Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|02961
Gene name
Locationscaffold_03:202525..203719
Strand+
Gene length (bp)1194
Transcript length (bp)1134
Coding sequence length (bp)1134
Protein length (aa) 378

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12697 Abhydrolase_6 Alpha/beta hydrolase family 6.4E-12 88 201
PF00561 Abhydrolase_1 alpha/beta hydrolase fold 3.1E-09 86 174

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.1413 0.0731 0.9095 0.0758 0.1827 0.0429 0.4059 0.3631 0.1734 0.0065

SignalP

SignalP signal predicted Location Score
Yes 1 - 21 0.99951

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 0.43 0.0 0.99
Alive In ants, during behavior modification 0.81 0.0 1.89
Dead In ants, recently dead 0.34 0.0 0.81

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.336302 no
Alive Dead 0.116556 no
Dead Fungus 1.000000 no

Orthologs

Orthofinder run ID4
Orthogroup6485
Change Orthofinder run
Species Protein ID
Ophiocordyceps camponoti-floridani Ophcf2|02961 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|6304
Ophiocordyceps subramaniannii Hirsu2|10301

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|02961
MFPKLLIQLVSFFLAATGSLAAADAECRPAEKQLNKTLANYRLPGRNGHSSYLTHDFIPTTCGSRLSVHYTEPTV
YGNLTGSAKKPVLILLHGWPQSSYAWRHVTQALSERVPVIAFDTPGYGLSSPCASGADQLTTGTAILEAVTKIYG
KNTSIILAGHDRGARIVQRLAVNIDHFPHVRAMGVFIVDILPVYEKFRSFSKPQNAIGYYHWSFLPRGAFALDMI
KAYGGGNFIKGSLQGGSGPNEKGLKLFKSDNAWEVYANFFDQVSIANYSISDFRSSATVEYETQEADQKAGRKIK
MPCFVFYSEHMQTRSGLSSSGFSMAEIWPNWVATGVKLILEGVGRGIGHFIVEEAPEDTIQAMDSFMDDLEVDKA
EA*
Coding >Ophcf2|02961
ATGTTTCCCAAGCTCCTCATCCAACTCGTCAGCTTCTTCCTCGCGGCCACAGGAAGCCTCGCAGCCGCCGATGCA
GAATGCCGTCCCGCGGAAAAGCAGCTGAACAAGACACTAGCCAACTATCGACTTCCAGGCCGTAACGGCCACTCC
TCCTACCTGACCCATGACTTTATCCCCACGACGTGTGGCTCACGCCTCTCGGTTCACTACACGGAACCGACTGTC
TACGGGAACCTGACTGGCTCGGCGAAGAAGCCCGTCTTGATCCTGCTGCATGGTTGGCCGCAGTCGAGTTATGCC
TGGCGTCATGTCACGCAGGCTCTGTCCGAGCGGGTGCCCGTGATAGCGTTTGATACTCCCGGCTACGGACTCTCC
TCTCCCTGTGCTTCCGGGGCCGACCAACTCACAACCGGAACCGCCATCCTCGAAGCAGTGACAAAAATCTACGGT
AAGAATACCAGCATCATCCTCGCCGGCCATGATCGCGGCGCACGAATCGTACAACGACTCGCCGTCAACATCGAT
CATTTTCCGCACGTTCGAGCCATGGGTGTCTTCATTGTCGACATCCTCCCCGTTTACGAAAAGTTCAGATCATTC
TCCAAGCCGCAAAACGCCATCGGATATTATCACTGGTCGTTTCTTCCACGGGGTGCCTTTGCTCTCGACATGATA
AAGGCGTACGGAGGCGGCAACTTCATCAAGGGTTCTCTGCAAGGAGGCAGCGGGCCCAACGAGAAAGGGCTCAAG
CTCTTCAAGTCGGACAACGCCTGGGAGGTTTACGCCAACTTCTTCGATCAAGTGAGCATCGCCAACTACTCCATT
AGTGATTTTCGTTCCTCCGCCACTGTCGAATACGAGACGCAGGAGGCAGATCAGAAAGCTGGTCGAAAGATTAAG
ATGCCATGCTTCGTCTTTTACTCGGAACACATGCAGACGCGTTCTGGTCTGAGCAGTTCGGGCTTCAGCATGGCT
GAGATCTGGCCGAATTGGGTTGCCACGGGGGTCAAGTTGATCTTGGAAGGCGTTGGGCGCGGGATTGGACACTTT
