© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02971 |
| Gene name | |
| Location | scaffold_03:281040..282476 |
| Strand | + |
| Gene length (bp) | 1436 |
| Transcript length (bp) | 1314 |
| Coding sequence length (bp) | 1314 |
| Protein length (aa) | 438 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02133 | Transp_cyt_pur | Permease for cytosine/purines, uracil, thiamine, allantoin | 4.0E-22 | 2 | 416 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 31 | 19 |
| 2 | 35 | 57 | 22 |
| 3 | 78 | 97 | 19 |
| 4 | 112 | 134 | 22 |
| 5 | 141 | 160 | 19 |
| 6 | 180 | 202 | 22 |
| 7 | 211 | 233 | 22 |
| 8 | 270 | 292 | 22 |
| 9 | 305 | 322 | 17 |
| 10 | 327 | 349 | 22 |
| 11 | 371 | 390 | 19 |
| 12 | 405 | 427 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02971 MQVAVMWFSANISLNNLAAAMLGPLVLGLGFVDCALLAVAGALVGSLTTAYMSVWGPQSGNRTMVVLRFFMGYWP SKLPCFLNVVLMVGYATIDGIIGGQVLSAVSGGTMSIVVGIVVVSVVCWVVAVFGMALFHHYERYAWIPQIIALF VLVGVAGPHFDPSSTSKATGALLAAQRLSFFNICLYVPNSWAAAASDFYVYYPEKTSRTKIFSLTLIGIWTAFCL VYLIAIGLGTGVANMPAWAEANALSSGALIVAGYEPLGGFGRLCAVVVALGVIANSIPSTYSAALGCQTLGRHGK AVPRWLWSTLLVVVELVLAVAGREHLFLIFQNFLALMGYWVMIMVIIVLEEHLLFRRAHGFDWSRWEDRDYLPVG WAALAAFLVGWVGAVLGMSQAWYVGPLAKLAATADVGLWIGSAFTLIVFPPLRRLELKRIGR* |
| Coding | >Ophcf2|02971 ATGCAGGTGGCCGTCATGTGGTTCAGCGCCAACATCTCGTTGAATAACCTCGCGGCCGCCATGCTGGGACCCTTG GTTTTGGGGCTGGGCTTTGTGGATTGTGCGCTTTTGGCCGTTGCCGGCGCTTTGGTTGGGAGCTTGACGACGGCT TATATGAGTGTTTGGGGGCCGCAGAGCGGGAATCGGACCATGGTTGTTCTTCGCTTCTTTATGGGTTATTGGCCT TCGAAGCTCCCTTGCTTCCTCAACGTTGTTCTCATGGTTGGCTACGCTACCATCGACGGCATCATCGGTGGTCAA GTCCTCTCAGCCGTTAGCGGAGGAACCATGAGCATCGTCGTTGGCATCGTCGTCGTCTCTGTTGTCTGCTGGGTC GTCGCCGTCTTTGGCATGGCCCTCTTCCACCACTACGAACGATACGCCTGGATCCCTCAAATCATCGCTCTGTTC GTCCTCGTGGGCGTTGCGGGCCCTCACTTTGATCCCTCTTCCACCTCCAAGGCAACGGGAGCCCTCCTCGCTGCT CAACGCCTCTCCTTCTTCAACATCTGCTTATACGTGCCCAACTCATGGGCAGCCGCCGCGTCCGATTTCTACGTC TACTACCCTGAGAAGACGTCACGCACCAAGATCTTCAGCCTTACTCTCATCGGCATCTGGACCGCCTTCTGCCTC GTCTACCTCATCGCCATTGGCCTCGGCACCGGCGTTGCCAATATGCCGGCTTGGGCAGAAGCCAACGCCCTCAGC TCGGGAGCTCTCATTGTTGCCGGTTATGAACCCCTTGGCGGCTTCGGTCGGTTATGTGCTGTCGTCGTTGCTCTC GGCGTCATAGCAAACTCCATTCCGAGCACCTACTCGGCCGCTCTCGGCTGTCAGACTCTGGGTCGTCATGGCAAA GCCGTCCCCCGCTGGTTATGGTCGACTCTTCTCGTCGTCGTCGAGCTCGTCCTGGCCGTCGCGGGCCGCGAGCAC CTCTTCCTCATCTTCCAGAACTTCCTGGCTCTCATGGGCTACTGGGTCATGATCATGGTCATCATCGTCCTCGAG GAACACCTCCTCTTCCGCCGCGCTCATGGCTTCGACTGGTCCCGTTGGGAAGATCGCGACTATCTGCCCGTCGGT TGGGCCGCCCTCGCCGCCTTTCTCGTCGGCTGGGTTGGTGCTGTTCTCGGTATGAGTCAGGCCTGGTATGTAGGG CCGCTGGCCAAGCTGGCTGCCACGGCCGATGTTGGACTGTGGATTGGCAGCGCATTTACACTGATTGTGTTTCCG CCGCTGCGTCGTCTGGAGCTGAAGCGGATCGGCCGTTGA |
