Protein ID | Ophcf2|02704 |
Gene name | |
Location | scaffold_02:4462345..4464277 |
Strand | + |
Gene length (bp) | 1932 |
Transcript length (bp) | 1716 |
Coding sequence length (bp) | 1716 |
Protein length (aa) | 572 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00515 | TPR_1 | Tetratricopeptide repeat | 4.3E-07 | 281 | 305 |
PF17830 | STI1 | STI1 domain | 3.5E-20 | 136 | 190 |
PF17830 | STI1 | STI1 domain | 2.0E-15 | 512 | 562 |
PF13432 | TPR_16 | Tetratricopeptide repeat | 3.1E-05 | 9 | 62 |
PF13424 | TPR_12 | Tetratricopeptide repeat | 7.7E-08 | 281 | 346 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 4.6E-04 | 280 | 306 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 2.1E-02 | 319 | 346 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 2.3E-01 | 448 | 479 |
PF13176 | TPR_7 | Tetratricopeptide repeat | 2.1E-02 | 281 | 307 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 66 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|02704 MASADELKALGNKAIAEKNFDDAIDKFTQAIALQPDNHILYSNRSAAYASKKQWDEALKDADKTTEIKPDWAKGW GRKGAALHGKGDLVGANDAYEEGLKHDASNAQLKSGLASVQKAMQQEAGKLAPFPQGMFNDPNLMQKLAANPKTS SFLADPTFLARLRQIQSNPSNVQELFTDQRMITVLGVLMGVDMDVRDSDPRAQDTPMPDAHESSRSKPASKPEPE PEPEELDEEAVEKKKKKAEADKEKALGTEKYKKREFDESIVHYSRAWDIFPDITYLNNLGAAYFEKGDYDKCIES CTKAIDEGRQMYADFKLIAKSYARIGTAHEKKGDLALAVENYNRSLTEHRTPEVLNKLRAAERAKLEAGKKAYID PAKAEEAREEGNKKFKETDFPGAVAAYSEMIKRAPDDARGYSNRAAAFIKLFEFPSALDDCDAAIKRDPTFIRAY IRKAQAYFGMRKYSECVDACAEAQQVDQEHHSGANAREIEQQQQKAFGAMYSARDNETEEQTRERLNRDPEIMSI MQDPVMQSILQQAQSDPKALQEHMRNPSVRTKIQKLIAAGVIRVGR* |
Coding | >Ophcf2|02704 ATGGCTTCCGCGGACGAGCTCAAGGCTCTGGGCAACAAGGCCATTGCCGAAAAGAACTTTGACGATGCCATCGAC AAATTCACCCAGGCCATCGCCCTCCAGCCCGACAACCACATCCTCTACAGCAACCGTTCCGCCGCATACGCCTCC AAGAAGCAATGGGACGAAGCGCTCAAGGATGCCGACAAGACGACCGAGATCAAACCCGATTGGGCCAAAGGATGG GGGCGAAAGGGCGCGGCTCTGCATGGCAAAGGCGACCTGGTGGGAGCCAACGACGCGTATGAGGAGGGTCTGAAG CACGACGCCAGCAACGCGCAGCTGAAGAGCGGACTGGCATCTGTTCAAAAGGCGATGCAGCAAGAAGCAGGCAAG CTGGCACCGTTTCCGCAAGGCATGTTTAACGACCCCAACCTTATGCAGAAACTCGCCGCGAATCCAAAGACCAGT TCTTTTCTAGCAGATCCGACATTCCTGGCCAGGCTGCGTCAGATCCAGAGCAACCCCTCAAACGTTCAGGAACTC TTCACCGACCAGAGAATGATTACGGTGCTTGGCGTCCTGATGGGTGTCGACATGGACGTGCGGGACAGCGATCCT AGAGCTCAGGATACGCCCATGCCCGACGCGCACGAGTCCTCGAGATCGAAGCCGGCCAGCAAACCCGAGCCGGAG CCGGAGCCGGAGGAGCTCGACGAGGAGGCTGTCGAGAAGAAAAAGAAAAAGGCCGAGGCGGACAAGGAAAAGGCC