Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|02970
Gene name
Locationscaffold_03:277383..278983
Strand+
Gene length (bp)1600
Transcript length (bp)1317
Coding sequence length (bp)1317
Protein length (aa) 439

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.5

Transmembrane Domains

Domain # Start End Length
1 10 29 19
2 45 62 17
3 96 118 22
4 131 153 22
5 179 201 22
6 213 235 22
7 245 267 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 106.78 60.67 152.89
Alive In ants, during behavior modification 903.42 366.72 1440.13
Dead In ants, recently dead 855.48 347.15 1363.80

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.846601 no
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|02970
MMELTTSLTIESWILYALGVAVVGCRLVSRRIKLGKWRALMIDDYLMIFAMVNFTGVAVSINEVAKNGSNYMPPE
EAALLSPSRVQMAIHGSIMTFVLEIFTLTATWAIKACLLILYARLTANTMTRQHSLVKVAAVYCALTYVVVTAMF
LFYWCRPTYEYWAVPVRIMQCATYYHHMIFATACNISSDLLLLFIPIPIIIKTRLPAKRKAILCLILGLGVFNIL
AAILNRYYNFSTPNSYVFLYWYMAEVGIAVMVGNLPLCWPILRLVLGNTEKTKTPSYHGDTISGNNRRKRRRDPL
GTTVTDTDWDKLEDAECNGAAGSETSQTQQPGSDQGSQIELVLQGHKHNHIHNTAVSVSGVDEAETKLQRDQEQQ
EQEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLHKSGSEGDMITVTRTVDISSEGPQ*
Coding >Ophcf2|02970
ATGATGGAATTAACGACGTCTTTGACCATCGAGTCGTGGATCCTCTACGCGCTGGGCGTTGCCGTCGTTGGCTGC
CGTCTCGTATCGCGGCGCATCAAGCTTGGCAAATGGAGAGCGCTGATGATTGACGACTACCTCATGATCTTTGCC
ATGGTCAACTTTACCGGCGTGGCTGTTTCCATCAACGAGGTGGCCAAGAATGGCAGCAATTACATGCCGCCCGAG
GAGGCGGCTCTGCTATCGCCTTCGCGCGTCCAGATGGCTATTCACGGAAGCATCATGACGTTTGTGCTCGAGATC
TTCACCCTGACGGCTACTTGGGCCATCAAGGCGTGTCTGCTCATTCTCTACGCACGGCTCACGGCCAACACCATG
ACTCGCCAGCATTCCCTCGTCAAGGTGGCGGCAGTCTACTGTGCGTTGACGTACGTCGTCGTCACAGCCATGTTT
CTCTTTTACTGGTGTAGGCCCACGTACGAGTACTGGGCTGTGCCGGTCAGAATCATGCAATGCGCGACGTATTAT
CACCACATGATATTTGCGACGGCGTGCAATATCTCGTCGGATCTTTTGCTTCTCTTTATTCCGATTCCCATCATC
ATCAAGACGCGGTTGCCGGCTAAGAGAAAAGCCATTCTCTGCCTCATCCTCGGTCTCGGAGTCTTCAACATCCTA
GCAGCCATCCTCAACCGTTACTACAACTTTAGCACGCCCAACTCGTACGTCTTCCTCTACTGGTACATGGCCGAA
GTGGGTATCGCCGTCATGGTGGGCAACCTTCCACTCTGCTGGCCGATCCTCCGGCTCGTGCTCGGCAACACGGAA
AAAACCAAGACGCCCTCGTATCACGGCGACACCATCAGCGGCAACAACCGACGCAAGCGGAGGCGCGACCCGCTC
GGGACGACGGTCACGGACACGGACTGGGACAAGTTGGAGGATGCCGAGTGCAACGGCGCGGCGGGCAGCGAGACT
TCGCAGACGCAGCAGCCGGGATCCGACCAGGGGAGTCAGATCGAGCTGGTGCTGCAGGGCCACAAGCACAATCAC
ATTCACAATACGGCCGTGAGCGTCAGTGGCGTGGACGAGGCCGAGACTAAGCTACAGCGGGATCAGGAGCAGCAG
GAGCAGGAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAG
CAGCAACAGCAACAACAGCAGCAACAGCAACAACAGCAGCTTCACAAGTCGGGGTCCGAGGGGGACATGATTACG
GTGACGAGGACGGTGGATATTTCGTCCGAGGGGCCTCAATGA
Transcript >Ophcf2|02970
ATGATGGAATTAACGACGTCTTTGACCATCGAGTCGTGGATCCTCTACGCGCTGGGCGTTGCCGTCGTTGGCTGC
CGTCTCGTATCGCGGCGCATCAAGCTTGGCAAATGGAGAGCGCTGATGATTGACGACTACCTCATGATCTTTGCC
ATGGTCAACTTTACCGGCGTGGCTGTTTCCATCAACGAGGTGGCCAAGAATGGCAGCAATTACATGCCGCCCGAG
