© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02673 |
| Gene name | |
| Location | scaffold_02:4389386..4391054 |
| Strand | + |
| Gene length (bp) | 1668 |
| Transcript length (bp) | 1668 |
| Coding sequence length (bp) | 1668 |
| Protein length (aa) | 556 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 6.7E-120 | 55 | 514 |
| PF13520 | AA_permease_2 | Amino acid permease | 8.6E-29 | 58 | 479 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
| 2 | 85 | 104 | 19 |
| 3 | 134 | 156 | 22 |
| 4 | 166 | 188 | 22 |
| 5 | 195 | 217 | 22 |
| 6 | 250 | 272 | 22 |
| 7 | 293 | 310 | 17 |
| 8 | 325 | 347 | 22 |
| 9 | 386 | 405 | 19 |
| 10 | 410 | 432 | 22 |
| 11 | 453 | 475 | 22 |
| 12 | 490 | 507 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02673 MDSGEKALNGPPPAMEKHESLDDGVGDELEAASPASEYNLARQHDQLARGLKSRHIQFLALGGAIGTGLFVGSGA ILASTGPAPLFMAYLSMMLVVWNVMNVLAEMTVYLPMRGITVPYLVGRFLDPSLAFADGWNYWYAYAMLVGAEAT AAGIVIEYWKPPVNIGVWIAIVLVVMLLLNIVAVSFFGEAEFWFASIKLLTLCGLVILGIVIFFGGAPDQHGVLG FSYWKDPGSFVPFRAAGATGRFLGYWHAFVTAGFAFVTSPELIAIAAGETVAPRRNIPKAARRFVWRLALFYGLS SLIIGVIVPFDDKRLLGASNASASPFVIGIQRVGIPVLNNIINAAILTSAWSAGNSFLYSGSRVLYSMSLSGQAP RWFRTTNRNGVPYVAVLFTWCFGLLAFLNVSNSGSTVFNWLVNISTVSGFIAWVVAMMTYLRFRRALVSRNMLQT LPYLTPLQPYATYCTLVVVSLLIITNGFQTLMPPFNARDFVAAYITIPAFFVLYVVHKAVKRTPLCIPTDEIDVL TGKKEMDELEAMDEERKPKNWLQKAWYWLA* |
| Coding | >Ophcf2|02673 ATGGACTCGGGAGAAAAGGCCCTCAACGGCCCGCCACCTGCGATGGAGAAGCACGAGTCACTGGATGACGGCGTC GGTGACGAGCTCGAGGCCGCATCGCCAGCCAGCGAGTACAATCTCGCGCGGCAGCACGACCAGCTCGCACGCGGA CTCAAGAGCCGTCACATCCAGTTCCTCGCCCTCGGAGGTGCCATCGGTACGGGACTCTTCGTCGGTTCCGGCGCC ATCTTGGCGTCTACCGGTCCGGCGCCGCTGTTCATGGCTTACCTCTCCATGATGCTCGTCGTGTGGAACGTCATG AACGTGCTGGCCGAGATGACGGTTTATCTGCCGATGCGAGGCATCACCGTTCCTTACCTGGTTGGTCGCTTTCTC GATCCTAGCTTGGCCTTTGCCGACGGCTGGAACTACTGGTACGCGTATGCGATGCTTGTCGGCGCAGAGGCCACG GCTGCGGGCATCGTCATCGAATACTGGAAGCCGCCGGTCAACATTGGCGTCTGGATCGCCATTGTGCTGGTCGTC ATGTTACTTCTCAACATTGTTGCCGTTAGCTTCTTCGGCGAGGCCGAGTTCTGGTTCGCCAGCATCAAGCTGCTC ACGCTCTGCGGCCTCGTCATCCTCGGCATCGTCATCTTCTTCGGTGGCGCCCCCGACCAGCACGGTGTCCTGGGC TTCTCGTACTGGAAAGATCCCGGCTCTTTCGTGCCTTTCAGAGCAGCCGGTGCCACGGGTCGCTTTCTCGGTTAC TGGCATGCTTTCGTCACGGCTGGCTTCGCCTTCGTCACGTCGCCAGAGCTCATCGCCATCGCCGCCGGCGAGACG