CTGGGCACGGAAAAGTACAAGAAGCGCGAGTTTGACGAGTCCATTGTGCATTACAGCAGAGCGTGGGACATTTTT CCCGACATCACCTACCTCAACAACCTCGGAGCCGCCTACTTCGAAAAGGGCGACTACGACAAATGCATAGAGTCG TGCACCAAGGCCATCGACGAGGGCCGACAGATGTACGCAGACTTTAAGCTGATTGCCAAGAGCTATGCCCGCATT GGCACAGCGCACGAGAAGAAGGGGGACCTGGCACTGGCTGTCGAGAACTACAACCGGTCTTTGACCGAGCACCGG ACGCCGGAAGTGCTCAACAAGCTGCGTGCCGCAGAGAGGGCCAAGCTCGAGGCCGGCAAGAAGGCGTACATCGAC CCCGCCAAGGCGGAAGAGGCCCGCGAGGAGGGCAACAAGAAGTTCAAGGAGACAGACTTCCCCGGCGCCGTGGCG GCGTATTCCGAGATGATAAAGCGCGCGCCCGATGACGCCCGCGGGTACAGCAACCGGGCGGCGGCCTTTATCAAG CTATTCGAATTCCCCAGCGCGCTGGATGATTGCGACGCCGCCATCAAGCGAGATCCGACCTTTATTCGAGCCTAC ATCCGCAAGGCTCAGGCCTACTTTGGCATGCGCAAGTACTCGGAATGCGTCGACGCGTGCGCCGAGGCCCAGCAG GTGGACCAAGAGCATCACAGCGGCGCCAACGCGCGCGAGATTGAGCAGCAGCAGCAGAAGGCGTTCGGTGCCATG TACTCGGCGCGGGACAACGAGACGGAAGAGCAGACGCGAGAGAGGCTCAACAGAGACCCCGAGATTATGAGTATC ATGCAGGACCCGGTGATGCAGAGCATCTTGCAGCAGGCGCAGTCGGATCCCAAGGCTCTTCAGGAACACATGCGG AATCCCAGCGTGCGGACCAAGATCCAGAAGCTGATTGCAGCGGGAGTGATTCGGGTTGGGCGCTAA |
Transcript | >Ophcf2|02704 ATGGCTTCCGCGGACGAGCTCAAGGCTCTGGGCAACAAGGCCATTGCCGAAAAGAACTTTGACGATGCCATCGAC AAATTCACCCAGGCCATCGCCCTCCAGCCCGACAACCACATCCTCTACAGCAACCGTTCCGCCGCATACGCCTCC AAGAAGCAATGGGACGAAGCGCTCAAGGATGCCGACAAGACGACCGAGATCAAACCCGATTGGGCCAAAGGATGG GGGCGAAAGGGCGCGGCTCTGCATGGCAAAGGCGACCTGGTGGGAGCCAACGACGCGTATGAGGAGGGTCTGAAG CACGACGCCAGCAACGCGCAGCTGAAGAGCGGACTGGCATCTGTTCAAAAGGCGATGCAGCAAGAAGCAGGCAAG CTGGCACCGTTTCCGCAAGGCATGTTTAACGACCCCAACCTTATGCAGAAACTCGCCGCGAATCCAAAGACCAGT TCTTTTCTAGCAGATCCGACATTCCTGGCCAGGCTGCGTCAGATCCAGAGCAACCCCTCAAACGTTCAGGAACTC TTCACCGACCAGAGAATGATTACGGTGCTTGGCGTCCTGATGGGTGTCGACATGGACGTGCGGGACAGCGATCCT AGAGCTCAGGATACGCCCATGCCCGACGCGCACGAGTCCTCGAGATCGAAGCCGGCCAGCAAACCCGAGCCGGAG CCGGAGCCGGAGGAGCTCGACGAGGAGGCTGTCGAGAAGAAAAAGAAAAAGGCCGAGGCGGACAAGGAAAAGGCC CTGGGCACGGAAAAGTACAAGAAGCGCGAGTTTGACGAGTCCATTGTGCATTACAGCAGAGCGTGGGACATTTTT CCCGACATCACCTACCTCAACAACCTCGGAGCCGCCTACTTCGAAAAGGGCGACTACGACAAATGCATAGAGTCG TGCACCAAGGCCATCGACGAGGGCCGACAGATGTACGCAGACTTTAAGCTGATTGCCAAGAGCTATGCCCGCATT GGCACAGCGCACGAGAAGAAGGGGGACCTGGCACTGGCTGTCGAGAACTACAACCGGTCTTTGACCGAGCACCGG ACGCCGGAAGTGCTCAACAAGCTGCGTGCCGCAGAGAGGGCCAAGCTCGAGGCCGGCAAGAAGGCGTACATCGAC CCCGCCAAGGCGGAAGAGGCCCGCGAGGAGGGCAACAAGAAGTTCAAGGAGACAGACTTCCCCGGCGCCGTGGCG GCGTATTCCGAGATGATAAAGCGCGCGCCCGATGACGCCCGCGGGTACAGCAACCGGGCGGCGGCCTTTATCAAG CTATTCGAATTCCCCAGCGCGCTGGATGATTGCGACGCCGCCATCAAGCGAGATCCGACCTTTATTCGAGCCTAC