Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|02700
Gene name
Location	scaffold_02:4455930..4457333
Strand	-
Gene length (bp)	1403
Transcript length (bp)	1233
Coding sequence length (bp)	1233
Protein length (aa)	411

PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 17	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	72	94	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	60.31	33.86	86.76
Alive	In ants, during behavior modification	38.66	20.32	57.00
Dead	In ants, recently dead	51.05	28.27	73.83

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.021081	yes
Alive	Dead	0.112675	no
Dead	Fungus	0.425779	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|02700 MLRRLPLAALRASVAASTARTTVPSLVSTARTISLRPWKRKATPALPLPVYFPRETWSTRLNYWKAPVVRAILST FLGLLGFLALISVTLVPLMDWADEEWELLSDAEREAFESDHGDDDAWLFIPFPPFAHFTEVQSPYDMNDPDTRRS FQEFLDPVLQQKIRSEVYEIIFYAMGRETQISQVLGTRNPRVGRQWLDLTYPFRPPNKEYMAGLFFRSDGIYLGL QQIDDVEAQILKKTIWPESIALASLTFGTSLVKHYFENFLKHDDTAQASSNKTQPASPVSVSKPTPTKNPDEDAD APKPSFLSALKPTHLQVLHDSKRPSESVVDPYVRKAMMDGYKKWRACESRVETPLTAGAIAVRGAVEFYGPRFAL TFHFRGYYDPKPGKWLGLKITLLHLRDRVTGQIVR*
Coding	>Ophcf2\|02700 ATGCTCCGCCGTCTGCCGCTTGCCGCGCTGCGAGCCTCTGTAGCCGCATCTACAGCGCGCACGACAGTCCCGTCA TTGGTCTCGACGGCCAGAACCATTTCCTTGCGGCCATGGAAGCGAAAAGCGACACCTGCGCTACCGCTGCCAGTC TATTTCCCCAGAGAGACTTGGTCAACCCGGTTGAATTACTGGAAAGCTCCTGTCGTACGAGCGATTTTGTCGACT TTCCTCGGGTTATTGGGCTTCTTGGCCCTAATTTCTGTCACGTTGGTCCCCTTGATGGACTGGGCCGATGAAGAA TGGGAGCTTCTTAGTGATGCAGAAAGAGAAGCCTTCGAATCGGATCATGGCGATGACGACGCCTGGTTATTCATC CCTTTTCCCCCTTTCGCACACTTCACCGAGGTTCAGTCGCCATACGACATGAATGACCCCGATACGAGACGGTCT TTTCAGGAATTTCTCGACCCGGTTCTCCAACAGAAGATACGTTCGGAAGTCTACGAGATCATATTCTATGCCATG GGGAGAGAAACCCAAATTTCCCAAGTCCTCGGCACCAGAAATCCGCGAGTTGGGAGACAATGGCTGGACCTTACA TATCCATTTCGTCCCCCTAACAAGGAATACATGGCCGGCCTGTTTTTCAGGAGCGACGGCATCTACTTGGGTCTC CAGCAGATTGATGATGTGGAAGCTCAGATCCTGAAAAAGACCATTTGGCCTGAATCTATCGCCTTGGCCTCTTTG ACCTTCGGCACATCCCTCGTCAAGCATTATTTCGAAAACTTTTTGAAACACGACGATACAGCCCAGGCCTCGTCA AATAAGACGCAGCCCGCGTCACCCGTTTCAGTCTCCAAGCCCACCCCGACCAAAAACCCTGACGAAGATGCAGAC GCCCCCAAGCCATCCTTCCTTTCCGCCCTCAAACCCACACACCTCCAAGTCCTACACGATTCAAAAAGACCGAGC GAGTCCGTCGTCGATCCCTACGTACGCAAGGCGATGATGGATGGTTACAAGAAATGGAGGGCTTGCGAGTCTCGA GTCGAGACACCACTTACCGCGGGCGCCATCGCCGTACGCGGTGCCGTAGAGTTCTATGGCCCTCGGTTCGCCCTC ACCTTTCATTTTCGAGGTTATTACGATCCGAAGCCGGGGAAGTGGCTCGGGCTCAAGATTACCCTTTTGCACCTG AGGGATCGCGTCACTGGACAGATAGTCAGGTGA
