Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|02934
Gene name
Locationscaffold_03:87963..89636
Strand+
Gene length (bp)1673
Transcript length (bp)1551
Coding sequence length (bp)1551
Protein length (aa) 517

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00083 Sugar_tr Sugar (and other) transporter 1.1E-78 42 493
PF07690 MFS_1 Major Facilitator Superfamily 1.2E-11 46 439

GO

GO Term Description Terminal node
GO:0022857 transmembrane transporter activity Yes
GO:0055085 transmembrane transport Yes
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0051179 localization No
GO:0008150 biological_process No
GO:0031224 intrinsic component of membrane No
GO:0006810 transport No
GO:0009987 cellular process No
GO:0003674 molecular_function No
GO:0005215 transporter activity No
GO:0110165 cellular anatomical entity No
GO:0051234 establishment of localization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 53 0.5

Transmembrane Domains

Domain # Start End Length
1 119 136 17
2 141 163 22
3 176 198 22
4 213 235 22
5 296 318 22
6 328 350 22
7 357 376 19
8 391 413 22
9 426 448 22
10 459 476 17

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 6.27 2.23 10.31
Alive In ants, during behavior modification 5.57 1.81 9.34
Dead In ants, recently dead 4.69 1.33 8.05

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.737188 no
Alive Dead 0.575213 no
Dead Fungus 0.356313 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|02934
MTNSAPKSSADAEVDPVPAGSDVAEDGFVETVRLYPKAIGWSLFMSLGVIMAAFDPQLIGSLYSTPQFARDFGSR
YGEDEYVIGADWQSGLNMGSPIGQIVGALGAAYPMEWFGRKRTFAVCVVATAGLVMIQFFARSLSVLLVGELLGG
LVLGVFVCLAPVYSSEVCPVAIRGHLTSYINASFVIGQLLANVVTAGTQRLRDHWAYSLPFSMQWFWAAILMVGL
WFVPESPWWLVRKGRMREAEQSLRRLASPAVDVSKTLALIVETDRLELEMESGSTYRDCFRSVNLRRTEISIGIY
CAQVLSGIYLITYGTFFFQQAGLPTDRAFDMSIGFSAVGLLGALISWFLLVGTGRRVLYVNGLAVLGLLQLLIGV
LDCVPGRPSGIVWAESGLMLAWNLVYNVTIGPICFVLLSECSATRVRSKTVAVATAAQALLGIVMTVSIPYLINP
TQANAQGKLGFFFGGLACLSLIWAYFRVPETRGRTFEELDLLFGRGVSAREFGGHDLNGDVDAIGN*
Coding >Ophcf2|02934
ATGACCAACTCCGCCCCGAAATCCAGCGCCGACGCCGAAGTGGACCCCGTACCGGCCGGCTCCGATGTCGCCGAG
GACGGGTTCGTCGAGACGGTCAGGCTGTATCCCAAGGCTATCGGCTGGTCGCTCTTCATGTCGCTGGGGGTCATC
ATGGCCGCCTTCGACCCGCAGCTCATCGGCAGCCTGTACTCGACGCCGCAGTTCGCCCGCGACTTTGGCAGTCGC
TACGGGGAAGATGAGTATGTCATTGGCGCGGACTGGCAGAGCGGACTGAACATGGGCTCGCCCATCGGACAGATC
