© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|02934 |
| Gene name | |
| Location | scaffold_03:87963..89636 |
| Strand | + |
| Gene length (bp) | 1673 |
| Transcript length (bp) | 1551 |
| Coding sequence length (bp) | 1551 |
| Protein length (aa) | 517 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 1.1E-78 | 42 | 493 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.2E-11 | 46 | 439 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 53 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 119 | 136 | 17 |
| 2 | 141 | 163 | 22 |
| 3 | 176 | 198 | 22 |
| 4 | 213 | 235 | 22 |
| 5 | 296 | 318 | 22 |
| 6 | 328 | 350 | 22 |
| 7 | 357 | 376 | 19 |
| 8 | 391 | 413 | 22 |
| 9 | 426 | 448 | 22 |
| 10 | 459 | 476 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02934 MTNSAPKSSADAEVDPVPAGSDVAEDGFVETVRLYPKAIGWSLFMSLGVIMAAFDPQLIGSLYSTPQFARDFGSR YGEDEYVIGADWQSGLNMGSPIGQIVGALGAAYPMEWFGRKRTFAVCVVATAGLVMIQFFARSLSVLLVGELLGG LVLGVFVCLAPVYSSEVCPVAIRGHLTSYINASFVIGQLLANVVTAGTQRLRDHWAYSLPFSMQWFWAAILMVGL WFVPESPWWLVRKGRMREAEQSLRRLASPAVDVSKTLALIVETDRLELEMESGSTYRDCFRSVNLRRTEISIGIY CAQVLSGIYLITYGTFFFQQAGLPTDRAFDMSIGFSAVGLLGALISWFLLVGTGRRVLYVNGLAVLGLLQLLIGV LDCVPGRPSGIVWAESGLMLAWNLVYNVTIGPICFVLLSECSATRVRSKTVAVATAAQALLGIVMTVSIPYLINP TQANAQGKLGFFFGGLACLSLIWAYFRVPETRGRTFEELDLLFGRGVSAREFGGHDLNGDVDAIGN* |
| Coding | >Ophcf2|02934 ATGACCAACTCCGCCCCGAAATCCAGCGCCGACGCCGAAGTGGACCCCGTACCGGCCGGCTCCGATGTCGCCGAG GACGGGTTCGTCGAGACGGTCAGGCTGTATCCCAAGGCTATCGGCTGGTCGCTCTTCATGTCGCTGGGGGTCATC ATGGCCGCCTTCGACCCGCAGCTCATCGGCAGCCTGTACTCGACGCCGCAGTTCGCCCGCGACTTTGGCAGTCGC TACGGGGAAGATGAGTATGTCATTGGCGCGGACTGGCAGAGCGGACTGAACATGGGCTCGCCCATCGGACAGATC GTCGGCGCCCTGGGAGCGGCCTATCCGATGGAGTGGTTCGGAAGGAAGCGGACGTTTGCCGTCTGCGTTGTCGCC ACGGCTGGTCTGGTGATGATTCAGTTCTTTGCCAGGAGTCTGAGCGTGTTGCTGGTTGGCGAGCTTTTAGGTGGT CTGGTGTTGGGAGTCTTTGTCTGCCTTGCTCCCGTCTACAGCTCCGAAGTGTGTCCCGTGGCGATCCGAGGTCAT CTTACATCGTACATCAACGCCTCGTTCGTCATCGGCCAGCTGCTCGCCAACGTCGTTACAGCCGGCACGCAGCGG CTACGAGATCACTGGGCGTACTCGCTTCCCTTTTCGATGCAGTGGTTCTGGGCTGCCATCCTGATGGTTGGTCTC TGGTTCGTGCCCGAGAGCCCGTGGTGGCTGGTTCGAAAGGGGAGGATGCGGGAGGCTGAGCAGTCACTCCGAAGA