© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02719 |
| Gene name | |
| Location | scaffold_02:4496381..4497485 |
| Strand | + |
| Gene length (bp) | 1104 |
| Transcript length (bp) | 996 |
| Coding sequence length (bp) | 996 |
| Protein length (aa) | 332 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01398 | JAB | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 6.8E-33 | 30 | 140 |
| PF13012 | MitMem_reg | Maintenance of mitochondrial structure and function | 3.8E-12 | 175 | 288 |
| PF14464 | Prok-JAB | Prokaryotic homologs of the JAB domain | 4.0E-06 | 40 | 131 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0070122 | obsolete isopeptidase activity | Yes |
| GO:0140492 | metal-dependent deubiquitinase activity | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0019783 | ubiquitin-like protein peptidase activity | No |
| GO:0008237 | metallopeptidase activity | No |
| GO:0008233 | peptidase activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0101005 | deubiquitinase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0005488 | binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear export signal | 0.4453 | 0.5274 | 0.022 | 0.3382 | 0.2181 | 0.0069 | 0.1694 | 0.3995 | 0.1974 | 0.0575 |
| Orthofinder run ID | 4 |
| Orthogroup | 2532 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02719 MDRFRSLLGGGMSLGGASHGTDNTNLIDNSETVYISSLALLKMLRHGRAGVPMEVMGLMLGEFVDDFTVKVMDVF AMPQSGTGVSVEAVDPVFQTKMMDMLRQTGRPESVVGWYHSHPGFGCWLSSVDINTQQSFEQLNPRAVAVVVDPI QSVKGKVVIDAFRLINPQLLMMGQEPRQSTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKTALEENMLMNLHKH VWTEALQMDDFVSEGNKNKERLQRLVSLADGYERRVKEETELSKEQLKTRYVGKLDPKKHLEDVGQEIIEDNIVS VSRQMIDKEATMPKKEDRQPSPNGGDQMDVE* |
| Coding | >Ophcf2|02719 ATGGACAGGTTCAGGAGTTTACTAGGCGGCGGTATGAGCCTGGGAGGAGCCTCTCATGGCACGGATAACACCAAT CTCATCGACAACTCCGAGACGGTCTATATCTCTTCGCTGGCACTGCTCAAGATGCTGCGACACGGGCGCGCCGGC GTCCCCATGGAGGTCATGGGCTTGATGCTTGGCGAATTCGTCGACGACTTTACCGTCAAAGTCATGGATGTCTTT GCCATGCCTCAAAGCGGCACAGGCGTCAGCGTCGAGGCTGTCGATCCCGTCTTTCAGACCAAGATGATGGACATG CTGCGGCAAACTGGACGGCCCGAGTCTGTCGTCGGCTGGTATCACTCGCATCCTGGCTTCGGCTGTTGGCTGTCT TCGGTGGACATCAACACGCAGCAGTCGTTTGAGCAGCTCAACCCCCGCGCCGTCGCCGTCGTCGTCGATCCCATC CAGTCAGTCAAGGGAAAAGTGGTCATTGATGCCTTCCGCCTCATCAACCCGCAGCTTCTGATGATGGGTCAAGAG CCCCGCCAGAGCACGAGTAACCTGGGACACCTCAACAAGCCGTCTATCCAAGCCCTCATCCACGGACTCAACCGA CACTACTACTCCATCGCCATCAACTACCGCAAGACAGCGCTCGAGGAGAACATGCTCATGAACCTGCACAAGCAC GTATGGACCGAAGCGCTGCAAATGGACGACTTTGTATCCGAGGGCAACAAGAACAAGGAGCGGCTGCAACGCCTG GTCAGCCTGGCCGACGGCTACGAAAGGCGGGTCAAGGAGGAGACGGAGCTCAGCAAGGAGCAGCTCAAGACGCGA TACGTCGGCAAGCTCGATCCCAAGAAGCATCTGGAGGACGTGGGGCAGGAGATAATCGAAGACAACATCGTCTCC GTGTCGCGACAGATGATTGATAAGGAAGCGACGATGCCCAAGAAAGAAGACCGGCAGCCTTCTCCCAACGGCGGC GACCAGATGGACGTGGAATGA |
