© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02970 |
| Gene name | |
| Location | scaffold_03:277383..278983 |
| Strand | + |
| Gene length (bp) | 1600 |
| Transcript length (bp) | 1317 |
| Coding sequence length (bp) | 1317 |
| Protein length (aa) | 439 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Transmembrane domain | 0.0862 | 0.0542 | 0.0358 | 0.8363 | 0.0272 | 0.0018 | 0.094 | 0.2559 | 0.2478 | 0.0111 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 29 | 19 |
| 2 | 45 | 62 | 17 |
| 3 | 96 | 118 | 22 |
| 4 | 131 | 153 | 22 |
| 5 | 179 | 201 | 22 |
| 6 | 213 | 235 | 22 |
| 7 | 245 | 267 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 106.78 | 60.67 | 152.89 |
| Alive | In ants, during behavior modification | 903.42 | 366.72 | 1440.13 |
| Dead | In ants, recently dead | 855.48 | 347.15 | 1363.80 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.846601 | no |
| Dead | Fungus | 0.000238 | yes |
| Orthofinder run ID | 4 |
| Orthogroup | 1916 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02970 MMELTTSLTIESWILYALGVAVVGCRLVSRRIKLGKWRALMIDDYLMIFAMVNFTGVAVSINEVAKNGSNYMPPE EAALLSPSRVQMAIHGSIMTFVLEIFTLTATWAIKACLLILYARLTANTMTRQHSLVKVAAVYCALTYVVVTAMF LFYWCRPTYEYWAVPVRIMQCATYYHHMIFATACNISSDLLLLFIPIPIIIKTRLPAKRKAILCLILGLGVFNIL AAILNRYYNFSTPNSYVFLYWYMAEVGIAVMVGNLPLCWPILRLVLGNTEKTKTPSYHGDTISGNNRRKRRRDPL GTTVTDTDWDKLEDAECNGAAGSETSQTQQPGSDQGSQIELVLQGHKHNHIHNTAVSVSGVDEAETKLQRDQEQQ EQEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLHKSGSEGDMITVTRTVDISSEGPQ* |
| Coding | >Ophcf2|02970 ATGATGGAATTAACGACGTCTTTGACCATCGAGTCGTGGATCCTCTACGCGCTGGGCGTTGCCGTCGTTGGCTGC CGTCTCGTATCGCGGCGCATCAAGCTTGGCAAATGGAGAGCGCTGATGATTGACGACTACCTCATGATCTTTGCC ATGGTCAACTTTACCGGCGTGGCTGTTTCCATCAACGAGGTGGCCAAGAATGGCAGCAATTACATGCCGCCCGAG GAGGCGGCTCTGCTATCGCCTTCGCGCGTCCAGATGGCTATTCACGGAAGCATCATGACGTTTGTGCTCGAGATC TTCACCCTGACGGCTACTTGGGCCATCAAGGCGTGTCTGCTCATTCTCTACGCACGGCTCACGGCCAACACCATG ACTCGCCAGCATTCCCTCGTCAAGGTGGCGGCAGTCTACTGTGCGTTGACGTACGTCGTCGTCACAGCCATGTTT CTCTTTTACTGGTGTAGGCCCACGTACGAGTACTGGGCTGTGCCGGTCAGAATCATGCAATGCGCGACGTATTAT CACCACATGATATTTGCGACGGCGTGCAATATCTCGTCGGATCTTTTGCTTCTCTTTATTCCGATTCCCATCATC ATCAAGACGCGGTTGCCGGCTAAGAGAAAAGCCATTCTCTGCCTCATCCTCGGTCTCGGAGTCTTCAACATCCTA GCAGCCATCCTCAACCGTTACTACAACTTTAGCACGCCCAACTCGTACGTCTTCCTCTACTGGTACATGGCCGAA GTGGGTATCGCCGTCATGGTGGGCAACCTTCCACTCTGCTGGCCGATCCTCCGGCTCGTGCTCGGCAACACGGAA AAAACCAAGACGCCCTCGTATCACGGCGACACCATCAGCGGCAACAACCGACGCAAGCGGAGGCGCGACCCGCTC GGGACGACGGTCACGGACACGGACTGGGACAAGTTGGAGGATGCCGAGTGCAACGGCGCGGCGGGCAGCGAGACT TCGCAGACGCAGCAGCCGGGATCCGACCAGGGGAGTCAGATCGAGCTGGTGCTGCAGGGCCACAAGCACAATCAC ATTCACAATACGGCCGTGAGCGTCAGTGGCGTGGACGAGGCCGAGACTAAGCTACAGCGGGATCAGGAGCAGCAG GAGCAGGAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAG CAGCAACAGCAACAACAGCAGCAACAGCAACAACAGCAGCTTCACAAGTCGGGGTCCGAGGGGGACATGATTACG GTGACGAGGACGGTGGATATTTCGTCCGAGGGGCCTCAATGA |
