© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02816 |
| Gene name | |
| Location | scaffold_02:4855435..4857158 |
| Strand | - |
| Gene length (bp) | 1723 |
| Transcript length (bp) | 1407 |
| Coding sequence length (bp) | 1407 |
| Protein length (aa) | 469 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00002 | 7tm_2 | 7 transmembrane receptor (Secretin family) | 9.3E-06 | 24 | 195 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0004930 | G protein-coupled receptor activity | Yes |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0060089 | molecular transducer activity | No |
| GO:0038023 | signaling receptor activity | No |
| GO:0007165 | signal transduction | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0050789 | regulation of biological process | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0065007 | biological regulation | No |
| GO:0004888 | transmembrane signaling receptor activity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Transmembrane domain | 0.0698 | 0.0681 | 0.0478 | 0.8942 | 0.1342 | 0.0048 | 0.122 | 0.26 | 0.1117 | 0.0253 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 30 | 52 | 22 |
| 2 | 59 | 81 | 22 |
| 3 | 105 | 124 | 19 |
| 4 | 131 | 153 | 22 |
| 5 | 180 | 202 | 22 |
| 6 | 331 | 353 | 22 |
| 7 | 363 | 385 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 164 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02816 MAFLTPSRSAIETEHLTSRQVDVLVALERAGGSISLVALVFIFIAYALFRPVRNIQNTFIVFASVSNVGASVASI IALDGIKAGTETPLCQTQSFLFEMFMQSDPWWSLAMSVNVFLVFYCRTSPDSFRTWWWIYCLICYGGPFAIALTL LLIKNKERGPVYGQATIWCWVDTKWDSIRIFTYYMLIWVCIIGSFVCYSLVGYHVFRSRNRLRSFPASKNREAGQ YERTMQQREANGGTRTTEVNSSHLSASVRGNTTLVEPKQVHVRSAGQASSFDNVPKSPGRPTAASGAPGHGSFMS PLGEGVKIGKRFASKFVVDDPVKRAYLRTSLLFALSVLVTWIPSSLNRIHGWLVGASPFEFHVATAAVLPLQGVW NCFIFFVTSWKVVKQCLRRLPSDSSRSARGESMGTVDRTVGRRHRDHLRSETDFDDDDDDDDDDDDDDESGNMGS DVELRHVSDDGGKETSSV* |
