© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02846 |
| Gene name | |
| Location | scaffold_02:4921691..4922733 |
| Strand | + |
| Gene length (bp) | 1042 |
| Transcript length (bp) | 984 |
| Coding sequence length (bp) | 984 |
| Protein length (aa) | 328 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04143 | Sulf_transp | Sulphur transport | 2.0E-25 | 27 | 319 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Transmembrane domain | 0.075 | 0.2874 | 0.1635 | 0.2638 | 0.1759 | 0.2035 | 0.2834 | 0.1031 | 0.1226 | 0.0011 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 39 | 56 | 17 |
| 3 | 81 | 103 | 22 |
| 4 | 107 | 129 | 22 |
| 5 | 158 | 180 | 22 |
| 6 | 185 | 204 | 19 |
| 7 | 242 | 264 | 22 |
| 8 | 274 | 296 | 22 |
| 9 | 303 | 325 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 4862 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02846 MAASAAVSGAVFGAAMATAGFHDGSLIVAQMKLQSWHMLQAFMVATASSAIIYCLVERRLHLVIPPRPASSLGIF ASHDGNVIGGALLGVGIVLSGSCPGALFAQLAAGGRTACFTLAGAVAGAVIWAGKAGELVRRRQQKSDPGLGMQG PHLSRAKGLLLLETTCLAVLALSVSLAPSIPGGRVNGAVAGLVIGIAQLVSLLARRSMLGACGPYREAGALLRRL ICGSRLDTKPGDDGSKMAFGLGAVAGAWLLLRAAPSLVADAVFEAPPLFATVGGFLMVVGAALAGGCTSGHGISG ISLLSASSIVTMASVFAAGTTVAALTY* |
| Coding | >Ophcf2|02846 ATGGCCGCTTCCGCCGCCGTCTCGGGCGCCGTCTTCGGAGCCGCCATGGCCACTGCCGGCTTTCACGACGGCTCC CTCATCGTGGCTCAGATGAAGCTCCAGAGCTGGCATATGCTTCAAGCCTTTATGGTTGCCACGGCAAGCAGCGCT ATCATATACTGTCTTGTCGAGAGGCGACTTCACCTTGTCATACCGCCGCGTCCCGCCTCTTCTCTGGGAATCTTT GCCAGCCACGACGGAAACGTCATCGGCGGCGCCCTGCTTGGGGTTGGAATTGTCCTCTCCGGCTCCTGTCCAGGC GCCTTATTCGCTCAGCTTGCGGCCGGGGGTCGGACTGCCTGCTTCACTCTGGCAGGTGCCGTCGCCGGCGCCGTC ATATGGGCCGGTAAAGCCGGCGAGCTGGTCCGCCGTCGGCAGCAGAAATCGGACCCGGGGCTTGGCATGCAGGGG CCACACCTTTCGAGGGCCAAGGGGCTGCTTCTTCTCGAGACAACCTGCCTGGCCGTCTTGGCCCTGTCGGTCAGC CTGGCGCCGTCTATCCCAGGCGGCCGAGTGAATGGAGCCGTGGCCGGTCTAGTCATCGGCATCGCACAGCTCGTT TCGCTCCTGGCGCGACGGTCCATGCTGGGTGCATGCGGCCCGTACCGAGAAGCTGGCGCTTTGCTGCGGCGCCTG ATTTGCGGCTCGAGGCTCGACACAAAGCCGGGTGATGATGGCTCAAAGATGGCCTTTGGCCTGGGCGCCGTTGCC GGTGCCTGGCTGCTCCTGCGAGCAGCTCCGTCTCTGGTCGCCGACGCCGTCTTCGAGGCCCCGCCCCTGTTTGCC ACCGTCGGCGGCTTTCTCATGGTCGTCGGAGCAGCTCTGGCGGGCGGGTGCACGTCCGGACATGGCATCAGCGGC ATCTCACTGCTCTCGGCGTCTAGCATCGTGACCATGGCCAGTGTCTTTGCTGCGGGCACAACAGTGGCGGCGCTG ACGTACTAG |