| Transcript | >Ophcf2|02970 ATGATGGAATTAACGACGTCTTTGACCATCGAGTCGTGGATCCTCTACGCGCTGGGCGTTGCCGTCGTTGGCTGC CGTCTCGTATCGCGGCGCATCAAGCTTGGCAAATGGAGAGCGCTGATGATTGACGACTACCTCATGATCTTTGCC ATGGTCAACTTTACCGGCGTGGCTGTTTCCATCAACGAGGTGGCCAAGAATGGCAGCAATTACATGCCGCCCGAG GAGGCGGCTCTGCTATCGCCTTCGCGCGTCCAGATGGCTATTCACGGAAGCATCATGACGTTTGTGCTCGAGATC TTCACCCTGACGGCTACTTGGGCCATCAAGGCGTGTCTGCTCATTCTCTACGCACGGCTCACGGCCAACACCATG ACTCGCCAGCATTCCCTCGTCAAGGTGGCGGCAGTCTACTGTGCGTTGACGTACGTCGTCGTCACAGCCATGTTT CTCTTTTACTGGTGTAGGCCCACGTACGAGTACTGGGCTGTGCCGGTCAGAATCATGCAATGCGCGACGTATTAT CACCACATGATATTTGCGACGGCGTGCAATATCTCGTCGGATCTTTTGCTTCTCTTTATTCCGATTCCCATCATC ATCAAGACGCGGTTGCCGGCTAAGAGAAAAGCCATTCTCTGCCTCATCCTCGGTCTCGGAGTCTTCAACATCCTA GCAGCCATCCTCAACCGTTACTACAACTTTAGCACGCCCAACTCGTACGTCTTCCTCTACTGGTACATGGCCGAA GTGGGTATCGCCGTCATGGTGGGCAACCTTCCACTCTGCTGGCCGATCCTCCGGCTCGTGCTCGGCAACACGGAA AAAACCAAGACGCCCTCGTATCACGGCGACACCATCAGCGGCAACAACCGACGCAAGCGGAGGCGCGACCCGCTC GGGACGACGGTCACGGACACGGACTGGGACAAGTTGGAGGATGCCGAGTGCAACGGCGCGGCGGGCAGCGAGACT TCGCAGACGCAGCAGCCGGGATCCGACCAGGGGAGTCAGATCGAGCTGGTGCTGCAGGGCCACAAGCACAATCAC ATTCACAATACGGCCGTGAGCGTCAGTGGCGTGGACGAGGCCGAGACTAAGCTACAGCGGGATCAGGAGCAGCAG GAGCAGGAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAG CAGCAACAGCAACAACAGCAGCAACAGCAACAACAGCAGCTTCACAAGTCGGGGTCCGAGGGGGACATGATTACG GTGACGAGGACGGTGGATATTTCGTCCGAGGGGCCTCAATGA |
| Gene | >Ophcf2|02970 ATGATGGAATTAACGACGTCTTTGACCATCGAGTCGTGGATCCTCTACGCGCTGGGCGTTGCCGTCGTTGGCTGC CGTCTCGTATCGCGGCGCATCAAGCTTGGCAAATGGAGAGCGCTGATGATTGACGACTACCTCATGATCTTTGCC ATGGTATGTTGTTCTCCCCCGTTGTCGGCTTGCTGGGCCGTCTGATGGTCGTCTGTCAAGGTCAACTTTACCGGC GTGGCTGTTTCCATCAACGAGGTGGCCAAGAATGGCAGCAATTACATGCCGCCCGAGGAGGCGGCTCTGCTATCG CCTTCGCGCGTCCAGATGGCTATTCACGGAAGCATCATGACGTTTGTGCTCGAGATCTTCACCCTGACGGCTACT TGGGCCATCAAGGCGTGTCTGCTCATTCTCTACGCACGGCTCACGTACGTCTCTGGTGTGTGTGAAAAGTGACGA TGCTGCCTGCTGACGCGCCCCAGGGCCAACACCATGACTCGCCAGCATTCCCTCGTCAAGGTGGCGGCAGTCTAC TGTGCGTTGACGTACGTCGTCGTCACAGCCATGTTTCTCTTTTACTGGTGTAGGCCCACGTACGAGTACTGGGCT GTGCCGGTCAGAATCAGTGAGTGCTGCCACGTTTGGAGAGATTTCGGACGTGGCTGACGAGTCAAGTGCAATGCG CGACGTATTATCACCACATGATATTTGCGACGGCGTGCAATATCTCGTCGGATCTTTTGCTTCTCTTTATTCCGA TTCCCATCATCATCAAGACGCGGTTGCCGGCTAAGAGGTGAGGGGAAGATGATGTCGATGACGGGAGAAACTCGC GACTGATGAGACGGGTTCACAGAAAAGCCATTCTCTGCCTCATCCTCGGTCTCGGAGTCTTCAACGTGGGTTTTT ATTCCCCCACGCTGTAGCCAAATCTCGGCAATGCGCTGACGGCCCCGTCCAGATCCTAGCAGCCATCCTCAACCG TTACTACAACTTTAGCACGCCCAACTCGTACGTCTTCCTCTACTGGTACATGGCCGAAGTGGGTATCGCCGTCAT GGTGGGCAACCTTCCACTCTGCTGGCCGATCCTCCGGCTCGTGCTCGGCAACACGGAAAAAACCAAGACGCCCTC GTATCACGGCGACACCATCAGCGGCAACAACCGACGCAAGCGGAGGCGCGACCCGCTCGGGACGACGGTCACGGA CACGGACTGGGACAAGTTGGAGGATGCCGAGTGCAACGGCGCGGCGGGCAGCGAGACTTCGCAGACGCAGCAGCC GGGATCCGACCAGGGGAGTCAGATCGAGCTGGTGCTGCAGGGCCACAAGCACAATCACATTCACAATACGGCCGT GAGCGTCAGTGGCGTGGACGAGGCCGAGACTAAGCTACAGCGGGATCAGGAGCAGCAGGAGCAGGAACAGCAACA GCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAGCAGCAACAGCAACAACA GCAGCAACAGCAACAACAGCAGCTTCACAAGTCGGGGTCCGAGGGGGACATGATTACGGTGACGAGGACGGTGGA TATTTCGTCCGAGGGGCCTCAATGA |