© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|02691 |
| Gene name | |
| Location | scaffold_02:4440245..4441743 |
| Strand | + |
| Gene length (bp) | 1498 |
| Transcript length (bp) | 1368 |
| Coding sequence length (bp) | 1368 |
| Protein length (aa) | 456 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05730 | CFEM | CFEM domain | 9.2E-10 | 38 | 96 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 16 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 105 | 127 | 22 |
| 2 | 142 | 159 | 17 |
| 3 | 187 | 209 | 22 |
| 4 | 219 | 241 | 22 |
| 5 | 271 | 293 | 22 |
| 6 | 303 | 322 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 23.99 | 11.93 | 36.06 |
| Alive | In ants, during behavior modification | 46.23 | 25.54 | 66.91 |
| Dead | In ants, recently dead | 27.88 | 14.22 | 41.55 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000851 | yes |
| Alive | Dead | 0.003436 | yes |
| Dead | Fungus | 0.535687 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02691 MRLAILAVVVGLAAATDDWLWPRASNDSNAIAEMLPLYPVCAQPCIETALANSPCSETRCICMDQGFRGEVRNCV KASCRIRDAMQSKNTTEHACQRPRRDKTSSFTAMSVSIAAVAYVIVAARLIFKQFFSQRRRLGVDDWLVFAGAVA GICCTVINVRGLSQHGIGKDVWTLQAETVSSFKLDFYLVALFYIIMTIVAKAAINFFYLSIFPGERTRLVLWVTA AVIISFGTASLLVSIFQCRPVSFYWKMYHPDQDLNGGSCINIHVAAFANGGINIGLNVWLIVIPLTVIRKLELHW KKKLGVTIMFLTGVFDTVVSILRLRSIVHFGNSWNPTWDQFDIAWWSVIETNVALICSSLPTMRLILVLVFPHVF STIRNKTNSTSSSSTVPRKNGSVDKNVPRMTTMSLEIIEAQNVPRDECEDDDEVANNSDEKSSEAKDRRDSLSIG IAITK* |
| Coding | >Ophcf2|02691 ATGAGGTTGGCAATCCTGGCCGTCGTCGTCGGATTGGCCGCCGCCACGGACGACTGGCTGTGGCCGAGGGCCTCC AACGACAGCAATGCCATCGCCGAGATGCTGCCTCTGTATCCGGTTTGCGCGCAACCTTGTATCGAGACGGCATTG GCCAACAGTCCCTGTTCGGAGACGAGGTGTATCTGTATGGATCAGGGGTTTCGAGGCGAGGTGCGGAATTGTGTC AAGGCCTCTTGCAGGATTCGCGATGCGATGCAGTCCAAGAACACGACCGAACATGCCTGCCAACGCCCCCGTCGC GACAAAACGTCGTCCTTTACAGCAATGAGCGTCTCCATCGCGGCCGTCGCCTACGTCATCGTTGCCGCCCGTCTC ATCTTCAAGCAATTCTTCAGTCAGAGGCGACGACTCGGTGTCGACGACTGGCTCGTCTTCGCCGGAGCCGTGGCG