Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|02782
Gene name
Location	scaffold_02:4748332..4749463
Strand	-
Gene length (bp)	1131
Transcript length (bp)	1131
Coding sequence length (bp)	1131
Protein length (aa)	377

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF20246	DUF6601	Family of unknown function (DUF6601)	1.2E-72	95	332

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 23	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	286	308	22
2	328	350	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	0.37	0.0	0.85
Alive	In ants, during behavior modification	1.14	0.0	2.60
Dead	In ants, recently dead	0.76	0.0	1.64

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.049023	yes
Alive	Dead	0.382300	no
Dead	Fungus	0.211543	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|02782 MSPPLPRWQADSGASNSRPFYAEPPFNRDVAPVVNGRFRYDSSDCSEGSMTSGASQFCSPPLDAINFSSYKDLTP TLYLAGGQKGARAYRIDSIEEYLAASFDLERLHLIQNRLWLAGLPVPARSLHRQKILGREIVITDQSDLHLTWRE STLFLKPLWEPLLDHGFWRYELCNKDVKTYLSATGLLMSYIWLICSEPDLLIAKQHNLVPRKLNWAAWAFFSRDF LDRHSLDGHNEDMAKRYDYGELRIQRLNLIYRFAPETFPNYLLRGYLYGYNQFSQFFGRNFAWAAVAVLYAGVVL AAMQVALAVPPIKDDVSFQRAAYGFTVFILVAMVFFSTFALAYLVIVFNLNLIFTRQKVRQHEQRAKEATRSNNA P*
Coding	>Ophcf2\|02782 ATGTCACCTCCCCTTCCGAGATGGCAGGCCGACTCGGGAGCCAGCAATTCGAGACCGTTTTACGCCGAGCCCCCC TTCAACAGAGACGTGGCGCCCGTCGTCAACGGAAGATTTCGATATGATTCCAGTGATTGCAGTGAAGGCTCGATG ACCTCTGGTGCGAGCCAATTCTGCTCGCCGCCTTTGGATGCCATTAATTTCTCGTCTTACAAGGACTTGACGCCG ACTCTCTACCTTGCAGGCGGTCAAAAGGGAGCAAGAGCCTATCGCATCGACTCCATCGAGGAATATCTCGCTGCC TCTTTCGACCTGGAACGGCTCCATCTCATTCAAAACCGTCTATGGCTGGCCGGACTCCCCGTTCCCGCACGGTCG TTGCATAGACAAAAGATACTCGGTCGCGAGATTGTCATCACGGATCAGTCAGACCTGCATCTCACCTGGCGTGAG TCGACTCTCTTCCTCAAGCCCTTGTGGGAACCCCTTCTCGATCATGGTTTCTGGCGATATGAGCTCTGCAACAAA GACGTCAAGACTTATCTCAGTGCCACTGGTCTTCTCATGTCTTACATCTGGCTCATCTGCTCCGAGCCAGACCTG CTGATCGCAAAACAACACAACTTGGTGCCCCGTAAGCTCAACTGGGCAGCTTGGGCCTTCTTCTCCCGGGACTTC CTCGACAGGCATTCTCTAGACGGACACAACGAGGACATGGCCAAACGATACGACTACGGCGAGTTACGAATCCAA CGCCTCAACTTGATCTATCGGTTCGCGCCCGAGACGTTCCCAAACTATCTCCTCCGCGGCTATCTCTACGGCTAC AACCAGTTCAGCCAGTTCTTCGGCCGTAACTTTGCCTGGGCGGCCGTGGCGGTGCTGTATGCTGGTGTCGTGCTG GCGGCTATGCAGGTGGCGCTCGCCGTGCCTCCTATCAAGGACGACGTGAGTTTCCAGAGGGCGGCTTATGGATTT ACCGTCTTCATTCTGGTTGCCATGGTCTTCTTCTCTACTTTCGCGCTGGCGTATCTTGTCATCGTGTTTAATTTG AACCTCATCTTCACCAGACAGAAAGTCAGGCAACATGAGCAACGGGCAAAGGAAGCGACGAGGTCGAACAACGCC CCATAG
