© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02865 |
| Gene name | |
| Location | scaffold_02:4970870..4972064 |
| Strand | + |
| Gene length (bp) | 1194 |
| Transcript length (bp) | 1077 |
| Coding sequence length (bp) | 1077 |
| Protein length (aa) | 359 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 8.4E-10 | 24 | 74 |
| PF04193 | PQ-loop | PQ loop repeat | 9.6E-14 | 176 | 229 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1854 | 0.0627 | 0.0644 | 0.1899 | 0.2632 | 0.0128 | 0.3388 | 0.7705 | 0.4547 | 0.1427 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 39 | 19 |
| 2 | 52 | 74 | 22 |
| 3 | 99 | 121 | 22 |
| 4 | 144 | 166 | 22 |
| 5 | 171 | 193 | 22 |
| 6 | 205 | 227 | 22 |
| 7 | 237 | 259 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 4827 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02865 MAHMWELDNSACEHLRSPSYLELVVSIVILIGLLISYLPQHYRIISRGTSEGISPYFVLLGTTSATAGFANILTV PPSREAIGCCRELGAFDCAAGLLGVAQLGVQWLCFTLILVLFLIFFRYREANVPQDELGGESPKWQTAVAVGLLC VFHGLIVVILTGVFALALPSYLTTWANSLGVMAALLAAVQYVPQIWTTYRLKHVGSLSIPMMCMQTPGGFLFAAS LFARLGVAGWSTWVIYLLTATMQGIVLVLGVYYEMDSRRHEGSMPPDLSVMPPSPLEGSPSSQRPAANRTYSEGW ERGLPGPFTGHPERYAETEEDLDHMQEREARAIARENQPLLRPGGIGNPRRKYGSSRG* |
| Coding | >Ophcf2|02865 ATGGCCCACATGTGGGAGTTGGACAACAGCGCATGCGAGCATCTCCGATCGCCGTCATATCTCGAGCTCGTCGTT TCCATCGTCATCCTCATCGGACTACTGATCTCGTACCTCCCGCAGCACTACCGCATCATCTCTCGCGGAACTTCG GAAGGAATCTCGCCGTATTTCGTCCTCCTCGGCACCACGTCTGCCACCGCCGGCTTCGCCAATATTCTGACCGTC CCGCCCTCGAGGGAGGCTATTGGTTGTTGCAGGGAGCTCGGTGCTTTTGACTGCGCTGCGGGCTTGCTTGGCGTT GCTCAACTTGGAGTGCAGTGGCTTTGCTTTACGCTCATCCTCGTCCTCTTCCTCATCTTCTTCCGCTACCGGGAG GCCAATGTCCCTCAAGACGAGCTAGGAGGGGAGTCGCCCAAGTGGCAAACGGCCGTCGCCGTCGGCCTTTTGTGC GTCTTTCACGGCCTCATCGTCGTCATTCTCACCGGCGTCTTCGCCTTGGCGTTACCCAGCTACCTCACCACCTGG GCCAACTCCCTCGGCGTCATGGCCGCCCTCCTGGCCGCGGTCCAGTACGTGCCGCAGATATGGACGACATACCGC CTCAAGCACGTCGGAAGTCTCAGCATCCCCATGATGTGCATGCAGACACCCGGCGGCTTCCTCTTCGCCGCCAGT CTCTTTGCCCGACTGGGCGTCGCCGGCTGGAGCACATGGGTCATCTACCTATTGACAGCAACGATGCAGGGCATC GTCCTCGTCCTCGGCGTCTACTACGAAATGGACTCGCGTCGACATGAAGGCAGTATGCCCCCCGATCTGAGCGTC ATGCCGCCCTCGCCGCTGGAAGGCTCCCCCTCATCACAACGACCGGCAGCGAACCGCACGTATTCGGAAGGATGG GAACGCGGGTTGCCGGGGCCTTTTACCGGCCATCCAGAGCGCTACGCTGAGACGGAGGAGGATCTCGACCACATG CAGGAGCGGGAGGCGCGAGCCATTGCGCGAGAGAACCAGCCGTTACTTCGACCGGGTGGCATTGGCAACCCGCGA CGCAAGTACGGTTCTAGCCGCGGCTGA |