GTGGCCCCCCGACGCAACATACCCAAGGCGGCCCGTCGCTTCGTATGGCGTCTCGCGCTCTTCTACGGCCTTTCG TCGCTCATCATCGGAGTCATCGTGCCCTTTGACGACAAGCGGCTGCTGGGCGCATCCAACGCCAGCGCATCGCCC TTTGTCATCGGCATCCAGCGCGTCGGCATCCCGGTCCTCAACAACATCATCAACGCCGCCATCCTCACCTCGGCC TGGTCCGCCGGCAACTCCTTTCTCTACTCGGGCAGCCGCGTGCTGTACTCGATGTCCCTCAGCGGCCAAGCGCCT CGCTGGTTCCGGACGACGAACCGCAATGGGGTGCCGTACGTCGCCGTCCTCTTCACCTGGTGCTTCGGCCTGTTG GCCTTTCTCAACGTTTCCAACTCGGGATCCACCGTCTTTAACTGGCTCGTCAACATCTCCACCGTCTCGGGCTTC ATCGCCTGGGTCGTCGCCATGATGACATACCTCCGTTTCCGCCGTGCGCTCGTCAGCCGGAACATGTTGCAGACG CTGCCGTACCTCACACCGCTGCAACCGTACGCGACCTACTGCACGCTCGTCGTCGTGTCGCTGCTCATCATCACC AACGGCTTTCAGACGTTGATGCCGCCCTTTAATGCCAGAGATTTTGTAGCCGCTTACATCACCATACCGGCTTTC TTCGTCTTATATGTCGTCCACAAGGCCGTCAAGCGCACGCCGCTTTGCATTCCAACGGACGAGATTGACGTGCTG ACCGGCAAGAAGGAGATGGACGAATTGGAGGCCATGGATGAGGAGCGAAAGCCCAAGAATTGGCTGCAAAAGGCG TGGTATTGGCTGGCTTGA |
| Transcript | >Ophcf2|02673 ATGGACTCGGGAGAAAAGGCCCTCAACGGCCCGCCACCTGCGATGGAGAAGCACGAGTCACTGGATGACGGCGTC GGTGACGAGCTCGAGGCCGCATCGCCAGCCAGCGAGTACAATCTCGCGCGGCAGCACGACCAGCTCGCACGCGGA CTCAAGAGCCGTCACATCCAGTTCCTCGCCCTCGGAGGTGCCATCGGTACGGGACTCTTCGTCGGTTCCGGCGCC ATCTTGGCGTCTACCGGTCCGGCGCCGCTGTTCATGGCTTACCTCTCCATGATGCTCGTCGTGTGGAACGTCATG AACGTGCTGGCCGAGATGACGGTTTATCTGCCGATGCGAGGCATCACCGTTCCTTACCTGGTTGGTCGCTTTCTC GATCCTAGCTTGGCCTTTGCCGACGGCTGGAACTACTGGTACGCGTATGCGATGCTTGTCGGCGCAGAGGCCACG GCTGCGGGCATCGTCATCGAATACTGGAAGCCGCCGGTCAACATTGGCGTCTGGATCGCCATTGTGCTGGTCGTC ATGTTACTTCTCAACATTGTTGCCGTTAGCTTCTTCGGCGAGGCCGAGTTCTGGTTCGCCAGCATCAAGCTGCTC ACGCTCTGCGGCCTCGTCATCCTCGGCATCGTCATCTTCTTCGGTGGCGCCCCCGACCAGCACGGTGTCCTGGGC TTCTCGTACTGGAAAGATCCCGGCTCTTTCGTGCCTTTCAGAGCAGCCGGTGCCACGGGTCGCTTTCTCGGTTAC TGGCATGCTTTCGTCACGGCTGGCTTCGCCTTCGTCACGTCGCCAGAGCTCATCGCCATCGCCGCCGGCGAGACG GTGGCCCCCCGACGCAACATACCCAAGGCGGCCCGTCGCTTCGTATGGCGTCTCGCGCTCTTCTACGGCCTTTCG TCGCTCATCATCGGAGTCATCGTGCCCTTTGACGACAAGCGGCTGCTGGGCGCATCCAACGCCAGCGCATCGCCC TTTGTCATCGGCATCCAGCGCGTCGGCATCCCGGTCCTCAACAACATCATCAACGCCGCCATCCTCACCTCGGCC TGGTCCGCCGGCAACTCCTTTCTCTACTCGGGCAGCCGCGTGCTGTACTCGATGTCCCTCAGCGGCCAAGCGCCT CGCTGGTTCCGGACGACGAACCGCAATGGGGTGCCGTACGTCGCCGTCCTCTTCACCTGGTGCTTCGGCCTGTTG