GGAATCTGCTGCACCGTCATCAACGTCCGGGGCCTGAGTCAACATGGAATCGGAAAGGACGTCTGGACGCTGCAG GCTGAGACGGTGTCCAGCTTCAAGCTGGATTTCTATCTGGTAGCCTTGTTCTACATCATCATGACCATTGTTGCC AAGGCTGCCATCAACTTCTTTTACCTCTCCATCTTTCCCGGGGAGCGGACGAGGCTGGTTCTCTGGGTTACGGCC GCCGTCATCATCAGCTTTGGCACGGCTTCTCTTCTCGTCAGCATCTTTCAGTGTCGGCCCGTCTCCTTTTACTGG AAGATGTATCACCCTGACCAAGATCTCAATGGCGGATCATGCATCAACATCCACGTCGCCGCCTTTGCCAACGGC GGCATCAACATCGGGCTCAACGTCTGGCTCATCGTCATCCCGCTGACCGTCATCCGCAAGCTAGAGCTCCACTGG AAGAAGAAGCTGGGCGTGACCATCATGTTCCTAACAGGCGTCTTCGACACCGTCGTCTCCATACTGCGACTGCGA TCCATCGTCCACTTCGGCAACTCGTGGAATCCGACGTGGGATCAGTTCGATATCGCCTGGTGGTCCGTCATCGAG ACCAACGTCGCCCTCATCTGCTCCAGTCTTCCGACCATGCGTCTCATCCTCGTCTTGGTCTTCCCGCATGTGTTT AGCACGATTCGCAACAAGACGAACTCGACGTCTTCGTCTTCTACCGTTCCTCGAAAGAACGGTTCCGTCGATAAG AATGTTCCTCGCATGACGACGATGAGTCTTGAAATCATTGAAGCTCAGAACGTACCGCGAGACGAATGTGAAGAC GACGACGAAGTTGCCAACAACAGCGATGAGAAATCAAGCGAAGCCAAGGATCGAAGAGACTCGTTATCCATCGGA ATCGCCATCACGAAATAA |
| Transcript | >Ophcf2|02691 ATGAGGTTGGCAATCCTGGCCGTCGTCGTCGGATTGGCCGCCGCCACGGACGACTGGCTGTGGCCGAGGGCCTCC AACGACAGCAATGCCATCGCCGAGATGCTGCCTCTGTATCCGGTTTGCGCGCAACCTTGTATCGAGACGGCATTG GCCAACAGTCCCTGTTCGGAGACGAGGTGTATCTGTATGGATCAGGGGTTTCGAGGCGAGGTGCGGAATTGTGTC AAGGCCTCTTGCAGGATTCGCGATGCGATGCAGTCCAAGAACACGACCGAACATGCCTGCCAACGCCCCCGTCGC GACAAAACGTCGTCCTTTACAGCAATGAGCGTCTCCATCGCGGCCGTCGCCTACGTCATCGTTGCCGCCCGTCTC ATCTTCAAGCAATTCTTCAGTCAGAGGCGACGACTCGGTGTCGACGACTGGCTCGTCTTCGCCGGAGCCGTGGCG GGAATCTGCTGCACCGTCATCAACGTCCGGGGCCTGAGTCAACATGGAATCGGAAAGGACGTCTGGACGCTGCAG GCTGAGACGGTGTCCAGCTTCAAGCTGGATTTCTATCTGGTAGCCTTGTTCTACATCATCATGACCATTGTTGCC AAGGCTGCCATCAACTTCTTTTACCTCTCCATCTTTCCCGGGGAGCGGACGAGGCTGGTTCTCTGGGTTACGGCC GCCGTCATCATCAGCTTTGGCACGGCTTCTCTTCTCGTCAGCATCTTTCAGTGTCGGCCCGTCTCCTTTTACTGG AAGATGTATCACCCTGACCAAGATCTCAATGGCGGATCATGCATCAACATCCACGTCGCCGCCTTTGCCAACGGC GGCATCAACATCGGGCTCAACGTCTGGCTCATCGTCATCCCGCTGACCGTCATCCGCAAGCTAGAGCTCCACTGG AAGAAGAAGCTGGGCGTGACCATCATGTTCCTAACAGGCGTCTTCGACACCGTCGTCTCCATACTGCGACTGCGA