| Transcript | >Ophcf2|02971 ATGCAGGTGGCCGTCATGTGGTTCAGCGCCAACATCTCGTTGAATAACCTCGCGGCCGCCATGCTGGGACCCTTG GTTTTGGGGCTGGGCTTTGTGGATTGTGCGCTTTTGGCCGTTGCCGGCGCTTTGGTTGGGAGCTTGACGACGGCT TATATGAGTGTTTGGGGGCCGCAGAGCGGGAATCGGACCATGGTTGTTCTTCGCTTCTTTATGGGTTATTGGCCT TCGAAGCTCCCTTGCTTCCTCAACGTTGTTCTCATGGTTGGCTACGCTACCATCGACGGCATCATCGGTGGTCAA GTCCTCTCAGCCGTTAGCGGAGGAACCATGAGCATCGTCGTTGGCATCGTCGTCGTCTCTGTTGTCTGCTGGGTC GTCGCCGTCTTTGGCATGGCCCTCTTCCACCACTACGAACGATACGCCTGGATCCCTCAAATCATCGCTCTGTTC GTCCTCGTGGGCGTTGCGGGCCCTCACTTTGATCCCTCTTCCACCTCCAAGGCAACGGGAGCCCTCCTCGCTGCT CAACGCCTCTCCTTCTTCAACATCTGCTTATACGTGCCCAACTCATGGGCAGCCGCCGCGTCCGATTTCTACGTC TACTACCCTGAGAAGACGTCACGCACCAAGATCTTCAGCCTTACTCTCATCGGCATCTGGACCGCCTTCTGCCTC GTCTACCTCATCGCCATTGGCCTCGGCACCGGCGTTGCCAATATGCCGGCTTGGGCAGAAGCCAACGCCCTCAGC TCGGGAGCTCTCATTGTTGCCGGTTATGAACCCCTTGGCGGCTTCGGTCGGTTATGTGCTGTCGTCGTTGCTCTC GGCGTCATAGCAAACTCCATTCCGAGCACCTACTCGGCCGCTCTCGGCTGTCAGACTCTGGGTCGTCATGGCAAA GCCGTCCCCCGCTGGTTATGGTCGACTCTTCTCGTCGTCGTCGAGCTCGTCCTGGCCGTCGCGGGCCGCGAGCAC CTCTTCCTCATCTTCCAGAACTTCCTGGCTCTCATGGGCTACTGGGTCATGATCATGGTCATCATCGTCCTCGAG GAACACCTCCTCTTCCGCCGCGCTCATGGCTTCGACTGGTCCCGTTGGGAAGATCGCGACTATCTGCCCGTCGGT TGGGCCGCCCTCGCCGCCTTTCTCGTCGGCTGGGTTGGTGCTGTTCTCGGTATGAGTCAGGCCTGGTATGTAGGG CCGCTGGCCAAGCTGGCTGCCACGGCCGATGTTGGACTGTGGATTGGCAGCGCATTTACACTGATTGTGTTTCCG CCGCTGCGTCGTCTGGAGCTGAAGCGGATCGGCCGTTGA |
| Gene | >Ophcf2|02971 ATGCAGGTGGCCGTCATGTGGTTCAGCGCCAACATCTCGTTGAATAACCTCGCGGCCGCCATGCTGGGACCCTTG GTTTTGGGGCTGGGCTTTGTGGATTGTGCGCTTTTGGCCGTTGCCGGCGCTTTGGTTGGGAGCTTGACGACGGCT TATATGAGTGTTTGGGGGCCGCAGAGCGGGAATCGGACCATGGTGAGTTGGGGGGTTATCTTGGTGTGAGTTCTC CGGGGGGGTGTGGGAATGTCTTCTAACTGCTTAGGTTGTTCTTCGCTTCTTTATGGGTTATTGGCCTTCGAAGCT CCCTTGCTTCCTCAACGTTGTTCTCATGGTTGGCTACGCTACCATCGACGGCATCATCGGTGGTCAAGTCCTCTC AGCCGTTAGCGGAGGAACCATGAGCATCGTCGTTGGCATCGTCGTCGTCTCTGTTGTCTGCTGGGTCGTCGCCGT CTTTGGCATGGCCCTCTTCCACCACTACGAACGGTAGGAATCTTCTTCCCCTTTCATCGTTTTACACCGAGACTC ACAAAGCTACAAGATACGCCTGGATCCCTCAAATCATCGCTCTGTTCGTCCTCGTGGGCGTTGCGGGCCCTCACT TTGATCCCTCTTCCACCTCCAAGGCAACGGGAGCCCTCCTCGCTGCTCAACGCCTCTCCTTCTTCAACATCTGCT TATACGTGCCCAACTCATGGGCAGCCGCCGCGTCCGATTTCTACGTCTACTACCCTGAGAAGACGTCACGCACCA AGATCTTCAGCCTTACTCTCATCGGCATCTGGACCGCCTTCTGCCTCGTCTACCTCATCGCCATTGGCCTCGGCA CCGGCGTTGCCAATATGCCGGCTTGGGCAGAAGCCAACGCCCTCAGCTCGGGAGCTCTCATTGTTGCCGGTTATG AACCCCTTGGCGGCTTCGGTCGGTTATGTGCTGTCGTCGTTGCTCTCGGCGTCATAGCAAACTCCATTCCGAGCA CCTACTCGGCCGCTCTCGGCTGTCAGACTCTGGGTCGTCATGGCAAAGCCGTCCCCCGCTGGTTATGGTCGACTC TTCTCGTCGTCGTCGAGCTCGTCCTGGCCGTCGCGGGCCGCGAGCACCTCTTCCTCATCTTCCAGAACTTCCTGG CTCTCATGGGCTACTGGGTCATGATCATGGTCATCATCGTCCTCGAGGAACACCTCCTCTTCCGCCGCGCTCATG GCTTCGACTGGTCCCGTTGGGAAGATCGCGACTATCTGCCCGTCGGTTGGGCCGCCCTCGCCGCCTTTCTCGTCG GCTGGGTTGGTGCTGTTCTCGGTATGAGTCAGGCCTGGTATGTAGGGCCGCTGGCCAAGCTGGCTGCCACGGCCG ATGTTGGACTGTGGATTGGCAGCGCATTTACACTGATTGTGTTTCCGCCGCTGCGTCGTCTGGAGCTGAAGCGGA TCGGCCGTTGA |