| Transcript | >Ophcf2|02865 ATGGCCCACATGTGGGAGTTGGACAACAGCGCATGCGAGCATCTCCGATCGCCGTCATATCTCGAGCTCGTCGTT TCCATCGTCATCCTCATCGGACTACTGATCTCGTACCTCCCGCAGCACTACCGCATCATCTCTCGCGGAACTTCG GAAGGAATCTCGCCGTATTTCGTCCTCCTCGGCACCACGTCTGCCACCGCCGGCTTCGCCAATATTCTGACCGTC CCGCCCTCGAGGGAGGCTATTGGTTGTTGCAGGGAGCTCGGTGCTTTTGACTGCGCTGCGGGCTTGCTTGGCGTT GCTCAACTTGGAGTGCAGTGGCTTTGCTTTACGCTCATCCTCGTCCTCTTCCTCATCTTCTTCCGCTACCGGGAG GCCAATGTCCCTCAAGACGAGCTAGGAGGGGAGTCGCCCAAGTGGCAAACGGCCGTCGCCGTCGGCCTTTTGTGC GTCTTTCACGGCCTCATCGTCGTCATTCTCACCGGCGTCTTCGCCTTGGCGTTACCCAGCTACCTCACCACCTGG GCCAACTCCCTCGGCGTCATGGCCGCCCTCCTGGCCGCGGTCCAGTACGTGCCGCAGATATGGACGACATACCGC CTCAAGCACGTCGGAAGTCTCAGCATCCCCATGATGTGCATGCAGACACCCGGCGGCTTCCTCTTCGCCGCCAGT CTCTTTGCCCGACTGGGCGTCGCCGGCTGGAGCACATGGGTCATCTACCTATTGACAGCAACGATGCAGGGCATC GTCCTCGTCCTCGGCGTCTACTACGAAATGGACTCGCGTCGACATGAAGGCAGTATGCCCCCCGATCTGAGCGTC ATGCCGCCCTCGCCGCTGGAAGGCTCCCCCTCATCACAACGACCGGCAGCGAACCGCACGTATTCGGAAGGATGG GAACGCGGGTTGCCGGGGCCTTTTACCGGCCATCCAGAGCGCTACGCTGAGACGGAGGAGGATCTCGACCACATG CAGGAGCGGGAGGCGCGAGCCATTGCGCGAGAGAACCAGCCGTTACTTCGACCGGGTGGCATTGGCAACCCGCGA CGCAAGTACGGTTCTAGCCGCGGCTGA |
| Gene | >Ophcf2|02865 ATGGCCCACATGTGGGAGTTGGACAACAGCGCATGCGAGCATCTCCGATCGCCGTCATATCTCGAGCTCGTCGTT TCCATGTGCGCACATGCCCTCCCTTTCCTTCCCCTTTGTCTCACTCGCTAACGACGACGGACGACAGCGTCATCC TCATCGGACTACTGATCTCGTACCTCCCGCAGCACTACCGCATCATCTCTCGCGGAACTTCGGAAGGAATCTCGC CGTATTTCGTCCTCCTCGGCACCACGTCTGCCACCGCCGGCTTCGCCAATATTCTGACCGTCCCGCCCTCGAGGG AGGCTATTGGTTGTTGCAGGGAGCTCGGTGCTTTTGACTGCGCTGCGGGCTTGCTTGGCGTTGCTCAACTTGGAG TGCAGTGGCTTTGCTTTACGCTCATGTAAGCCCGTCTCCGGGATGCGGCGGCGGTGGTGCACCGCGCTGACGCGT CACAGCCTCGTCCTCTTCCTCATCTTCTTCCGCTACCGGGAGGCCAATGTCCCTCAAGACGAGCTAGGAGGGGAG TCGCCCAAGTGGCAAACGGCCGTCGCCGTCGGCCTTTTGTGCGTCTTTCACGGCCTCATCGTCGTCATTCTCACC GGCGTCTTCGCCTTGGCGTTACCCAGCTACCTCACCACCTGGGCCAACTCCCTCGGCGTCATGGCCGCCCTCCTG GCCGCGGTCCAGTACGTGCCGCAGATATGGACGACATACCGCCTCAAGCACGTCGGAAGTCTCAGCATCCCCATG ATGTGCATGCAGACACCCGGCGGCTTCCTCTTCGCCGCCAGTCTCTTTGCCCGACTGGGCGTCGCCGGCTGGAGC ACATGGGTCATCTACCTATTGACAGCAACGATGCAGGGCATCGTCCTCGTCCTCGGCGTCTACTACGAAATGGAC TCGCGTCGACATGAAGGCAGTATGCCCCCCGATCTGAGCGTCATGCCGCCCTCGCCGCTGGAAGGCTCCCCCTCA TCACAACGACCGGCAGCGAACCGCACGTATTCGGAAGGATGGGAACGCGGGTTGCCGGGGCCTTTTACCGGCCAT CCAGAGCGCTACGCTGAGACGGAGGAGGATCTCGACCACATGCAGGAGCGGGAGGCGCGAGCCATTGCGCGAGAG AACCAGCCGTTACTTCGACCGGGTGGCATTGGCAACCCGCGACGCAAGTACGGTTCTAGCCGCGGCTGA |