TCCATCGTCCACTTCGGCAACTCGTGGAATCCGACGTGGGATCAGTTCGATATCGCCTGGTGGTCCGTCATCGAG ACCAACGTCGCCCTCATCTGCTCCAGTCTTCCGACCATGCGTCTCATCCTCGTCTTGGTCTTCCCGCATGTGTTT AGCACGATTCGCAACAAGACGAACTCGACGTCTTCGTCTTCTACCGTTCCTCGAAAGAACGGTTCCGTCGATAAG AATGTTCCTCGCATGACGACGATGAGTCTTGAAATCATTGAAGCTCAGAACGTACCGCGAGACGAATGTGAAGAC GACGACGAAGTTGCCAACAACAGCGATGAGAAATCAAGCGAAGCCAAGGATCGAAGAGACTCGTTATCCATCGGA ATCGCCATCACGAAATAA |
| Gene | >Ophcf2|02691 ATGAGGTTGGCAATCCTGGCCGTCGTCGTCGGATTGGCCGCCGCCACGGACGACTGGCTGTGGCCGAGGGCCTCC AACGACAGCAATGCCATCGCCGAGATGCTGCCTCTGTATCCGGTTTGCGCGGTAAGACGACGAGGCCTGGCCGTG CTTCCAAGAGGGGAGTTTTACTGACCGACGAGGTTGTTGCCAGCAACCTTGTATCGAGACGGCATTGGCCAACAG TCCCTGTTCGGAGACGAGGTGTATCTGTATGGATCAGGGGTTTCGAGGCGAGGTGCGGAATTGTGTCAAGGCCTC TTGCAGGATTCGCGATGCGATGCGTGAGTTTGGACGGGTTTCCCCGGCATCTACGCCTTGAACCTTGACTGAAGA TGGAGATGCAGAGTCCAAGAACACGACCGAACATGCCTGCCAACGCCCCCGTCGCGACAAAACGTCGTCCTTTAC AGCAATGAGCGTCTCCATCGCGGCCGTCGCCTACGTCATCGTTGCCGCCCGTCTCATCTTCAAGCAATTCTTCAG TCAGAGGCGACGACTCGGTGTCGACGACTGGCTCGTCTTCGCCGGAGCCGTGGCGGGAATCTGCTGCACCGTCAT CAACGTCCGGGGCCTGAGTCAACATGGAATCGGAAAGGACGTCTGGACGCTGCAGGCTGAGACGGTGTCCAGCTT CAAGCTGGATTTCTATCTGGTAGCCTTGTTCTACATCATCATGACCATTGTTGCCAAGGCTGCCATCAACTTCTT TTACCTCTCCATCTTTCCCGGGGAGCGGACGAGGCTGGTTCTCTGGGTTACGGCCGCCGTCATCATCAGCTTTGG CACGGCTTCTCTTCTCGTCAGCATCTTTCAGTGTCGGCCCGTCTCCTTTTACTGGAAGATGTATCACCCTGACCA AGATCTCAATGGCGGATCATGCATCAACATCCACGTCGCCGCCTTTGCCAACGGCGGCATCAACATCGGGCTCAA CGTCTGGCTCATCGTCATCCCGCTGACCGTCATCCGCAAGCTAGAGCTCCACTGGAAGAAGAAGCTGGGCGTGAC CATCATGTTCCTAACAGGCGTCTTCGACACCGTCGTCTCCATACTGCGACTGCGATCCATCGTCCACTTCGGCAA CTCGTGGAATCCGACGTGGGATCAGTTCGATATCGCCTGGTGGTCCGTCATCGAGACCAACGTCGCCCTCATCTG CTCCAGTCTTCCGACCATGCGTCTCATCCTCGTCTTGGTCTTCCCGCATGTGTTTAGCACGATTCGCAACAAGAC GAACTCGACGTCTTCGTCTTCTACCGTTCCTCGAAAGAACGGTTCCGTCGATAAGAATGTTCCTCGCATGACGAC GATGAGTCTTGAAATCATTGAAGCTCAGAACGTACCGCGAGACGAATGTGAAGACGACGACGAAGTTGCCAACAA CAGCGATGAGAAATCAAGCGAAGCCAAGGATCGAAGAGACTCGTTATCCATCGGAATCGCCATCACGAAATAA |