© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02790 |
| Gene name | |
| Location | scaffold_02:4773446..4775706 |
| Strand | + |
| Gene length (bp) | 2260 |
| Transcript length (bp) | 2079 |
| Coding sequence length (bp) | 2079 |
| Protein length (aa) | 693 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00667 | FAD_binding_1 | FAD binding domain | 2.4E-60 | 269 | 488 |
| PF00258 | Flavodoxin_1 | Flavodoxin | 5.0E-34 | 67 | 212 |
| PF00175 | NAD_binding_1 | Oxidoreductase NAD-binding domain | 4.5E-19 | 544 | 654 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0010181 | FMN binding | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0000166 | nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003824 | catalytic activity | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0043167 | ion binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0036094 | small molecule binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 9 | 31 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 127.70 | 67.76 | 187.65 |
| Alive | In ants, during behavior modification | 308.56 | 141.28 | 475.84 |
| Dead | In ants, recently dead | 146.43 | 73.48 | 219.37 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.000238 | yes |
| Dead | Fungus | 0.562399 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02790 MAALDTLDVVVLVALLVGTVAYFTKGTYWGVVKDPYANAFANANGSVPGRTRNIVEKMEESGKNCVVFYGSQTGT AEDYASRLAKEGKSRFGLETMVADLEEYDFDNLDTFPSDKVCMFVLATYGEGEPTDNAVDFYEFISAEDVSLSES NDPPLGNLNYVAFGLGNNTYEHYNSMVRNVDKALAKLGAHRVGDAGEGDDGAGTMEEDFLAWKDPMWAALASKLG LEEREAIYEPTFELIYRSELTPESSQVYLGELNKMHLEGSAKGPFNAHNPYIAPIVASRELFSAKDRNCIHMDID VSSSNLTYQTGDHIAVWPTNPGDEVDRFLDVVGLGDSRHKVVSVKALEPTAKVPFPTPTTFDAIVRYHLEICAPV SRQFLFTLAPFSPNDDIRIEMTRLGSDKDYFHQKTGPNYYNIARLLAAVGKGERWTKIPFSAFIEGLNKLQPRYY SISSSSLVSPKVISITAVVESQAIPGRDGPFRGVATNYLLALKQRQNGDPNPEPFGQSYEINGPRNRYDGIHVPV HVRHSNFKLPSDPSKPIIMIGPGTGVAPFRGFVQERAKQAQNGVPVGRTLLFFGCRKRAEDFMYEQEWEECKKML GDNFEMITAFSRDGNKKVYVQHRLKERARDVNDLLSQKAYFYVCGDAANMAREVNTVLAQIIAEARGVSEQKGEE VVKHMRAANQYQEDVWS* |