CTGGCTTCTCCGGCTGTCGACGTCTCCAAGACGCTGGCACTAATTGTCGAGACGGATCGGCTAGAGCTGGAGATG GAGTCTGGGAGCACTTATCGTGACTGCTTCCGGTCTGTCAACCTGAGACGGACGGAGATATCGATTGGCATCTAC TGCGCTCAGGTCTTGTCTGGCATCTATCTCATCACCTACGGCACCTTTTTCTTTCAGCAGGCAGGGTTGCCGACG GACAGGGCGTTTGACATGTCGATAGGCTTCTCCGCTGTCGGCCTCCTTGGCGCCTTGATATCATGGTTCCTCCTC GTCGGCACAGGCCGTCGCGTGCTCTACGTCAACGGCTTGGCCGTCCTTGGCCTCCTCCAACTCCTCATCGGCGTC CTTGACTGCGTGCCGGGACGACCGAGCGGCATCGTATGGGCCGAGTCCGGGTTGATGCTGGCGTGGAACCTGGTT TACAATGTGACGATAGGACCCATTTGCTTCGTCCTGCTATCCGAGTGCTCGGCTACGCGGGTAAGATCCAAGACG GTGGCGGTGGCGACGGCGGCGCAGGCCCTGTTGGGTATCGTGATGACCGTCTCAATACCGTACCTGATCAACCCT ACGCAGGCGAATGCGCAAGGAAAGTTGGGCTTCTTCTTCGGCGGCTTGGCTTGCCTCTCGCTGATTTGGGCTTAC TTTCGCGTTCCGGAGACCCGGGGAAGGACGTTTGAGGAGTTGGATTTGTTGTTTGGGAGGGGGGTTTCTGCGAGG GAGTTTGGGGGTCATGATCTGAATGGGGACGTGGACGCGATTGGGAACTGA |
| Transcript | >Ophcf2|02934 ATGACCAACTCCGCCCCGAAATCCAGCGCCGACGCCGAAGTGGACCCCGTACCGGCCGGCTCCGATGTCGCCGAG GACGGGTTCGTCGAGACGGTCAGGCTGTATCCCAAGGCTATCGGCTGGTCGCTCTTCATGTCGCTGGGGGTCATC ATGGCCGCCTTCGACCCGCAGCTCATCGGCAGCCTGTACTCGACGCCGCAGTTCGCCCGCGACTTTGGCAGTCGC TACGGGGAAGATGAGTATGTCATTGGCGCGGACTGGCAGAGCGGACTGAACATGGGCTCGCCCATCGGACAGATC GTCGGCGCCCTGGGAGCGGCCTATCCGATGGAGTGGTTCGGAAGGAAGCGGACGTTTGCCGTCTGCGTTGTCGCC ACGGCTGGTCTGGTGATGATTCAGTTCTTTGCCAGGAGTCTGAGCGTGTTGCTGGTTGGCGAGCTTTTAGGTGGT CTGGTGTTGGGAGTCTTTGTCTGCCTTGCTCCCGTCTACAGCTCCGAAGTGTGTCCCGTGGCGATCCGAGGTCAT CTTACATCGTACATCAACGCCTCGTTCGTCATCGGCCAGCTGCTCGCCAACGTCGTTACAGCCGGCACGCAGCGG CTACGAGATCACTGGGCGTACTCGCTTCCCTTTTCGATGCAGTGGTTCTGGGCTGCCATCCTGATGGTTGGTCTC TGGTTCGTGCCCGAGAGCCCGTGGTGGCTGGTTCGAAAGGGGAGGATGCGGGAGGCTGAGCAGTCACTCCGAAGA CTGGCTTCTCCGGCTGTCGACGTCTCCAAGACGCTGGCACTAATTGTCGAGACGGATCGGCTAGAGCTGGAGATG GAGTCTGGGAGCACTTATCGTGACTGCTTCCGGTCTGTCAACCTGAGACGGACGGAGATATCGATTGGCATCTAC TGCGCTCAGGTCTTGTCTGGCATCTATCTCATCACCTACGGCACCTTTTTCTTTCAGCAGGCAGGGTTGCCGACG GACAGGGCGTTTGACATGTCGATAGGCTTCTCCGCTGTCGGCCTCCTTGGCGCCTTGATATCATGGTTCCTCCTC GTCGGCACAGGCCGTCGCGTGCTCTACGTCAACGGCTTGGCCGTCCTTGGCCTCCTCCAACTCCTCATCGGCGTC CTTGACTGCGTGCCGGGACGACCGAGCGGCATCGTATGGGCCGAGTCCGGGTTGATGCTGGCGTGGAACCTGGTT