| Coding | >Ophcf2|02816 ATGGCCTTCCTCACGCCCTCGAGATCCGCGATAGAGACCGAACACCTGACATCGAGGCAAGTGGACGTGCTGGTT GCCCTCGAACGAGCCGGAGGTTCCATCAGTCTCGTCGCTCTCGTCTTCATCTTCATCGCCTACGCTCTGTTCCGG CCGGTGCGCAATATTCAAAACACCTTCATCGTCTTCGCCAGCGTTTCCAATGTTGGGGCCAGTGTTGCGAGCATC ATTGCGCTGGATGGTATCAAGGCTGGAACGGAGACGCCGCTGTGTCAGACGCAGAGCTTTCTGTTTGAGATGTTC ATGCAATCCGATCCCTGGTGGTCCCTCGCCATGTCCGTCAACGTCTTCCTCGTCTTCTATTGCCGCACCTCTCCC GACTCGTTCCGAACATGGTGGTGGATCTACTGCCTCATCTGCTACGGCGGCCCATTCGCCATCGCCCTGACACTC CTCCTCATCAAGAACAAGGAGCGCGGTCCCGTCTACGGTCAAGCCACGATCTGGTGCTGGGTCGACACCAAGTGG GACAGCATTCGCATCTTTACCTACTACATGCTCATCTGGGTATGCATCATCGGCTCCTTCGTCTGCTACAGTCTG GTAGGATATCACGTCTTCCGCTCCCGGAATCGCCTCCGCAGCTTTCCGGCCTCCAAGAACAGAGAGGCAGGCCAG TATGAGAGGACGATGCAGCAACGTGAAGCCAATGGCGGTACGAGAACTACAGAGGTCAATAGCAGCCACTTGTCG GCCTCCGTCAGGGGCAACACTACGCTCGTCGAGCCCAAGCAAGTCCACGTCAGATCTGCAGGACAGGCTTCATCC TTTGACAACGTCCCGAAATCCCCCGGGAGACCTACAGCGGCGTCAGGCGCTCCTGGTCACGGCAGCTTCATGTCC CCTCTGGGAGAGGGCGTCAAGATTGGCAAGCGGTTCGCGTCCAAGTTCGTCGTCGACGATCCCGTCAAGCGAGCC TACCTACGGACGAGCCTCCTCTTTGCTCTCAGTGTTCTCGTTACTTGGATCCCTAGTAGTCTGAACCGGATCCAC GGCTGGCTGGTGGGCGCGTCGCCCTTTGAGTTCCACGTCGCTACAGCCGCTGTTCTGCCTCTTCAGGGGGTCTGG AACTGCTTCATCTTCTTCGTCACGAGCTGGAAGGTCGTCAAGCAGTGTCTCCGCCGTCTACCGTCTGATTCGTCC CGTTCAGCTAGGGGCGAGTCCATGGGCACCGTCGATCGTACCGTCGGCCGCCGTCATCGGGATCATCTCCGGTCC GAGACGGATTTCGACGACGACGACGACGACGACGACGACGACGACGACGACGACGAGTCGGGGAATATGGGGAGC GATGTCGAGCTCAGACACGTGTCTGATGACGGAGGCAAAGAGACGTCTAGTGTATGA |
| Transcript | >Ophcf2|02816 ATGGCCTTCCTCACGCCCTCGAGATCCGCGATAGAGACCGAACACCTGACATCGAGGCAAGTGGACGTGCTGGTT GCCCTCGAACGAGCCGGAGGTTCCATCAGTCTCGTCGCTCTCGTCTTCATCTTCATCGCCTACGCTCTGTTCCGG CCGGTGCGCAATATTCAAAACACCTTCATCGTCTTCGCCAGCGTTTCCAATGTTGGGGCCAGTGTTGCGAGCATC ATTGCGCTGGATGGTATCAAGGCTGGAACGGAGACGCCGCTGTGTCAGACGCAGAGCTTTCTGTTTGAGATGTTC ATGCAATCCGATCCCTGGTGGTCCCTCGCCATGTCCGTCAACGTCTTCCTCGTCTTCTATTGCCGCACCTCTCCC GACTCGTTCCGAACATGGTGGTGGATCTACTGCCTCATCTGCTACGGCGGCCCATTCGCCATCGCCCTGACACTC CTCCTCATCAAGAACAAGGAGCGCGGTCCCGTCTACGGTCAAGCCACGATCTGGTGCTGGGTCGACACCAAGTGG GACAGCATTCGCATCTTTACCTACTACATGCTCATCTGGGTATGCATCATCGGCTCCTTCGTCTGCTACAGTCTG GTAGGATATCACGTCTTCCGCTCCCGGAATCGCCTCCGCAGCTTTCCGGCCTCCAAGAACAGAGAGGCAGGCCAG TATGAGAGGACGATGCAGCAACGTGAAGCCAATGGCGGTACGAGAACTACAGAGGTCAATAGCAGCCACTTGTCG GCCTCCGTCAGGGGCAACACTACGCTCGTCGAGCCCAAGCAAGTCCACGTCAGATCTGCAGGACAGGCTTCATCC TTTGACAACGTCCCGAAATCCCCCGGGAGACCTACAGCGGCGTCAGGCGCTCCTGGTCACGGCAGCTTCATGTCC CCTCTGGGAGAGGGCGTCAAGATTGGCAAGCGGTTCGCGTCCAAGTTCGTCGTCGACGATCCCGTCAAGCGAGCC