| Transcript | >Ophcf2|02719 ATGGACAGGTTCAGGAGTTTACTAGGCGGCGGTATGAGCCTGGGAGGAGCCTCTCATGGCACGGATAACACCAAT CTCATCGACAACTCCGAGACGGTCTATATCTCTTCGCTGGCACTGCTCAAGATGCTGCGACACGGGCGCGCCGGC GTCCCCATGGAGGTCATGGGCTTGATGCTTGGCGAATTCGTCGACGACTTTACCGTCAAAGTCATGGATGTCTTT GCCATGCCTCAAAGCGGCACAGGCGTCAGCGTCGAGGCTGTCGATCCCGTCTTTCAGACCAAGATGATGGACATG CTGCGGCAAACTGGACGGCCCGAGTCTGTCGTCGGCTGGTATCACTCGCATCCTGGCTTCGGCTGTTGGCTGTCT TCGGTGGACATCAACACGCAGCAGTCGTTTGAGCAGCTCAACCCCCGCGCCGTCGCCGTCGTCGTCGATCCCATC CAGTCAGTCAAGGGAAAAGTGGTCATTGATGCCTTCCGCCTCATCAACCCGCAGCTTCTGATGATGGGTCAAGAG CCCCGCCAGAGCACGAGTAACCTGGGACACCTCAACAAGCCGTCTATCCAAGCCCTCATCCACGGACTCAACCGA CACTACTACTCCATCGCCATCAACTACCGCAAGACAGCGCTCGAGGAGAACATGCTCATGAACCTGCACAAGCAC GTATGGACCGAAGCGCTGCAAATGGACGACTTTGTATCCGAGGGCAACAAGAACAAGGAGCGGCTGCAACGCCTG GTCAGCCTGGCCGACGGCTACGAAAGGCGGGTCAAGGAGGAGACGGAGCTCAGCAAGGAGCAGCTCAAGACGCGA TACGTCGGCAAGCTCGATCCCAAGAAGCATCTGGAGGACGTGGGGCAGGAGATAATCGAAGACAACATCGTCTCC GTGTCGCGACAGATGATTGATAAGGAAGCGACGATGCCCAAGAAAGAAGACCGGCAGCCTTCTCCCAACGGCGGC GACCAGATGGACGTGGAATGA |
| Gene | >Ophcf2|02719 ATGGACAGGTTCAGGAGTTTACTAGGCGGCGGTATGAGCCTGGGAGGAGCCTCTCATGGCACGGTATGCCCTCCC CTACGAGCTCTGATCTTGCAGCTACTCACACAGCTCAGGATAACACCAATCTCATCGACAACTCCGAGACGGTCT ATATCTCTTCGCTGGCACTGCTCAAGATGCTGCGACACGGGCGCGCCGGCGTCCCCATGGAGGTCATGGGCTTGA TGCTTGGCGAATTCGTCGACGACTTTACCGTCAAAGTCATGGATGTCTTTGCCATGCCTCAAAGCGGCACAGGCG TCAGCGTCGAGGCTGTCGATCCCGTCTTTCAGACCAAGATGATGGACATGCTGCGGCAAACTGGACGGTGAGCAG GCCGATCTAGAAGGAGAATCGCACGGAGAACTTGCTGATGTCGCGTGTAGGCCCGAGTCTGTCGTCGGCTGGTAT CACTCGCATCCTGGCTTCGGCTGTTGGCTGTCTTCGGTGGACATCAACACGCAGCAGTCGTTTGAGCAGCTCAAC CCCCGCGCCGTCGCCGTCGTCGTCGATCCCATCCAGTCAGTCAAGGGAAAAGTGGTCATTGATGCCTTCCGCCTC ATCAACCCGCAGCTTCTGATGATGGGTCAAGAGCCCCGCCAGAGCACGAGTAACCTGGGACACCTCAACAAGCCG TCTATCCAAGCCCTCATCCACGGACTCAACCGACACTACTACTCCATCGCCATCAACTACCGCAAGACAGCGCTC GAGGAGAACATGCTCATGAACCTGCACAAGCACGTATGGACCGAAGCGCTGCAAATGGACGACTTTGTATCCGAG GGCAACAAGAACAAGGAGCGGCTGCAACGCCTGGTCAGCCTGGCCGACGGCTACGAAAGGCGGGTCAAGGAGGAG ACGGAGCTCAGCAAGGAGCAGCTCAAGACGCGATACGTCGGCAAGCTCGATCCCAAGAAGCATCTGGAGGACGTG GGGCAGGAGATAATCGAAGACAACATCGTCTCCGTGTCGCGACAGATGATTGATAAGGAAGCGACGATGCCCAAG AAAGAAGACCGGCAGCCTTCTCCCAACGGCGGCGACCAGATGGACGTGGAATGA |