GTCGGCGCCCTGGGAGCGGCCTATCCGATGGAGTGGTTCGGAAGGAAGCGGACGTTTGCCGTCTGCGTTGTCGCC
ACGGCTGGTCTGGTGATGATTCAGTTCTTTGCCAGGAGTCTGAGCGTGTTGCTGGTTGGCGAGCTTTTAGGTGGT
CTGGTGTTGGGAGTCTTTGTCTGCCTTGCTCCCGTCTACAGCTCCGAAGTGTGTCCCGTGGCGATCCGAGGTCAT
CTTACATCGTACATCAACGCCTCGTTCGTCATCGGCCAGCTGCTCGCCAACGTCGTTACAGCCGGCACGCAGCGG
CTACGAGATCACTGGGCGTACTCGCTTCCCTTTTCGATGCAGTGGTTCTGGGCTGCCATCCTGATGGTTGGTCTC
TGGTTCGTGCCCGAGAGCCCGTGGTGGCTGGTTCGAAAGGGGAGGATGCGGGAGGCTGAGCAGTCACTCCGAAGA
CTGGCTTCTCCGGCTGTCGACGTCTCCAAGACGCTGGCACTAATTGTCGAGACGGATCGGCTAGAGCTGGAGATG
GAGTCTGGGAGCACTTATCGTGACTGCTTCCGGTCTGTCAACCTGAGACGGACGGAGATATCGATTGGCATCTAC
TGCGCTCAGGTCTTGTCTGGCATCTATCTCATCACCTACGGCACCTTTTTCTTTCAGCAGGCAGGGTTGCCGACG
GACAGGGCGTTTGACATGTCGATAGGCTTCTCCGCTGTCGGCCTCCTTGGCGCCTTGATATCATGGTTCCTCCTC
GTCGGCACAGGCCGTCGCGTGCTCTACGTCAACGGCTTGGCCGTCCTTGGCCTCCTCCAACTCCTCATCGGCGTC
CTTGACTGCGTGCCGGGACGACCGAGCGGCATCGTATGGGCCGAGTCCGGGTTGATGCTGGCGTGGAACCTGGTT
TACAATGTGACGATAGGACCCATTTGCTTCGTCCTGCTATCCGAGTGCTCGGCTACGCGGGTAAGATCCAAGACG
GTGGCGGTGGCGACGGCGGCGCAGGCCCTGTTGGGTATCGTGATGACCGTCTCAATACCGTACCTGATCAACCCT
ACGCAGGCGAATGCGCAAGGAAAGTTGGGCTTCTTCTTCGGCGGCTTGGCTTGCCTCTCGCTGATTTGGGCTTAC
TTTCGCGTTCCGGAGACCCGGGGAAGGACGTTTGAGGAGTTGGATTTGTTGTTTGGGAGGGGGGTTTCTGCGAGG
GAGTTTGGGGGTCATGATCTGAATGGGGACGTGGACGCGATTGGGAACTGA
Transcript >Ophcf2|02934
ATGACCAACTCCGCCCCGAAATCCAGCGCCGACGCCGAAGTGGACCCCGTACCGGCCGGCTCCGATGTCGCCGAG
GACGGGTTCGTCGAGACGGTCAGGCTGTATCCCAAGGCTATCGGCTGGTCGCTCTTCATGTCGCTGGGGGTCATC
ATGGCCGCCTTCGACCCGCAGCTCATCGGCAGCCTGTACTCGACGCCGCAGTTCGCCCGCGACTTTGGCAGTCGC
TACGGGGAAGATGAGTATGTCATTGGCGCGGACTGGCAGAGCGGACTGAACATGGGCTCGCCCATCGGACAGATC
GTCGGCGCCCTGGGAGCGGCCTATCCGATGGAGTGGTTCGGAAGGAAGCGGACGTTTGCCGTCTGCGTTGTCGCC
ACGGCTGGTCTGGTGATGATTCAGTTCTTTGCCAGGAGTCTGAGCGTGTTGCTGGTTGGCGAGCTTTTAGGTGGT
CTGGTGTTGGGAGTCTTTGTCTGCCTTGCTCCCGTCTACAGCTCCGAAGTGTGTCCCGTGGCGATCCGAGGTCAT
CTTACATCGTACATCAACGCCTCGTTCGTCATCGGCCAGCTGCTCGCCAACGTCGTTACAGCCGGCACGCAGCGG
CTACGAGATCACTGGGCGTACTCGCTTCCCTTTTCGATGCAGTGGTTCTGGGCTGCCATCCTGATGGTTGGTCTC
TGGTTCGTGCCCGAGAGCCCGTGGTGGCTGGTTCGAAAGGGGAGGATGCGGGAGGCTGAGCAGTCACTCCGAAGA
CTGGCTTCTCCGGCTGTCGACGTCTCCAAGACGCTGGCACTAATTGTCGAGACGGATCGGCTAGAGCTGGAGATG
GAGTCTGGGAGCACTTATCGTGACTGCTTCCGGTCTGTCAACCTGAGACGGACGGAGATATCGATTGGCATCTAC
TGCGCTCAGGTCTTGTCTGGCATCTATCTCATCACCTACGGCACCTTTTTCTTTCAGCAGGCAGGGTTGCCGACG
GACAGGGCGTTTGACATGTCGATAGGCTTCTCCGCTGTCGGCCTCCTTGGCGCCTTGATATCATGGTTCCTCCTC
