Protein ID | Ophcf2|02782 |
Gene name | |
Location | scaffold_02:4748332..4749463 |
Strand | - |
Gene length (bp) | 1131 |
Transcript length (bp) | 1131 |
Coding sequence length (bp) | 1131 |
Protein length (aa) | 377 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF20246 | DUF6601 | Family of unknown function (DUF6601) | 1.2E-72 | 95 | 332 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide|Transmembrane domain | 0.1165 | 0.0442 | 0.1957 | 0.5969 | 0.1977 | 0.0395 | 0.5721 | 0.5549 | 0.5257 | 0.0137 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 286 | 308 | 22 |
2 | 328 | 350 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 798 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|02782 MSPPLPRWQADSGASNSRPFYAEPPFNRDVAPVVNGRFRYDSSDCSEGSMTSGASQFCSPPLDAINFSSYKDLTP TLYLAGGQKGARAYRIDSIEEYLAASFDLERLHLIQNRLWLAGLPVPARSLHRQKILGREIVITDQSDLHLTWRE STLFLKPLWEPLLDHGFWRYELCNKDVKTYLSATGLLMSYIWLICSEPDLLIAKQHNLVPRKLNWAAWAFFSRDF LDRHSLDGHNEDMAKRYDYGELRIQRLNLIYRFAPETFPNYLLRGYLYGYNQFSQFFGRNFAWAAVAVLYAGVVL AAMQVALAVPPIKDDVSFQRAAYGFTVFILVAMVFFSTFALAYLVIVFNLNLIFTRQKVRQHEQRAKEATRSNNA P* |
Coding | >Ophcf2|02782 ATGTCACCTCCCCTTCCGAGATGGCAGGCCGACTCGGGAGCCAGCAATTCGAGACCGTTTTACGCCGAGCCCCCC TTCAACAGAGACGTGGCGCCCGTCGTCAACGGAAGATTTCGATATGATTCCAGTGATTGCAGTGAAGGCTCGATG ACCTCTGGTGCGAGCCAATTCTGCTCGCCGCCTTTGGATGCCATTAATTTCTCGTCTTACAAGGACTTGACGCCG ACTCTCTACCTTGCAGGCGGTCAAAAGGGAGCAAGAGCCTATCGCATCGACTCCATCGAGGAATATCTCGCTGCC TCTTTCGACCTGGAACGGCTCCATCTCATTCAAAACCGTCTATGGCTGGCCGGACTCCCCGTTCCCGCACGGTCG TTGCATAGACAAAAGATACTCGGTCGCGAGATTGTCATCACGGATCAGTCAGACCTGCATCTCACCTGGCGTGAG TCGACTCTCTTCCTCAAGCCCTTGTGGGAACCCCTTCTCGATCATGGTTTCTGGCGATATGAGCTCTGCAACAAA GACGTCAAGACTTATCTCAGTGCCACTGGTCTTCTCATGTCTTACATCTGGCTCATCTGCTCCGAGCCAGACCTG CTGATCGCAAAACAACACAACTTGGTGCCCCGTAAGCTCAACTGGGCAGCTTGGGCCTTCTTCTCCCGGGACTTC CTCGACAGGCATTCTCTAGACGGACACAACGAGGACATGGCCAAACGATACGACTACGGCGAGTTACGAATCCAA CGCCTCAACTTGATCTATCGGTTCGCGCCCGAGACGTTCCCAAACTATCTCCTCCGCGGCTATCTCTACGGCTAC AACCAGTTCAGCCAGTTCTTCGGCCGTAACTTTGCCTGGGCGGCCGTGGCGGTGCTGTATGCTGGTGTCGTGCTG GCGGCTATGCAGGTGGCGCTCGCCGTGCCTCCTATCAAGGACGACGTGAGTTTCCAGAGGGCGGCTTATGGATTT ACCGTCTTCATTCTGGTTGCCATGGTCTTCTTCTCTACTTTCGCGCTGGCGTATCTTGTCATCGTGTTTAATTTG AACCTCATCTTCACCAGACAGAAAGTCAGGCAACATGAGCAACGGGCAAAGGAAGCGACGAGGTCGAACAACGCC CCATAG |