| Transcript | >Ophcf2|02846 ATGGCCGCTTCCGCCGCCGTCTCGGGCGCCGTCTTCGGAGCCGCCATGGCCACTGCCGGCTTTCACGACGGCTCC CTCATCGTGGCTCAGATGAAGCTCCAGAGCTGGCATATGCTTCAAGCCTTTATGGTTGCCACGGCAAGCAGCGCT ATCATATACTGTCTTGTCGAGAGGCGACTTCACCTTGTCATACCGCCGCGTCCCGCCTCTTCTCTGGGAATCTTT GCCAGCCACGACGGAAACGTCATCGGCGGCGCCCTGCTTGGGGTTGGAATTGTCCTCTCCGGCTCCTGTCCAGGC GCCTTATTCGCTCAGCTTGCGGCCGGGGGTCGGACTGCCTGCTTCACTCTGGCAGGTGCCGTCGCCGGCGCCGTC ATATGGGCCGGTAAAGCCGGCGAGCTGGTCCGCCGTCGGCAGCAGAAATCGGACCCGGGGCTTGGCATGCAGGGG CCACACCTTTCGAGGGCCAAGGGGCTGCTTCTTCTCGAGACAACCTGCCTGGCCGTCTTGGCCCTGTCGGTCAGC CTGGCGCCGTCTATCCCAGGCGGCCGAGTGAATGGAGCCGTGGCCGGTCTAGTCATCGGCATCGCACAGCTCGTT TCGCTCCTGGCGCGACGGTCCATGCTGGGTGCATGCGGCCCGTACCGAGAAGCTGGCGCTTTGCTGCGGCGCCTG ATTTGCGGCTCGAGGCTCGACACAAAGCCGGGTGATGATGGCTCAAAGATGGCCTTTGGCCTGGGCGCCGTTGCC GGTGCCTGGCTGCTCCTGCGAGCAGCTCCGTCTCTGGTCGCCGACGCCGTCTTCGAGGCCCCGCCCCTGTTTGCC ACCGTCGGCGGCTTTCTCATGGTCGTCGGAGCAGCTCTGGCGGGCGGGTGCACGTCCGGACATGGCATCAGCGGC ATCTCACTGCTCTCGGCGTCTAGCATCGTGACCATGGCCAGTGTCTTTGCTGCGGGCACAACAGTGGCGGCGCTG ACGTACTAG |
| Gene | >Ophcf2|02846 ATGGCCGCTTCCGCCGCCGTCTCGGGCGCCGTCTTCGGAGCCGCCATGGCCACTGCCGGCTTTCACGACGGCTCC CTCATCGTGGCTCAGATGAAGCTCCAGAGCTGGCATATGCTTCAAGCCTTTATGGTTGCCACGGCAAGCAGCGCG TGAGGCTTCCCCAAGGAAACCGTACCTCCTAAAGAGTCTTGGTAACCTTCGTTGCAGTATCATATACTGTCTTGT CGAGAGGCGACTTCACCTTGTCATACCGCCGCGTCCCGCCTCTTCTCTGGGAATCTTTGCCAGCCACGACGGAAA CGTCATCGGCGGCGCCCTGCTTGGGGTTGGAATTGTCCTCTCCGGCTCCTGTCCAGGCGCCTTATTCGCTCAGCT TGCGGCCGGGGGTCGGACTGCCTGCTTCACTCTGGCAGGTGCCGTCGCCGGCGCCGTCATATGGGCCGGTAAAGC CGGCGAGCTGGTCCGCCGTCGGCAGCAGAAATCGGACCCGGGGCTTGGCATGCAGGGGCCACACCTTTCGAGGGC CAAGGGGCTGCTTCTTCTCGAGACAACCTGCCTGGCCGTCTTGGCCCTGTCGGTCAGCCTGGCGCCGTCTATCCC AGGCGGCCGAGTGAATGGAGCCGTGGCCGGTCTAGTCATCGGCATCGCACAGCTCGTTTCGCTCCTGGCGCGACG GTCCATGCTGGGTGCATGCGGCCCGTACCGAGAAGCTGGCGCTTTGCTGCGGCGCCTGATTTGCGGCTCGAGGCT CGACACAAAGCCGGGTGATGATGGCTCAAAGATGGCCTTTGGCCTGGGCGCCGTTGCCGGTGCCTGGCTGCTCCT GCGAGCAGCTCCGTCTCTGGTCGCCGACGCCGTCTTCGAGGCCCCGCCCCTGTTTGCCACCGTCGGCGGCTTTCT CATGGTCGTCGGAGCAGCTCTGGCGGGCGGGTGCACGTCCGGACATGGCATCAGCGGCATCTCACTGCTCTCGGC GTCTAGCATCGTGACCATGGCCAGTGTCTTTGCTGCGGGCACAACAGTGGCGGCGCTGACGTACTAG |