GTCGGCACAGGCCGTCGCGTGCTCTACGTCAACGGCTTGGCCGTCCTTGGCCTCCTCCAACTCCTCATCGGCGTC
CTTGACTGCGTGCCGGGACGACCGAGCGGCATCGTATGGGCCGAGTCCGGGTTGATGCTGGCGTGGAACCTGGTT
TACAATGTGACGATAGGACCCATTTGCTTCGTCCTGCTATCCGAGTGCTCGGCTACGCGGGTAAGATCCAAGACG
GTGGCGGTGGCGACGGCGGCGCAGGCCCTGTTGGGTATCGTGATGACCGTCTCAATACCGTACCTGATCAACCCT
ACGCAGGCGAATGCGCAAGGAAAGTTGGGCTTCTTCTTCGGCGGCTTGGCTTGCCTCTCGCTGATTTGGGCTTAC
TTTCGCGTTCCGGAGACCCGGGGAAGGACGTTTGAGGAGTTGGATTTGTTGTTTGGGAGGGGGGTTTCTGCGAGG
GAGTTTGGGGGTCATGATCTGAATGGGGACGTGGACGCGATTGGGAACTGA
Gene >Ophcf2|02934
ATGACCAACTCCGCCCCGAAATCCAGCGCCGACGCCGAAGTGGACCCCGTACCGGCCGGCTCCGATGTCGCCGAG
GACGGGTTCGTCGAGACGGTCAGGCTGTATCCCAAGGCTATCGGCTGGTCGCTCTTCATGTCGCTGGGGGTCATC
ATGGCCGCCTTCGACCCGCAGCTCATCGGCAGCCTGTACTCGACGCCGCAGTTCGCCCGCGACTTTGGCAGTCGC
TACGGGGAAGATGAGGTGAAGAAGAAGACTCCAACTTGTTTTCCCGGCATGGTCGGGCTGACGTGTGAGGCTCAA
GTATGTCATTGGCGCGGACTGGCAGAGCGGACTGAACATGGGCTCGCCCATCGGACAGATCGTCGGCGCCCTGGG
AGCGGCCTATCCGATGGAGTGGTTCGGAAGGAAGCGGACGTTTGCCGTCTGCGTTGTCGCCACGGCTGGTCTGGT
GATGATTCAGTTCTTTGCCAGGAGTCTGAGCGTGTTGCTGGTTGGCGAGCTTTTAGGTGGTCTGGTGTTGGGAGT
CTTTGTCTGCCTTGCTCCCGTCTACAGCTCCGAAGTGTGTCCCGTGGCGATCCGAGGTCATCTTACATCGTACAT
CAACGCCTCGTTCGTCATCGGCCAGCTGCTCGCCAACGTCGTTACAGCCGGCACGCAGCGGCTACGAGATCACTG
GGCGTACTCGCTTCCCTTTTCGATGCAGTGGTTCTGGGCTGCCATCCTGATGGTTGGTCTCTGGTTCGTGCCCGA
GAGCCCGTGGTGGCTGGTTCGAAAGGGGAGGATGCGGGAGGCTGAGCAGTCACTCCGAAGACTGGCTTCTCCGGC
TGTCGACGTCTCCAAGACGCTGGCACTAATTGTCGAGACGGATCGGCTAGAGCTGGAGATGGAGTCTGGGAGCAC
TTATCGTGACTGCTTCCGGTCTGTCAACCTGAGACGGACGGAGATATCGATTGGCATCTACTGCGCTCAGGTCTT
GTCTGGCATCTATCTCATCACCTACGGCACCTTTTTCTTTCAGCAGGCAGGGTTGCCGACGGACAGGGCGTTTGA
CATGTCGATAGGCTTCTCCGGTAAGTTCTGTGACGTTGACCACGTTCTCCTCTTCTCGTCGACGACACTGACTGC
TCCCAGCTGTCGGCCTCCTTGGCGCCTTGATATCATGGTTCCTCCTCGTCGGCACAGGCCGTCGCGTGCTCTACG
TCAACGGCTTGGCCGTCCTTGGCCTCCTCCAACTCCTCATCGGCGTCCTTGACTGCGTGCCGGGACGACCGAGCG
GCATCGTATGGGCCGAGTCCGGGTTGATGCTGGCGTGGAACCTGGTTTACAATGTGACGATAGGACCCATTTGCT
TCGTCCTGCTATCCGAGTGCTCGGCTACGCGGGTAAGATCCAAGACGGTGGCGGTGGCGACGGCGGCGCAGGCCC
TGTTGGGTATCGTGATGACCGTCTCAATACCGTACCTGATCAACCCTACGCAGGCGAATGCGCAAGGAAAGTTGG
GCTTCTTCTTCGGCGGCTTGGCTTGCCTCTCGCTGATTTGGGCTTACTTTCGCGTTCCGGAGACCCGGGGAAGGA
CGTTTGAGGAGTTGGATTTGTTGTTTGGGAGGGGGGTTTCTGCGAGGGAGTTTGGGGGTCATGATCTGAATGGGG
ACGTGGACGCGATTGGGAACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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