ATCGTTGAGGAGGCTCCAGAAGACACTATACAAGCGATGGACAGCTTCATGGATGACCTAGAGGTCGACAAAGCT
GAAGCCTAG
Transcript >Ophcf2|02961
ATGTTTCCCAAGCTCCTCATCCAACTCGTCAGCTTCTTCCTCGCGGCCACAGGAAGCCTCGCAGCCGCCGATGCA
GAATGCCGTCCCGCGGAAAAGCAGCTGAACAAGACACTAGCCAACTATCGACTTCCAGGCCGTAACGGCCACTCC
TCCTACCTGACCCATGACTTTATCCCCACGACGTGTGGCTCACGCCTCTCGGTTCACTACACGGAACCGACTGTC
TACGGGAACCTGACTGGCTCGGCGAAGAAGCCCGTCTTGATCCTGCTGCATGGTTGGCCGCAGTCGAGTTATGCC
TGGCGTCATGTCACGCAGGCTCTGTCCGAGCGGGTGCCCGTGATAGCGTTTGATACTCCCGGCTACGGACTCTCC
TCTCCCTGTGCTTCCGGGGCCGACCAACTCACAACCGGAACCGCCATCCTCGAAGCAGTGACAAAAATCTACGGT
AAGAATACCAGCATCATCCTCGCCGGCCATGATCGCGGCGCACGAATCGTACAACGACTCGCCGTCAACATCGAT
CATTTTCCGCACGTTCGAGCCATGGGTGTCTTCATTGTCGACATCCTCCCCGTTTACGAAAAGTTCAGATCATTC
TCCAAGCCGCAAAACGCCATCGGATATTATCACTGGTCGTTTCTTCCACGGGGTGCCTTTGCTCTCGACATGATA
AAGGCGTACGGAGGCGGCAACTTCATCAAGGGTTCTCTGCAAGGAGGCAGCGGGCCCAACGAGAAAGGGCTCAAG
CTCTTCAAGTCGGACAACGCCTGGGAGGTTTACGCCAACTTCTTCGATCAAGTGAGCATCGCCAACTACTCCATT
AGTGATTTTCGTTCCTCCGCCACTGTCGAATACGAGACGCAGGAGGCAGATCAGAAAGCTGGTCGAAAGATTAAG
ATGCCATGCTTCGTCTTTTACTCGGAACACATGCAGACGCGTTCTGGTCTGAGCAGTTCGGGCTTCAGCATGGCT
GAGATCTGGCCGAATTGGGTTGCCACGGGGGTCAAGTTGATCTTGGAAGGCGTTGGGCGCGGGATTGGACACTTT
ATCGTTGAGGAGGCTCCAGAAGACACTATACAAGCGATGGACAGCTTCATGGATGACCTAGAGGTCGACAAAGCT
GAAGCCTAG
Gene >Ophcf2|02961
ATGTTTCCCAAGCTCCTCATCCAACTCGTCAGCTTCTTCCTCGCGGCCACAGGAAGCCTCGCAGCCGCCGATGCA
GAATGCCGTCCCGCGGAAAAGCAGCTGAACAAGACACTAGCCAACTATCGACTTCCAGGCCGTAACGGCCACTCC
TCCTACCTGACCCATGACTTTATCCCCACGACGTGTGGCTCACGCCTCTCGGTTCACTACACGGAACCGACTGTC
TACGGGAACCTGACTGGCTCGGCGAAGAAGCCCGTCTTGATCCTGCTGCATGGTTGGCCGCAGTCGAGTTATGCC
TGGCGTCATGTCACGCAGGCTCTGTCCGAGCGGGTGCCCGTGATAGCGTTTGATGTAAGAAACATGATGGCAGTA
AACCGTCTTGAGACCTGGGCTTTCTGACTGGTTATCAAGACTCCCGGCTACGGACTCTCCTCTCCCTGTGCTTCC
GGGGCCGACCAACTCACAACCGGAACCGCCATCCTCGAAGCAGTGACAAAAATCTACGGTAAGAATACCAGCATC
ATCCTCGCCGGCCATGATCGCGGCGCACGAATCGTACAACGACTCGCCGTCAACATCGATCATTTTCCGCACGTT
CGAGCCATGGGTGTCTTCATTGTCGACATCCTCCCCGTTTACGAAAAGTTCAGATCATTCTCCAAGCCGCAAAAC
GCCATCGGATATTATCACTGGTCGTTTCTTCCACGGGGTGCCTTTGCTCTCGACATGATAAAGGCGTACGGAGGC
GGCAACTTCATCAAGGGTTCTCTGCAAGGAGGCAGCGGGCCCAACGAGAAAGGGCTCAAGCTCTTCAAGTCGGAC
AACGCCTGGGAGGTTTACGCCAACTTCTTCGATCAAGTGAGCATCGCCAACTACTCCATTAGTGATTTTCGTTCC
TCCGCCACTGTCGAATACGAGACGCAGGAGGCAGATCAGAAAGCTGGTCGAAAGATTAAGATGCCATGCTTCGTC
TTTTACTCGGAACACATGCAGACGCGTTCTGGTCTGAGCAGTTCGGGCTTCAGCATGGCTGAGATCTGGCCGAAT
TGGGTTGCCACGGGGGTCAAGTTGATCTTGGAAGGCGTTGGGCGCGGGATTGGACACTTTATCGTTGAGGAGGCT
CCAGAAGACACTATACAAGCGATGGACAGCTTCATGGATGACCTAGAGGTCGACAAAGCTGAAGCCTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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