Transcript | >Ophcf2|02782 ATGTCACCTCCCCTTCCGAGATGGCAGGCCGACTCGGGAGCCAGCAATTCGAGACCGTTTTACGCCGAGCCCCCC TTCAACAGAGACGTGGCGCCCGTCGTCAACGGAAGATTTCGATATGATTCCAGTGATTGCAGTGAAGGCTCGATG ACCTCTGGTGCGAGCCAATTCTGCTCGCCGCCTTTGGATGCCATTAATTTCTCGTCTTACAAGGACTTGACGCCG ACTCTCTACCTTGCAGGCGGTCAAAAGGGAGCAAGAGCCTATCGCATCGACTCCATCGAGGAATATCTCGCTGCC TCTTTCGACCTGGAACGGCTCCATCTCATTCAAAACCGTCTATGGCTGGCCGGACTCCCCGTTCCCGCACGGTCG TTGCATAGACAAAAGATACTCGGTCGCGAGATTGTCATCACGGATCAGTCAGACCTGCATCTCACCTGGCGTGAG TCGACTCTCTTCCTCAAGCCCTTGTGGGAACCCCTTCTCGATCATGGTTTCTGGCGATATGAGCTCTGCAACAAA GACGTCAAGACTTATCTCAGTGCCACTGGTCTTCTCATGTCTTACATCTGGCTCATCTGCTCCGAGCCAGACCTG CTGATCGCAAAACAACACAACTTGGTGCCCCGTAAGCTCAACTGGGCAGCTTGGGCCTTCTTCTCCCGGGACTTC CTCGACAGGCATTCTCTAGACGGACACAACGAGGACATGGCCAAACGATACGACTACGGCGAGTTACGAATCCAA CGCCTCAACTTGATCTATCGGTTCGCGCCCGAGACGTTCCCAAACTATCTCCTCCGCGGCTATCTCTACGGCTAC AACCAGTTCAGCCAGTTCTTCGGCCGTAACTTTGCCTGGGCGGCCGTGGCGGTGCTGTATGCTGGTGTCGTGCTG GCGGCTATGCAGGTGGCGCTCGCCGTGCCTCCTATCAAGGACGACGTGAGTTTCCAGAGGGCGGCTTATGGATTT ACCGTCTTCATTCTGGTTGCCATGGTCTTCTTCTCTACTTTCGCGCTGGCGTATCTTGTCATCGTGTTTAATTTG AACCTCATCTTCACCAGACAGAAAGTCAGGCAACATGAGCAACGGGCAAAGGAAGCGACGAGGTCGAACAACGCC CCATAG |
Gene | >Ophcf2|02782 ATGTCACCTCCCCTTCCGAGATGGCAGGCCGACTCGGGAGCCAGCAATTCGAGACCGTTTTACGCCGAGCCCCCC TTCAACAGAGACGTGGCGCCCGTCGTCAACGGAAGATTTCGATATGATTCCAGTGATTGCAGTGAAGGCTCGATG ACCTCTGGTGCGAGCCAATTCTGCTCGCCGCCTTTGGATGCCATTAATTTCTCGTCTTACAAGGACTTGACGCCG ACTCTCTACCTTGCAGGCGGTCAAAAGGGAGCAAGAGCCTATCGCATCGACTCCATCGAGGAATATCTCGCTGCC TCTTTCGACCTGGAACGGCTCCATCTCATTCAAAACCGTCTATGGCTGGCCGGACTCCCCGTTCCCGCACGGTCG TTGCATAGACAAAAGATACTCGGTCGCGAGATTGTCATCACGGATCAGTCAGACCTGCATCTCACCTGGCGTGAG TCGACTCTCTTCCTCAAGCCCTTGTGGGAACCCCTTCTCGATCATGGTTTCTGGCGATATGAGCTCTGCAACAAA GACGTCAAGACTTATCTCAGTGCCACTGGTCTTCTCATGTCTTACATCTGGCTCATCTGCTCCGAGCCAGACCTG CTGATCGCAAAACAACACAACTTGGTGCCCCGTAAGCTCAACTGGGCAGCTTGGGCCTTCTTCTCCCGGGACTTC CTCGACAGGCATTCTCTAGACGGACACAACGAGGACATGGCCAAACGATACGACTACGGCGAGTTACGAATCCAA CGCCTCAACTTGATCTATCGGTTCGCGCCCGAGACGTTCCCAAACTATCTCCTCCGCGGCTATCTCTACGGCTAC AACCAGTTCAGCCAGTTCTTCGGCCGTAACTTTGCCTGGGCGGCCGTGGCGGTGCTGTATGCTGGTGTCGTGCTG GCGGCTATGCAGGTGGCGCTCGCCGTGCCTCCTATCAAGGACGACGTGAGTTTCCAGAGGGCGGCTTATGGATTT ACCGTCTTCATTCTGGTTGCCATGGTCTTCTTCTCTACTTTCGCGCTGGCGTATCTTGTCATCGTGTTTAATTTG AACCTCATCTTCACCAGACAGAAAGTCAGGCAACATGAGCAACGGGCAAAGGAAGCGACGAGGTCGAACAACGCC CCATAG |