Transcript	>Ophcf2\|02700 ATGCTCCGCCGTCTGCCGCTTGCCGCGCTGCGAGCCTCTGTAGCCGCATCTACAGCGCGCACGACAGTCCCGTCA TTGGTCTCGACGGCCAGAACCATTTCCTTGCGGCCATGGAAGCGAAAAGCGACACCTGCGCTACCGCTGCCAGTC TATTTCCCCAGAGAGACTTGGTCAACCCGGTTGAATTACTGGAAAGCTCCTGTCGTACGAGCGATTTTGTCGACT TTCCTCGGGTTATTGGGCTTCTTGGCCCTAATTTCTGTCACGTTGGTCCCCTTGATGGACTGGGCCGATGAAGAA TGGGAGCTTCTTAGTGATGCAGAAAGAGAAGCCTTCGAATCGGATCATGGCGATGACGACGCCTGGTTATTCATC CCTTTTCCCCCTTTCGCACACTTCACCGAGGTTCAGTCGCCATACGACATGAATGACCCCGATACGAGACGGTCT TTTCAGGAATTTCTCGACCCGGTTCTCCAACAGAAGATACGTTCGGAAGTCTACGAGATCATATTCTATGCCATG GGGAGAGAAACCCAAATTTCCCAAGTCCTCGGCACCAGAAATCCGCGAGTTGGGAGACAATGGCTGGACCTTACA TATCCATTTCGTCCCCCTAACAAGGAATACATGGCCGGCCTGTTTTTCAGGAGCGACGGCATCTACTTGGGTCTC CAGCAGATTGATGATGTGGAAGCTCAGATCCTGAAAAAGACCATTTGGCCTGAATCTATCGCCTTGGCCTCTTTG ACCTTCGGCACATCCCTCGTCAAGCATTATTTCGAAAACTTTTTGAAACACGACGATACAGCCCAGGCCTCGTCA AATAAGACGCAGCCCGCGTCACCCGTTTCAGTCTCCAAGCCCACCCCGACCAAAAACCCTGACGAAGATGCAGAC GCCCCCAAGCCATCCTTCCTTTCCGCCCTCAAACCCACACACCTCCAAGTCCTACACGATTCAAAAAGACCGAGC GAGTCCGTCGTCGATCCCTACGTACGCAAGGCGATGATGGATGGTTACAAGAAATGGAGGGCTTGCGAGTCTCGA GTCGAGACACCACTTACCGCGGGCGCCATCGCCGTACGCGGTGCCGTAGAGTTCTATGGCCCTCGGTTCGCCCTC ACCTTTCATTTTCGAGGTTATTACGATCCGAAGCCGGGGAAGTGGCTCGGGCTCAAGATTACCCTTTTGCACCTG AGGGATCGCGTCACTGGACAGATAGTCAGGTGA
Gene	>Ophcf2\|02700 ATGCTCCGCCGTCTGCCGCTTGCCGCGCTGCGAGCCTCTGTAGCCGCATCTACAGCGCGCACGACAGTCCCGTCA TTGGTCTCGACGGCCAGAACCATTTCCTTGCGGCCATGGAAGCGAAAAGCGACACCTGCGCTACCGCTGCCAGTC TATTTCCCCAGAGAGACTTGGTCAACCCGGTTGAATTACTGGAAAGCTCCTGTCGTGTATGGCGCTCCCCACACC GGTTCTTGGGAACGAGCATGGTTGCTGACGCCTTCAAGACGAGCGATTTTGTCGACTTTCCTCGGGTTATTGGGC TTCTTGGCCCTAATTTCTGTCACGTTGGTCCCCTTGATGGACTGGGCCGATGAAGAATGGGAGCTTCTTAGTGAT GCAGAAAGAGAAGCCTTCGAATCGGATCATGGCGATGACGACGCCTGGTTATTCATCCCTTTTCCCCCTTTCGCA CACTTCACCGAGGTTCAGTCGCCATACGACATGAATGACCCCGATACGAGACGGTCTTTTCAGGAATTTCTCGAC CCGGTTCTCCAACAGAAGATACGTTGTATGTTTGCAACAAGCTTTTTGGATGTTCCGCGGTGCTAACGTCCTCGC AGCGGAAGTCTACGAGATCATATTCTATGCCATGGGGAGAGAAACCCAAATTTCCCAAGTCCTCGGCACCAGAAA TCCGCGAGTTGGGAGACAATGGCTGGACCTTACATATCCATTTCGTCCCCCTAACAAGGAATACATGGCCGGGTA AGTTTGAAGCCTCCTTCCAACTCTTCCCTGCCACGAATCGAGCCTGACAACCAGCCAGCCTGTTTTTCAGGAGCG ACGGCATCTACTTGGGTCTCCAGCAGATTGATGATGTGGAAGCTCAGATCCTGAAAAAGACCATTTGGCCTGAAT CTATCGCCTTGGCCTCTTTGACCTTCGGCACATCCCTCGTCAAGCATTATTTCGAAAACTTTTTGAAACACGACG ATACAGCCCAGGCCTCGTCAAATAAGACGCAGCCCGCGTCACCCGTTTCAGTCTCCAAGCCCACCCCGACCAAAA ACCCTGACGAAGATGCAGACGCCCCCAAGCCATCCTTCCTTTCCGCCCTCAAACCCACACACCTCCAAGTCCTAC ACGATTCAAAAAGACCGAGCGAGTCCGTCGTCGATCCCTACGTACGCAAGGCGATGATGGATGGTTACAAGAAAT GGAGGGCTTGCGAGTCTCGAGTCGAGACACCACTTACCGCGGGCGCCATCGCCGTACGCGGTGCCGTAGAGTTCT ATGGCCCTCGGTTCGCCCTCACCTTTCATTTTCGAGGTTATTACGATCCGAAGCCGGGGAAGTGGCTCGGGCTCA AGATTACCCTTTTGCACCTGAGGGATCGCGTCACTGGACAGATAGTCAGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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