GCCTTTCTCAACGTTTCCAACTCGGGATCCACCGTCTTTAACTGGCTCGTCAACATCTCCACCGTCTCGGGCTTC ATCGCCTGGGTCGTCGCCATGATGACATACCTCCGTTTCCGCCGTGCGCTCGTCAGCCGGAACATGTTGCAGACG CTGCCGTACCTCACACCGCTGCAACCGTACGCGACCTACTGCACGCTCGTCGTCGTGTCGCTGCTCATCATCACC AACGGCTTTCAGACGTTGATGCCGCCCTTTAATGCCAGAGATTTTGTAGCCGCTTACATCACCATACCGGCTTTC TTCGTCTTATATGTCGTCCACAAGGCCGTCAAGCGCACGCCGCTTTGCATTCCAACGGACGAGATTGACGTGCTG ACCGGCAAGAAGGAGATGGACGAATTGGAGGCCATGGATGAGGAGCGAAAGCCCAAGAATTGGCTGCAAAAGGCG TGGTATTGGCTGGCTTGA |
| Gene | >Ophcf2|02673 ATGGACTCGGGAGAAAAGGCCCTCAACGGCCCGCCACCTGCGATGGAGAAGCACGAGTCACTGGATGACGGCGTC GGTGACGAGCTCGAGGCCGCATCGCCAGCCAGCGAGTACAATCTCGCGCGGCAGCACGACCAGCTCGCACGCGGA CTCAAGAGCCGTCACATCCAGTTCCTCGCCCTCGGAGGTGCCATCGGTACGGGACTCTTCGTCGGTTCCGGCGCC ATCTTGGCGTCTACCGGTCCGGCGCCGCTGTTCATGGCTTACCTCTCCATGATGCTCGTCGTGTGGAACGTCATG AACGTGCTGGCCGAGATGACGGTTTATCTGCCGATGCGAGGCATCACCGTTCCTTACCTGGTTGGTCGCTTTCTC GATCCTAGCTTGGCCTTTGCCGACGGCTGGAACTACTGGTACGCGTATGCGATGCTTGTCGGCGCAGAGGCCACG GCTGCGGGCATCGTCATCGAATACTGGAAGCCGCCGGTCAACATTGGCGTCTGGATCGCCATTGTGCTGGTCGTC ATGTTACTTCTCAACATTGTTGCCGTTAGCTTCTTCGGCGAGGCCGAGTTCTGGTTCGCCAGCATCAAGCTGCTC ACGCTCTGCGGCCTCGTCATCCTCGGCATCGTCATCTTCTTCGGTGGCGCCCCCGACCAGCACGGTGTCCTGGGC TTCTCGTACTGGAAAGATCCCGGCTCTTTCGTGCCTTTCAGAGCAGCCGGTGCCACGGGTCGCTTTCTCGGTTAC TGGCATGCTTTCGTCACGGCTGGCTTCGCCTTCGTCACGTCGCCAGAGCTCATCGCCATCGCCGCCGGCGAGACG GTGGCCCCCCGACGCAACATACCCAAGGCGGCCCGTCGCTTCGTATGGCGTCTCGCGCTCTTCTACGGCCTTTCG TCGCTCATCATCGGAGTCATCGTGCCCTTTGACGACAAGCGGCTGCTGGGCGCATCCAACGCCAGCGCATCGCCC TTTGTCATCGGCATCCAGCGCGTCGGCATCCCGGTCCTCAACAACATCATCAACGCCGCCATCCTCACCTCGGCC TGGTCCGCCGGCAACTCCTTTCTCTACTCGGGCAGCCGCGTGCTGTACTCGATGTCCCTCAGCGGCCAAGCGCCT CGCTGGTTCCGGACGACGAACCGCAATGGGGTGCCGTACGTCGCCGTCCTCTTCACCTGGTGCTTCGGCCTGTTG GCCTTTCTCAACGTTTCCAACTCGGGATCCACCGTCTTTAACTGGCTCGTCAACATCTCCACCGTCTCGGGCTTC ATCGCCTGGGTCGTCGCCATGATGACATACCTCCGTTTCCGCCGTGCGCTCGTCAGCCGGAACATGTTGCAGACG CTGCCGTACCTCACACCGCTGCAACCGTACGCGACCTACTGCACGCTCGTCGTCGTGTCGCTGCTCATCATCACC AACGGCTTTCAGACGTTGATGCCGCCCTTTAATGCCAGAGATTTTGTAGCCGCTTACATCACCATACCGGCTTTC TTCGTCTTATATGTCGTCCACAAGGCCGTCAAGCGCACGCCGCTTTGCATTCCAACGGACGAGATTGACGTGCTG ACCGGCAAGAAGGAGATGGACGAATTGGAGGCCATGGATGAGGAGCGAAAGCCCAAGAATTGGCTGCAAAAGGCG TGGTATTGGCTGGCTTGA |