Transcript	>Ophcf2\|02782 ATGTCACCTCCCCTTCCGAGATGGCAGGCCGACTCGGGAGCCAGCAATTCGAGACCGTTTTACGCCGAGCCCCCC TTCAACAGAGACGTGGCGCCCGTCGTCAACGGAAGATTTCGATATGATTCCAGTGATTGCAGTGAAGGCTCGATG ACCTCTGGTGCGAGCCAATTCTGCTCGCCGCCTTTGGATGCCATTAATTTCTCGTCTTACAAGGACTTGACGCCG ACTCTCTACCTTGCAGGCGGTCAAAAGGGAGCAAGAGCCTATCGCATCGACTCCATCGAGGAATATCTCGCTGCC TCTTTCGACCTGGAACGGCTCCATCTCATTCAAAACCGTCTATGGCTGGCCGGACTCCCCGTTCCCGCACGGTCG TTGCATAGACAAAAGATACTCGGTCGCGAGATTGTCATCACGGATCAGTCAGACCTGCATCTCACCTGGCGTGAG TCGACTCTCTTCCTCAAGCCCTTGTGGGAACCCCTTCTCGATCATGGTTTCTGGCGATATGAGCTCTGCAACAAA GACGTCAAGACTTATCTCAGTGCCACTGGTCTTCTCATGTCTTACATCTGGCTCATCTGCTCCGAGCCAGACCTG CTGATCGCAAAACAACACAACTTGGTGCCCCGTAAGCTCAACTGGGCAGCTTGGGCCTTCTTCTCCCGGGACTTC CTCGACAGGCATTCTCTAGACGGACACAACGAGGACATGGCCAAACGATACGACTACGGCGAGTTACGAATCCAA CGCCTCAACTTGATCTATCGGTTCGCGCCCGAGACGTTCCCAAACTATCTCCTCCGCGGCTATCTCTACGGCTAC AACCAGTTCAGCCAGTTCTTCGGCCGTAACTTTGCCTGGGCGGCCGTGGCGGTGCTGTATGCTGGTGTCGTGCTG GCGGCTATGCAGGTGGCGCTCGCCGTGCCTCCTATCAAGGACGACGTGAGTTTCCAGAGGGCGGCTTATGGATTT ACCGTCTTCATTCTGGTTGCCATGGTCTTCTTCTCTACTTTCGCGCTGGCGTATCTTGTCATCGTGTTTAATTTG AACCTCATCTTCACCAGACAGAAAGTCAGGCAACATGAGCAACGGGCAAAGGAAGCGACGAGGTCGAACAACGCC CCATAG
Gene	>Ophcf2\|02782 ATGTCACCTCCCCTTCCGAGATGGCAGGCCGACTCGGGAGCCAGCAATTCGAGACCGTTTTACGCCGAGCCCCCC TTCAACAGAGACGTGGCGCCCGTCGTCAACGGAAGATTTCGATATGATTCCAGTGATTGCAGTGAAGGCTCGATG ACCTCTGGTGCGAGCCAATTCTGCTCGCCGCCTTTGGATGCCATTAATTTCTCGTCTTACAAGGACTTGACGCCG ACTCTCTACCTTGCAGGCGGTCAAAAGGGAGCAAGAGCCTATCGCATCGACTCCATCGAGGAATATCTCGCTGCC TCTTTCGACCTGGAACGGCTCCATCTCATTCAAAACCGTCTATGGCTGGCCGGACTCCCCGTTCCCGCACGGTCG TTGCATAGACAAAAGATACTCGGTCGCGAGATTGTCATCACGGATCAGTCAGACCTGCATCTCACCTGGCGTGAG TCGACTCTCTTCCTCAAGCCCTTGTGGGAACCCCTTCTCGATCATGGTTTCTGGCGATATGAGCTCTGCAACAAA GACGTCAAGACTTATCTCAGTGCCACTGGTCTTCTCATGTCTTACATCTGGCTCATCTGCTCCGAGCCAGACCTG CTGATCGCAAAACAACACAACTTGGTGCCCCGTAAGCTCAACTGGGCAGCTTGGGCCTTCTTCTCCCGGGACTTC CTCGACAGGCATTCTCTAGACGGACACAACGAGGACATGGCCAAACGATACGACTACGGCGAGTTACGAATCCAA CGCCTCAACTTGATCTATCGGTTCGCGCCCGAGACGTTCCCAAACTATCTCCTCCGCGGCTATCTCTACGGCTAC AACCAGTTCAGCCAGTTCTTCGGCCGTAACTTTGCCTGGGCGGCCGTGGCGGTGCTGTATGCTGGTGTCGTGCTG GCGGCTATGCAGGTGGCGCTCGCCGTGCCTCCTATCAAGGACGACGTGAGTTTCCAGAGGGCGGCTTATGGATTT ACCGTCTTCATTCTGGTTGCCATGGTCTTCTTCTCTACTTTCGCGCTGGCGTATCTTGTCATCGTGTTTAATTTG AACCTCATCTTCACCAGACAGAAAGTCAGGCAACATGAGCAACGGGCAAAGGAAGCGACGAGGTCGAACAACGCC CCATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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