| Coding | >Ophcf2|02790 ATGGCTGCCCTCGACACGCTCGATGTCGTCGTCCTCGTCGCTCTTCTCGTCGGCACCGTCGCCTACTTCACAAAG GGTACCTACTGGGGCGTCGTCAAGGACCCCTACGCCAATGCCTTTGCCAACGCCAATGGCTCCGTTCCGGGCCGC ACCCGCAACATCGTCGAAAAGATGGAGGAGTCTGGCAAGAACTGCGTCGTATTCTACGGCTCGCAGACCGGAACC GCCGAGGACTACGCCTCACGACTCGCAAAGGAGGGCAAAAGCCGCTTTGGTCTCGAGACAATGGTCGCCGACCTC GAAGAGTATGACTTTGACAACCTAGACACTTTCCCGTCCGACAAGGTCTGCATGTTCGTCCTGGCTACATACGGC GAAGGCGAGCCGACAGACAACGCCGTCGACTTTTACGAATTCATCTCGGCCGAAGACGTGTCTCTGTCGGAGAGC AACGACCCGCCTCTTGGTAACCTCAACTACGTCGCATTCGGACTCGGCAACAATACGTACGAGCACTACAACTCC ATGGTCCGCAACGTCGACAAGGCCCTTGCGAAGCTCGGCGCCCACCGAGTCGGCGATGCCGGTGAGGGCGACGAC GGTGCCGGCACAATGGAGGAGGACTTCTTGGCCTGGAAGGATCCCATGTGGGCTGCTCTGGCCAGCAAGTTGGGT CTGGAGGAGCGCGAGGCCATCTACGAGCCAACGTTTGAGCTCATCTACCGTTCCGAGCTGACGCCCGAAAGCAGC CAGGTCTATCTGGGCGAGCTTAACAAGATGCACCTCGAGGGCTCGGCCAAGGGTCCCTTCAACGCGCATAACCCC TACATCGCCCCCATCGTCGCCTCCCGCGAGCTCTTCTCAGCAAAGGACCGCAACTGCATCCATATGGACATCGAC GTCAGCAGTTCCAACTTGACGTATCAGACTGGCGACCACATCGCCGTCTGGCCGACCAACCCAGGTGACGAGGTC GACCGCTTTCTCGACGTCGTCGGCCTTGGCGACTCGCGGCACAAGGTCGTCAGCGTCAAGGCGCTGGAGCCGACG GCCAAGGTTCCTTTCCCCACGCCTACGACGTTCGACGCCATCGTCCGCTACCACCTCGAGATCTGCGCGCCCGTC TCGCGCCAGTTCCTCTTCACGCTCGCCCCTTTCTCTCCCAACGACGATATCCGGATCGAGATGACGAGACTCGGC AGCGACAAGGATTACTTCCATCAGAAGACGGGACCCAACTACTACAACATCGCCCGCCTCCTGGCCGCTGTCGGT AAGGGCGAGCGCTGGACCAAGATCCCCTTCTCGGCCTTCATCGAGGGCCTCAACAAGCTTCAGCCGCGGTACTAC TCCATCTCGTCCTCGTCACTCGTCTCGCCCAAGGTCATCTCCATCACGGCCGTCGTCGAGTCGCAAGCGATTCCC GGCCGCGACGGACCTTTCCGCGGCGTCGCGACAAACTACCTACTCGCGCTCAAGCAGCGCCAGAACGGAGACCCG AACCCGGAACCATTCGGGCAGTCGTACGAGATCAACGGCCCGCGCAACCGGTACGACGGCATTCACGTGCCCGTT CACGTGCGCCACTCCAACTTCAAGCTACCCTCGGACCCGAGCAAGCCCATCATCATGATCGGTCCGGGCACCGGC GTCGCCCCCTTCCGCGGCTTCGTCCAGGAACGCGCCAAGCAAGCCCAGAACGGCGTTCCCGTCGGCCGAACCCTG CTCTTCTTTGGCTGCCGAAAGCGTGCCGAGGATTTCATGTATGAGCAGGAGTGGGAGGAATGTAAAAAGATGCTC GGCGACAACTTTGAGATGATCACGGCCTTTTCTCGCGACGGCAACAAGAAGGTCTACGTCCAACATCGTCTCAAG GAACGCGCCCGTGACGTCAACGACCTCCTTTCCCAAAAGGCTTACTTCTACGTCTGCGGCGACGCGGCGAACATG GCGCGCGAGGTCAACACCGTCCTGGCTCAGATCATTGCCGAGGCCCGCGGCGTATCGGAGCAAAAGGGCGAGGAG GTTGTCAAGCACATGAGGGCCGCGAATCAATATCAGGAAGACGTCTGGTCATGA |