ATCCGCAAGGCTCAGGCCTACTTTGGCATGCGCAAGTACTCGGAATGCGTCGACGCGTGCGCCGAGGCCCAGCAG GTGGACCAAGAGCATCACAGCGGCGCCAACGCGCGCGAGATTGAGCAGCAGCAGCAGAAGGCGTTCGGTGCCATG TACTCGGCGCGGGACAACGAGACGGAAGAGCAGACGCGAGAGAGGCTCAACAGAGACCCCGAGATTATGAGTATC ATGCAGGACCCGGTGATGCAGAGCATCTTGCAGCAGGCGCAGTCGGATCCCAAGGCTCTTCAGGAACACATGCGG AATCCCAGCGTGCGGACCAAGATCCAGAAGCTGATTGCAGCGGGAGTGATTCGGGTTGGGCGCTAA |
Gene | >Ophcf2|02704 ATGGCTTCCGCGGACGAGCTCAAGGCTCTGGGCAACAAGGCCATTGCCGAAAAGAACTTTGACGATGCCATGTGC GTTTATCCCTCCATTGGCCGTCGGGCAGCAGATCCACGGCTTCTGCTCCGTATAGAAACTGATGCCGTCTCTCTT TAGCGACAAATTCACCCAGGCCATCGCCCTCCAGCCCGACAACCACATCCTCTACAGCAACCGTTCCGCCGCATA CGCCTCCAAGAAGCAATGGGACGAAGCGCTCAAGGATGCCGACAAGACGACCGAGATCAAACCCGATTGGGCCAA AGGATGGGGGCGAAAGGGCGCGGCTCTGCATGGCAAAGGCGACCTGGTGGGAGCCAACGACGCGTATGAGGAGGG TCTGAAGCACGACGCCAGCAACGCGCAGCTGAAGAGCGGACTGGCATCTGTTCAAAAGGCGATGCAGCAAGAAGC AGGCAAGCTGGCACCGTTTCCGCAAGGCGTCTGGCACACGACGCTGACTTGTTCTCTTCCCGACAGGCGACTTCG GCGGAGATCCCACTGGCGGTCTCGGCCAGATGTTTAACGACCCCAACCTTATGCAGAAACTCGCCGCGAATCCAA AGACCAGTTCTTTTCTAGCAGATCCGACATTCCTGGCCAGGCTGCGTCAGATCCAGAGCAACCCCTCAAACGTTC AGGAACTCTTCACCGACCAGAGAATGATTACGGTGCTTGGCGTCCTGATGGGTGTCGACATGGACGTGCGGGACA GCGATCCTAGAGCTCAGGATACGCCCATGCCCGACGCGCACGAGTCCTCGAGATCGAAGCCGGCCAGCAAACCCG AGCCGGAGCCGGAGCCGGAGGAGCTCGACGAGGAGGCTGTCGAGAAGAAAAAGAAAAAGGCCGAGGCGGACAAGG AAAAGGCCCTGGGCACGGAAAAGTACAAGAAGCGCGAGTTTGACGAGTCCATTGTGCATTACAGCAGAGCGTGGG ACATTTTTCCCGACATCACCTACCTCAACAACCTCGGAGCCGCCTACTTCGAAAAGGGCGACTACGACAAATGCA TAGAGTCGTGCACCAAGGCCATCGACGAGGGCCGACAGATGTACGCAGACTTTAAGCTGATTGCCAAGAGCTATG CCCGCATTGGCACAGCGCACGAGAAGAAGGGGGACCTGGCACTGGCTGTCGAGAACTACAACCGGTCTTTGACCG AGCACCGGACGCCGGAAGTGCTCAACAAGCTGCGTGCCGCAGAGAGGGCCAAGCTCGAGGCCGGCAAGAAGGCGT ACATCGACCCCGCCAAGGCGGAAGAGGCCCGCGAGGAGGGCAACAAGAAGTTCAAGGAGACAGACTTCCCCGGCG CCGTGGCGGCGTATTCCGAGATGATAAAGCGCGCGCCCGATGACGCCCGCGGGTACAGCAACCGGGCGGCGGCCT TTATCAAGCTATTCGAATTCCCCAGCGCGCTGGATGATTGCGACGCCGCCATCAAGCGAGATCCGACCTTTATTC GAGCCTACATCCGCAAGGCTCAGGCCTACTTTGGCATGCGCAAGTACTCGGAATGCGTCGACGCGTGCGCCGAGG CCCAGCAGGTGGACCAAGAGCATCACAGCGGCGCCAACGCGCGCGAGATTGAGCAGCAGCAGCAGAAGGCGTTCG GTGCCATGTACTCGGCGCGGGACAACGAGACGGAAGAGCAGACGCGAGAGAGGCTCAACAGAGACCCCGAGGTGA GAGACGAGCATCCTTTACAGTTGTGAAAGATGGCGACTGACGGTGCTCTGGCAGATTATGAGTATCATGCAGGAC CCGGTGATGCAGAGCATCTTGCAGCAGGCGCAGTCGGATCCCAAGGCTCTTCAGGAACACATGCGGAATCCCAGC GTGCGGACCAAGATCCAGAAGCTGATTGCAGCGGGAGTGATTCGGGTTGGGCGCTAA |