GAGGCGGCTCTGCTATCGCCTTCGCGCGTCCAGATGGCTATTCACGGAAGCATCATGACGTTTGTGCTCGAGATC
TTCACCCTGACGGCTACTTGGGCCATCAAGGCGTGTCTGCTCATTCTCTACGCACGGCTCACGGCCAACACCATG
ACTCGCCAGCATTCCCTCGTCAAGGTGGCGGCAGTCTACTGTGCGTTGACGTACGTCGTCGTCACAGCCATGTTT
CTCTTTTACTGGTGTAGGCCCACGTACGAGTACTGGGCTGTGCCGGTCAGAATCATGCAATGCGCGACGTATTAT
CACCACATGATATTTGCGACGGCGTGCAATATCTCGTCGGATCTTTTGCTTCTCTTTATTCCGATTCCCATCATC
ATCAAGACGCGGTTGCCGGCTAAGAGAAAAGCCATTCTCTGCCTCATCCTCGGTCTCGGAGTCTTCAACATCCTA
GCAGCCATCCTCAACCGTTACTACAACTTTAGCACGCCCAACTCGTACGTCTTCCTCTACTGGTACATGGCCGAA
GTGGGTATCGCCGTCATGGTGGGCAACCTTCCACTCTGCTGGCCGATCCTCCGGCTCGTGCTCGGCAACACGGAA
AAAACCAAGACGCCCTCGTATCACGGCGACACCATCAGCGGCAACAACCGACGCAAGCGGAGGCGCGACCCGCTC
GGGACGACGGTCACGGACACGGACTGGGACAAGTTGGAGGATGCCGAGTGCAACGGCGCGGCGGGCAGCGAGACT
TCGCAGACGCAGCAGCCGGGATCCGACCAGGGGAGTCAGATCGAGCTGGTGCTGCAGGGCCACAAGCACAATCAC
ATTCACAATACGGCCGTGAGCGTCAGTGGCGTGGACGAGGCCGAGACTAAGCTACAGCGGGATCAGGAGCAGCAG
GAGCAGGAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAG
CAGCAACAGCAACAACAGCAGCAACAGCAACAACAGCAGCTTCACAAGTCGGGGTCCGAGGGGGACATGATTACG
GTGACGAGGACGGTGGATATTTCGTCCGAGGGGCCTCAATGA
Gene >Ophcf2|02970
ATGATGGAATTAACGACGTCTTTGACCATCGAGTCGTGGATCCTCTACGCGCTGGGCGTTGCCGTCGTTGGCTGC
CGTCTCGTATCGCGGCGCATCAAGCTTGGCAAATGGAGAGCGCTGATGATTGACGACTACCTCATGATCTTTGCC
ATGGTATGTTGTTCTCCCCCGTTGTCGGCTTGCTGGGCCGTCTGATGGTCGTCTGTCAAGGTCAACTTTACCGGC
GTGGCTGTTTCCATCAACGAGGTGGCCAAGAATGGCAGCAATTACATGCCGCCCGAGGAGGCGGCTCTGCTATCG
CCTTCGCGCGTCCAGATGGCTATTCACGGAAGCATCATGACGTTTGTGCTCGAGATCTTCACCCTGACGGCTACT
TGGGCCATCAAGGCGTGTCTGCTCATTCTCTACGCACGGCTCACGTACGTCTCTGGTGTGTGTGAAAAGTGACGA
TGCTGCCTGCTGACGCGCCCCAGGGCCAACACCATGACTCGCCAGCATTCCCTCGTCAAGGTGGCGGCAGTCTAC
TGTGCGTTGACGTACGTCGTCGTCACAGCCATGTTTCTCTTTTACTGGTGTAGGCCCACGTACGAGTACTGGGCT
GTGCCGGTCAGAATCAGTGAGTGCTGCCACGTTTGGAGAGATTTCGGACGTGGCTGACGAGTCAAGTGCAATGCG
CGACGTATTATCACCACATGATATTTGCGACGGCGTGCAATATCTCGTCGGATCTTTTGCTTCTCTTTATTCCGA
TTCCCATCATCATCAAGACGCGGTTGCCGGCTAAGAGGTGAGGGGAAGATGATGTCGATGACGGGAGAAACTCGC
GACTGATGAGACGGGTTCACAGAAAAGCCATTCTCTGCCTCATCCTCGGTCTCGGAGTCTTCAACGTGGGTTTTT
ATTCCCCCACGCTGTAGCCAAATCTCGGCAATGCGCTGACGGCCCCGTCCAGATCCTAGCAGCCATCCTCAACCG
TTACTACAACTTTAGCACGCCCAACTCGTACGTCTTCCTCTACTGGTACATGGCCGAAGTGGGTATCGCCGTCAT
GGTGGGCAACCTTCCACTCTGCTGGCCGATCCTCCGGCTCGTGCTCGGCAACACGGAAAAAACCAAGACGCCCTC
GTATCACGGCGACACCATCAGCGGCAACAACCGACGCAAGCGGAGGCGCGACCCGCTCGGGACGACGGTCACGGA
CACGGACTGGGACAAGTTGGAGGATGCCGAGTGCAACGGCGCGGCGGGCAGCGAGACTTCGCAGACGCAGCAGCC
GGGATCCGACCAGGGGAGTCAGATCGAGCTGGTGCTGCAGGGCCACAAGCACAATCACATTCACAATACGGCCGT
GAGCGTCAGTGGCGTGGACGAGGCCGAGACTAAGCTACAGCGGGATCAGGAGCAGCAGGAGCAGGAACAGCAACA
GCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAGCAGCAACAGCAACAACA
GCAGCAACAGCAACAACAGCAGCTTCACAAGTCGGGGTCCGAGGGGGACATGATTACGGTGACGAGGACGGTGGA
TATTTCGTCCGAGGGGCCTCAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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