| Transcript | >Ophcf2|02790 ATGGCTGCCCTCGACACGCTCGATGTCGTCGTCCTCGTCGCTCTTCTCGTCGGCACCGTCGCCTACTTCACAAAG GGTACCTACTGGGGCGTCGTCAAGGACCCCTACGCCAATGCCTTTGCCAACGCCAATGGCTCCGTTCCGGGCCGC ACCCGCAACATCGTCGAAAAGATGGAGGAGTCTGGCAAGAACTGCGTCGTATTCTACGGCTCGCAGACCGGAACC GCCGAGGACTACGCCTCACGACTCGCAAAGGAGGGCAAAAGCCGCTTTGGTCTCGAGACAATGGTCGCCGACCTC GAAGAGTATGACTTTGACAACCTAGACACTTTCCCGTCCGACAAGGTCTGCATGTTCGTCCTGGCTACATACGGC GAAGGCGAGCCGACAGACAACGCCGTCGACTTTTACGAATTCATCTCGGCCGAAGACGTGTCTCTGTCGGAGAGC AACGACCCGCCTCTTGGTAACCTCAACTACGTCGCATTCGGACTCGGCAACAATACGTACGAGCACTACAACTCC ATGGTCCGCAACGTCGACAAGGCCCTTGCGAAGCTCGGCGCCCACCGAGTCGGCGATGCCGGTGAGGGCGACGAC GGTGCCGGCACAATGGAGGAGGACTTCTTGGCCTGGAAGGATCCCATGTGGGCTGCTCTGGCCAGCAAGTTGGGT CTGGAGGAGCGCGAGGCCATCTACGAGCCAACGTTTGAGCTCATCTACCGTTCCGAGCTGACGCCCGAAAGCAGC CAGGTCTATCTGGGCGAGCTTAACAAGATGCACCTCGAGGGCTCGGCCAAGGGTCCCTTCAACGCGCATAACCCC TACATCGCCCCCATCGTCGCCTCCCGCGAGCTCTTCTCAGCAAAGGACCGCAACTGCATCCATATGGACATCGAC GTCAGCAGTTCCAACTTGACGTATCAGACTGGCGACCACATCGCCGTCTGGCCGACCAACCCAGGTGACGAGGTC GACCGCTTTCTCGACGTCGTCGGCCTTGGCGACTCGCGGCACAAGGTCGTCAGCGTCAAGGCGCTGGAGCCGACG GCCAAGGTTCCTTTCCCCACGCCTACGACGTTCGACGCCATCGTCCGCTACCACCTCGAGATCTGCGCGCCCGTC TCGCGCCAGTTCCTCTTCACGCTCGCCCCTTTCTCTCCCAACGACGATATCCGGATCGAGATGACGAGACTCGGC AGCGACAAGGATTACTTCCATCAGAAGACGGGACCCAACTACTACAACATCGCCCGCCTCCTGGCCGCTGTCGGT AAGGGCGAGCGCTGGACCAAGATCCCCTTCTCGGCCTTCATCGAGGGCCTCAACAAGCTTCAGCCGCGGTACTAC TCCATCTCGTCCTCGTCACTCGTCTCGCCCAAGGTCATCTCCATCACGGCCGTCGTCGAGTCGCAAGCGATTCCC GGCCGCGACGGACCTTTCCGCGGCGTCGCGACAAACTACCTACTCGCGCTCAAGCAGCGCCAGAACGGAGACCCG AACCCGGAACCATTCGGGCAGTCGTACGAGATCAACGGCCCGCGCAACCGGTACGACGGCATTCACGTGCCCGTT CACGTGCGCCACTCCAACTTCAAGCTACCCTCGGACCCGAGCAAGCCCATCATCATGATCGGTCCGGGCACCGGC GTCGCCCCCTTCCGCGGCTTCGTCCAGGAACGCGCCAAGCAAGCCCAGAACGGCGTTCCCGTCGGCCGAACCCTG CTCTTCTTTGGCTGCCGAAAGCGTGCCGAGGATTTCATGTATGAGCAGGAGTGGGAGGAATGTAAAAAGATGCTC GGCGACAACTTTGAGATGATCACGGCCTTTTCTCGCGACGGCAACAAGAAGGTCTACGTCCAACATCGTCTCAAG GAACGCGCCCGTGACGTCAACGACCTCCTTTCCCAAAAGGCTTACTTCTACGTCTGCGGCGACGCGGCGAACATG GCGCGCGAGGTCAACACCGTCCTGGCTCAGATCATTGCCGAGGCCCGCGGCGTATCGGAGCAAAAGGGCGAGGAG GTTGTCAAGCACATGAGGGCCGCGAATCAATATCAGGAAGACGTCTGGTCATGA |