TACAATGTGACGATAGGACCCATTTGCTTCGTCCTGCTATCCGAGTGCTCGGCTACGCGGGTAAGATCCAAGACG GTGGCGGTGGCGACGGCGGCGCAGGCCCTGTTGGGTATCGTGATGACCGTCTCAATACCGTACCTGATCAACCCT ACGCAGGCGAATGCGCAAGGAAAGTTGGGCTTCTTCTTCGGCGGCTTGGCTTGCCTCTCGCTGATTTGGGCTTAC TTTCGCGTTCCGGAGACCCGGGGAAGGACGTTTGAGGAGTTGGATTTGTTGTTTGGGAGGGGGGTTTCTGCGAGG GAGTTTGGGGGTCATGATCTGAATGGGGACGTGGACGCGATTGGGAACTGA |
| Gene | >Ophcf2|02934 ATGACCAACTCCGCCCCGAAATCCAGCGCCGACGCCGAAGTGGACCCCGTACCGGCCGGCTCCGATGTCGCCGAG GACGGGTTCGTCGAGACGGTCAGGCTGTATCCCAAGGCTATCGGCTGGTCGCTCTTCATGTCGCTGGGGGTCATC ATGGCCGCCTTCGACCCGCAGCTCATCGGCAGCCTGTACTCGACGCCGCAGTTCGCCCGCGACTTTGGCAGTCGC TACGGGGAAGATGAGGTGAAGAAGAAGACTCCAACTTGTTTTCCCGGCATGGTCGGGCTGACGTGTGAGGCTCAA GTATGTCATTGGCGCGGACTGGCAGAGCGGACTGAACATGGGCTCGCCCATCGGACAGATCGTCGGCGCCCTGGG AGCGGCCTATCCGATGGAGTGGTTCGGAAGGAAGCGGACGTTTGCCGTCTGCGTTGTCGCCACGGCTGGTCTGGT GATGATTCAGTTCTTTGCCAGGAGTCTGAGCGTGTTGCTGGTTGGCGAGCTTTTAGGTGGTCTGGTGTTGGGAGT CTTTGTCTGCCTTGCTCCCGTCTACAGCTCCGAAGTGTGTCCCGTGGCGATCCGAGGTCATCTTACATCGTACAT CAACGCCTCGTTCGTCATCGGCCAGCTGCTCGCCAACGTCGTTACAGCCGGCACGCAGCGGCTACGAGATCACTG GGCGTACTCGCTTCCCTTTTCGATGCAGTGGTTCTGGGCTGCCATCCTGATGGTTGGTCTCTGGTTCGTGCCCGA GAGCCCGTGGTGGCTGGTTCGAAAGGGGAGGATGCGGGAGGCTGAGCAGTCACTCCGAAGACTGGCTTCTCCGGC TGTCGACGTCTCCAAGACGCTGGCACTAATTGTCGAGACGGATCGGCTAGAGCTGGAGATGGAGTCTGGGAGCAC TTATCGTGACTGCTTCCGGTCTGTCAACCTGAGACGGACGGAGATATCGATTGGCATCTACTGCGCTCAGGTCTT GTCTGGCATCTATCTCATCACCTACGGCACCTTTTTCTTTCAGCAGGCAGGGTTGCCGACGGACAGGGCGTTTGA CATGTCGATAGGCTTCTCCGGTAAGTTCTGTGACGTTGACCACGTTCTCCTCTTCTCGTCGACGACACTGACTGC TCCCAGCTGTCGGCCTCCTTGGCGCCTTGATATCATGGTTCCTCCTCGTCGGCACAGGCCGTCGCGTGCTCTACG TCAACGGCTTGGCCGTCCTTGGCCTCCTCCAACTCCTCATCGGCGTCCTTGACTGCGTGCCGGGACGACCGAGCG GCATCGTATGGGCCGAGTCCGGGTTGATGCTGGCGTGGAACCTGGTTTACAATGTGACGATAGGACCCATTTGCT TCGTCCTGCTATCCGAGTGCTCGGCTACGCGGGTAAGATCCAAGACGGTGGCGGTGGCGACGGCGGCGCAGGCCC TGTTGGGTATCGTGATGACCGTCTCAATACCGTACCTGATCAACCCTACGCAGGCGAATGCGCAAGGAAAGTTGG GCTTCTTCTTCGGCGGCTTGGCTTGCCTCTCGCTGATTTGGGCTTACTTTCGCGTTCCGGAGACCCGGGGAAGGA CGTTTGAGGAGTTGGATTTGTTGTTTGGGAGGGGGGTTTCTGCGAGGGAGTTTGGGGGTCATGATCTGAATGGGG ACGTGGACGCGATTGGGAACTGA |