TACCTACGGACGAGCCTCCTCTTTGCTCTCAGTGTTCTCGTTACTTGGATCCCTAGTAGTCTGAACCGGATCCAC GGCTGGCTGGTGGGCGCGTCGCCCTTTGAGTTCCACGTCGCTACAGCCGCTGTTCTGCCTCTTCAGGGGGTCTGG AACTGCTTCATCTTCTTCGTCACGAGCTGGAAGGTCGTCAAGCAGTGTCTCCGCCGTCTACCGTCTGATTCGTCC CGTTCAGCTAGGGGCGAGTCCATGGGCACCGTCGATCGTACCGTCGGCCGCCGTCATCGGGATCATCTCCGGTCC GAGACGGATTTCGACGACGACGACGACGACGACGACGACGACGACGACGACGACGAGTCGGGGAATATGGGGAGC GATGTCGAGCTCAGACACGTGTCTGATGACGGAGGCAAAGAGACGTCTAGTGTATGA |
| Gene | >Ophcf2|02816 ATGGCCTTCCTCACGCCCTCGAGATCCGCGATAGAGACCGAACACCTGACATCGAGGCAAGTGGACGTGCTGGTT GCCCTCGAACGAGCCGGAGGTTCCATCAGTCTCGTCGCTCTCGTCTTCATCTTCATCGCCTACGCTCTGTTCCGG CCGGTGCGCAATATTCAAAACACCTTCATCGTCTTCGCCAGCGTTTCCAATGTTGGGGCCAGTGTTGCGAGCATC ATTGCGCTGGATGGTATCAAGGCTGGAACGGAGACGCCGCTGTGTCAGACGCAGAGCTTTCTGTTTGAGATGTTG GTGACCTTTTTCTTGATGTCGCTGCATCATCATCTTCTCTCTCTCTCTTCTTGTTGTATCTCAGGGGCTTTAAAC CACCATGATACTCGTTCCCAATCATCTTGTCTCTCTTCTTGTTGTATCTCAGGGGCCTCAAACCACCATGATACT CGCCCCCACGAACCGCTGACTCTTCCAGGTTCATGCAATCCGATCCCTGGTGGTCCCTCGCCATGTCCGTCAACG TCTTCCTCGTCTTCTATTGCCGCACCTCTCCCGACTCGTTCCGAACATGGTGGTGGATCTACTGCCTCATCTGCT ACGGCGGCCCATTCGCCATCGCCCTGACACTCCTCCTCATCAAGAACAAGGAGCGCGGTCCCGTCTACGGTCAAG CCACGGTATGCTTCCGACAGCGTCATGACAGCAATCTCAGCTGACGAGCGGCAGATCTGGTGCTGGGTCGACACC AAGTGGGACAGCATTCGCATCTTTACCTACTACATGCTCATCTGGGTATGCATCATCGGCTCCTTCGTCTGCTAC AGTCTGGTAGGATATCACGTCTTCCGCTCCCGGAATCGCCTCCGCAGCTTTCCGGCCTCCAAGAACAGAGAGGCA GGCCAGTATGAGAGGGTATGTAGACCTTGCCTGGCCTTGTAGAGAGCCAGAGATCTGTTGAACCGGCAAAGCTGA CCATTTATACTTGGTATACCCAAAGACGATGCAGCAACGTGAAGCCAATGGCGGTACGAGAACTACAGAGGTCAA TAGCAGCCACTTGTCGGCCTCCGTCAGGGGCAACACTACGCTCGTCGAGCCCAAGCAAGTCCACGTCAGATCTGC AGGACAGGCTTCATCCTTTGACAACGTCCCGAAATCCCCCGGGAGACCTACAGCGGCGTCAGGCGCTCCTGGTCA CGGCAGCTTCATGTCCCCTCTGGGAGAGGGCGTCAAGATTGGCAAGCGGTTCGCGTCCAAGTTCGTCGTCGACGA TCCCGTCAAGCGAGCCTACCTACGGACGAGCCTCCTCTTTGCTCTCAGTGTTCTCGTTACTTGGATCCCTAGTAG TCTGAACCGGATCCACGGCTGGCTGGTGGGCGCGTCGCCCTTTGAGTTCCACGTCGCTACAGCCGCTGTTCTGCC TCTTCAGGGGGTCTGGAACTGCTTCATCTTCTTCGTCACGAGCTGGAAGGTCGTCAAGCAGTGTCTCCGCCGTCT ACCGTCTGATTCGTCCCGTTCAGCTAGGGGCGAGTCCATGGGCACCGTCGATCGTACCGTCGGCCGCCGTCATCG GGATCATCTCCGGTCCGAGACGGATTTCGACGACGACGACGACGACGACGACGACGACGACGACGACGACGAGTC GGGGAATATGGGGAGCGATGTCGAGCTCAGACACGTGTCTGATGACGGAGGCAAAGAGACGTCTAGTGTATGA |