| Gene | >Ophcf2|02790 ATGGCTGCCCTCGACACGCTCGATGTCGTCGTCCTCGTCGCTCTTCTCGTCGGCACCGTCGCCTACTTCACAAAG GGTACCTACTGGGGCGTCGTCAAGGACCCCTACGCCAATGCCTTTGCCAACGCCAATGGCTCCGTTCCGGGCCGC ACCCGCAACATCGTCGAAAAGATGGAGGAGTCTGGCAAGAACTGCGTCGTATTCTACGGCTCGCAGACCGGAACC GCCGAGGACTACGCCTCACGACTCGCAAAGGAGGGCAAAAGCCGCTTTGGTCTCGAGACAATGGTCGCCGACCTC GAAGAGTATGACTTTGACAACCTAGACACTTTCCCGTCCGACAAGGTCTGCATGTTCGTCCTGGCTACATACGGC GAAGGCGAGCCGACAGACAACGCCGTCGACTTTTACGAATTCATCTCGGCCGAAGACGTGTCTCTGTCGGAGAGC AACGACCCGCCTCTTGGTAACCTCAACTACGTCGCATTCGGACTCGGCAACAATACGTACGAGCACTACAACTCC ATGGTCCGCAACGTCGACAAGGCCCTTGCGAAGCTCGGCGCCCACCGAGTCGGCGATGCCGGTGAGGGCGACGAC GGTGCCGGCACAATGGAGGAGGACTTCTTGGCCTGGAAGGATCCCATGTGGGCTGCTCTGGCCAGCAAGTTGGGT CTGGAGGAGCGCGAGGCCATCTACGAGCCAACGTTTGAGCTCATCTACCGTTCCGAGCTGACGCCCGAAAGCAGC CAGGTCTATCTGGGCGAGCTTAACAAGATGCACCTCGAGGGCTCGGCCAAGGGTCCCTTCAACGCGCATAACCCC TACATCGCCCCCATCGTCGCCTCCCGCGAGCTCTTCTCAGCAAAGGACCGCAACTGCATCCATATGGACATCGAC GTCAGCAGTTCCAACTTGACGTATCAGACTGGCGACCACATCGCCGTCTGGCCGACCAACCCAGGTGACGAGGTC GACCGCTTTCTCGACGTCGTCGGCCTTGGCGACTCGCGGCACAAGGTCGTCAGCGTCAAGGCGCTGGAGCCGACG GCCAAGGTTCCTTTCCCCACGCCTACGACGTTCGACGCCATCGTCCGCTACCACCTCGAGATCTGCGCGCCCGTC TCGCGCCAGTTCCTCTTCACGCTCGCCCCTTTCTCTCCCAACGACGATATCCGGATCGAGATGACGAGACTCGGC AGCGACAAGGATTACTTCCATCAGAAGACGGGACCCAACTACTACAACATCGCCCGCCTCCTGGCCGCTGTCGGT AAGGGCGAGCGCTGGACCAAGATCCCCTTCTCGGCCTTCATCGAGGGCCTCAACAAGCTTCAGCCGCGGTACTAC TCCATCTCGTCCTCGTCACTCGTCTCGCCCAAGGTCATCTCCATCACGGCCGTCGTCGAGTCGCAAGCGATTCCC GGCCGCGACGGACCTTTCCGCGGCGTCGCGACAAACTACCTACTCGCGCTCAAGCAGCGCCAGAACGGAGACCCG AACCCGGAACCATTCGGGCAGTCGTACGAGATCAACGGCCCGCGCAACCGGTACGACGGCATTCACGTGCCCGTT CACGTGCGCCACTCCAACTTCAAGCTACCCTCGGACCCGAGCAAGCCCATCATCATGATCGGTCCGGGCACCGGC GTCGCCCCCTTCCGCGGCTTCGTCCAGGAACGCGCCAAGCAAGCCCAGAACGGCGTTCCCGTCGGCCGAACCCTG CTCTTCTTTGGCTGCCGAAAGCGTGCCGAGGATTTCATGTATGAGCAGGAGTGGGAGGTATGTGATCTCCCACCC CGGTCCACCGCCTCCTTTTACATACGGATTCCCTTGTTCCCTGACGTTCCCCGCTGCAGGAATGTAAAAAGATGC TCGGCGACAACTTTGAGATGATCACGGCCTTTTCTCGCGACGGCAACAAGAAGGTCTACGTCCAACATCGTCTCA AGGAACGCGCCCGTGACGTCAACGACCTCCTTTCCCAAAAGGCTTACTTCTACGTCTGCGGCGACGCGGCGAACA TGGCGCGCGAGGTCAACACCGTCCTGGCTCAGATCATTGCCGAGGCCCGCGGCGTATCGGAGCAAAAGGGCGAGG AGGTTGTCAAGCACATGAGGGCCGCGAATCAATATCAGGTGCGTCTTCACGTCCTCTTGTCTTCTTTTCTTTTCC CAGTTTCTTCCTATAGCAACACTTACTTACGACCTCTACCATCTTCTCTCTTCCTCCCCGACTACAGGAAGACGT CTGGTCATGA |