCATGGCCAGCATCGAAGACATCAAGCAGGCC
ATCGGCAACTGCGGCAAGGGCATCGAGGCTCTCGGCTCGGCCCTCAAGAGTTACTCGGGCAACGTTCAGCCCGTC
AAGGATGCGGCTGATTCCCTGATTGCGACGCTCAAGGAGAGCGAGGGCAAGGCTGCCGCCTCGGAGAAGCTGGAC
CTTTCCGGCGCTCTTGGCCTCCAGGAGCCGGTTCAGGCTCTCCAGGCCTCGGGAAAGCAGCTCGTTTCGGACCTC
AAGACGCGCAAGCCCATGATCGAGAAGTCTGGAAACTGCAAGCTGGTGCGGGAAGAGATCAACGCCATCAACGCC
GGCTCCCTCGCCCTGATGAAGGCCATCGTCGAAAAGGTCCCCGAGGATGCCCAGCCCATCGCCCAGAAGCTCGCC
GCTCCCCTCAAGAAGTCGCTCGAGGAGGCCGCGTCCGAGTTCAGCGAGCAGAACTGCAAGGACTCCGGCTCGCCC
GCCAAGAAGAGCTCCGAGCCCGCCGTCAGCTCCGAGCCCGCCACCAGCTCCGCCATGGCCAGCAGCTCCGCTCCC
GCCTACTCTTCCCCGGCCTCGGCCTCGTCCGAGCACTCTGCCCCGGCCTCTTCCGCCTACACGGTCCCTGCTGGC
GCCTCTACGACCCCCTACCAGCCCACGGGCACCGGACACCCCACCGGTGCTCCGTCCTCGCAGCCCCCGATGGTC
ACCGCCGGCGCTGCCCTCGTGGCTCCCGCTGGTGTCTTGGCCATGGCCGCCGCCGCTCTCATCCTGTAA
Transcript >Ophcf2|02984
ATGAAGTGCAACGTCGTCGTCCTCACCTGCCTGGCCACCAGCGCCATGGCCAGCATCGAAGACATCAAGCAGGCC
ATCGGCAACTGCGGCAAGGGCATCGAGGCTCTCGGCTCGGCCCTCAAGAGTTACTCGGGCAACGTTCAGCCCGTC
AAGGATGCGGCTGATTCCCTGATTGCGACGCTCAAGGAGAGCGAGGGCAAGGCTGCCGCCTCGGAGAAGCTGGAC
CTTTCCGGCGCTCTTGGCCTCCAGGAGCCGGTTCAGGCTCTCCAGGCCTCGGGAAAGCAGCTCGTTTCGGACCTC
AAGACGCGCAAGCCCATGATCGAGAAGTCTGGAAACTGCAAGCTGGTGCGGGAAGAGATCAACGCCATCAACGCC
GGCTCCCTCGCCCTGATGAAGGCCATCGTCGAAAAGGTCCCCGAGGATGCCCAGCCCATCGCCCAGAAGCTCGCC
GCTCCCCTCAAGAAGTCGCTCGAGGAGGCCGCGTCCGAGTTCAGCGAGCAGAACTGCAAGGACTCCGGCTCGCCC
GCCAAGAAGAGCTCCGAGCCCGCCGTCAGCTCCGAGCCCGCCACCAGCTCCGCCATGGCCAGCAGCTCCGCTCCC
GCCTACTCTTCCCCGGCCTCGGCCTCGTCCGAGCACTCTGCCCCGGCCTCTTCCGCCTACACGGTCCCTGCTGGC
GCCTCTACGACCCCCTACCAGCCCACGGGCACCGGACACCCCACCGGTGCTCCGTCCTCGCAGCCCCCGATGGTC
ACCGCCGGCGCTGCCCTCGTGGCTCCCGCTGGTGTCTTGGCCATGGCCGCCGCCGCTCTCATCCTGTAA
Gene >Ophcf2|02984
ATGAAGTGCAACGTCGTCGTCCTCACCTGCCTGGCCACCAGCGCCATGGCCAGCATCGAAGACATCAAGCAGGCC
ATCGGCAACTGCGGCAAGGGCATCGAGGCTCTCGGCTCGGCCCTCAAGAGTTACTCGGGCAACGTTCAGCCCGTC
AAGGATGCGGCTGATTCCCTGATTGCGACGCTCAAGGAGAGCGAGGGCAAGGCTGCCGCCTCGGAGAAGCTGGAC
CTTTCCGGCGCTCTTGGCCTCCAGGAGCCGGTTCAGGCTCTCCAGGCCTCGGGAAAGCAGCTCGTTTCGGACCTC
AAGACGCGCAAGCCCATGATCGAGAAGTCTGGAAACTGCAAGCTGGTGCGGGAAGAGATCAACGCCATCAACGCC
GGCTCCCTCGCCCTGATGAAGGCCATCGTCGAAAAGGTCCCCGAGGATGCCCAGCCCATCGCCCAGAAGCTCGCC
GCTCCCCTCAAGAAGTCGCTCGAGGAGGCCGCGTCCGAGTTCAGCGAGCAGAACTGCAAGGACTCCGGCTCGCCC
GCCAAGAAGAGCTCCGAGCCCGCCGTCAGCTCCGAGCCCGCCACCAGCTCCGCCATGGCCAGCAGCTCCGCTCCC
GCCTACTCTTCCCCGGCCTCGGCCTCGTCCGAGCACTCTGCCCCGGCCTCTTCCGCCTACACGGTCCCTGCTGGC
GCCTCTACGACCCCCTACCAGCCCACGGGCACCGGACACCCCACCGGTGCTCCGTCCTCGCAGCCCCCGATGGTC
ACCGCCGGCGCTGCCCTCGTGGCTCCCGCTGGTGTCTTGGCCATGGCCGCCGCCGCTCTCATCCTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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