© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02666 |
| Gene name | |
| Location | scaffold_02:4373448..4374502 |
| Strand | - |
| Gene length (bp) | 1054 |
| Transcript length (bp) | 939 |
| Coding sequence length (bp) | 939 |
| Protein length (aa) | 313 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00018 | SH3_1 | SH3 domain | 7.8E-08 | 259 | 306 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 63 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 36 | 58 | 22 |
| 2 | 71 | 93 | 22 |
| 3 | 103 | 125 | 22 |
| 4 | 132 | 154 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02666 MPPYGSLDSPSMSKMEQSRSYGRNGFRLGNILGDPFALATTSISALAWLITFISCIISQVQPTPRDETPFPPFAW WAVVYSFFLIGGIFVVVASDAVHTYHVAITGYLAAGLVLVTSGVNSLVYSKSGAREAAAAGFILLSILVIIWILY FGSTPSATPRAFIDSFALAKDSSAMQGQPMNAYGSGRPETSNSVQPPQMYTSAQLNGFENSSPIGNVSQVNGPRN STGPMGFASTTQQHHPKSNDVEVVAPTEYPYQAKAIYSYEANPDDANEITFVKHEILEVSDVSGRWWQARKQNGE IGIAPSNYLILL* |
| Coding | >Ophcf2|02666 ATGCCCCCTTACGGCTCCTTGGACTCGCCTTCCATGAGCAAAATGGAGCAATCGCGCAGCTATGGCCGCAATGGC TTCCGGCTGGGCAACATCTTGGGCGATCCCTTTGCCCTCGCCACCACCTCCATATCAGCCCTCGCATGGCTCATC ACCTTCATCTCGTGCATAATTTCTCAAGTACAGCCGACGCCTCGGGATGAAACACCCTTCCCACCATTTGCTTGG TGGGCCGTCGTCTACAGCTTCTTCCTCATTGGCGGCATCTTCGTCGTCGTCGCTAGCGATGCCGTTCACACCTAT CACGTCGCCATCACCGGTTACCTCGCCGCCGGCTTGGTCCTCGTCACTTCGGGCGTCAATTCTCTCGTCTACTCC AAGAGCGGGGCCAGAGAAGCCGCTGCTGCCGGCTTCATCCTGCTGTCCATTCTGGTGATTATCTGGATCCTCTAT TTCGGCTCCACGCCTTCGGCCACGCCCCGTGCCTTCATCGACTCCTTCGCCCTGGCCAAGGACTCGTCCGCCATG CAGGGTCAGCCGATGAACGCCTACGGCTCTGGCCGGCCCGAGACATCCAACTCGGTACAGCCTCCGCAGATGTAC ACCTCGGCTCAGCTCAACGGCTTCGAGAACTCGTCGCCCATTGGCAACGTCTCACAGGTAAACGGCCCCCGCAAC TCGACGGGGCCCATGGGTTTCGCCAGCACCACGCAGCAGCACCACCCAAAATCAAATGATGTCGAGGTCGTCGCC CCTACCGAGTACCCCTACCAAGCCAAGGCCATCTACAGCTACGAGGCCAACCCCGACGACGCCAACGAAATCACC TTTGTCAAGCACGAAATCCTCGAGGTGTCCGACGTAAGCGGGCGCTGGTGGCAGGCGCGGAAACAGAACGGCGAG ATTGGCATCGCCCCGAGCAACTATCTCATCCTATTATAG |
| Transcript | >Ophcf2|02666 ATGCCCCCTTACGGCTCCTTGGACTCGCCTTCCATGAGCAAAATGGAGCAATCGCGCAGCTATGGCCGCAATGGC TTCCGGCTGGGCAACATCTTGGGCGATCCCTTTGCCCTCGCCACCACCTCCATATCAGCCCTCGCATGGCTCATC ACCTTCATCTCGTGCATAATTTCTCAAGTACAGCCGACGCCTCGGGATGAAACACCCTTCCCACCATTTGCTTGG TGGGCCGTCGTCTACAGCTTCTTCCTCATTGGCGGCATCTTCGTCGTCGTCGCTAGCGATGCCGTTCACACCTAT CACGTCGCCATCACCGGTTACCTCGCCGCCGGCTTGGTCCTCGTCACTTCGGGCGTCAATTCTCTCGTCTACTCC AAGAGCGGGGCCAGAGAAGCCGCTGCTGCCGGCTTCATCCTGCTGTCCATTCTGGTGATTATCTGGATCCTCTAT TTCGGCTCCACGCCTTCGGCCACGCCCCGTGCCTTCATCGACTCCTTCGCCCTGGCCAAGGACTCGTCCGCCATG CAGGGTCAGCCGATGAACGCCTACGGCTCTGGCCGGCCCGAGACATCCAACTCGGTACAGCCTCCGCAGATGTAC ACCTCGGCTCAGCTCAACGGCTTCGAGAACTCGTCGCCCATTGGCAACGTCTCACAGGTAAACGGCCCCCGCAAC TCGACGGGGCCCATGGGTTTCGCCAGCACCACGCAGCAGCACCACCCAAAATCAAATGATGTCGAGGTCGTCGCC CCTACCGAGTACCCCTACCAAGCCAAGGCCATCTACAGCTACGAGGCCAACCCCGACGACGCCAACGAAATCACC TTTGTCAAGCACGAAATCCTCGAGGTGTCCGACGTAAGCGGGCGCTGGTGGCAGGCGCGGAAACAGAACGGCGAG ATTGGCATCGCCCCGAGCAACTATCTCATCCTATTATAG |
| Gene | >Ophcf2|02666 ATGCCCCCTTACGGCTCCTTGGACTCGCCTTCCATGAGCAAAATGGAGCAATCGCGCAGCTATGGCCGCAATGGC TTCCGGCTGGGCAACATCTTGGGCGATCCCTTTGCCCTCGCCACCACCTCCATATCAGCCGTACGTCTTTCTCCC TCCCTGTCCTGTCGCTCTCGTCGTTCCGTCGCTAATTGCCCTGCCCCCACAGCTCGCATGGCTCATCACCTTCAT CTCGTGCATAATTTCTCAAGTACAGCCGACGCCTCGGGATGAAACACCCTTCCCACCATTTGCTTGGTGGGCCGT CGTCTACAGCTTCTTCCTCATTGGCGGCATCTTCGTCGTCGTCGCTAGCGATGCCGTTCACACCTATCACGTCGC CATCACCGGTTACCTCGCCGCCGGCTTGGTCCTCGTCACTTCGGGCGTCAATTCTCTCGTCTACTCCAAGAGCGG GGCCAGAGAAGCCGCTGCTGCCGGCTTCATCCTGCTGTCCATTCTGGTGGTGAGTGCGCATCGTGACCCGGCGGC CCTACACGTGCTAACCATTTAGATTATCTGGATCCTCTATTTCGGCTCCACGCCTTCGGCCACGCCCCGTGCCTT CATCGACTCCTTCGCCCTGGCCAAGGACTCGTCCGCCATGCAGGGTCAGCCGATGAACGCCTACGGCTCTGGCCG GCCCGAGACATCCAACTCGGTACAGCCTCCGCAGATGTACACCTCGGCTCAGCTCAACGGCTTCGAGAACTCGTC GCCCATTGGCAACGTCTCACAGGTAAACGGCCCCCGCAACTCGACGGGGCCCATGGGTTTCGCCAGCACCACGCA GCAGCACCACCCAAAATCAAATGATGTCGAGGTCGTCGCCCCTACCGAGTACCCCTACCAAGCCAAGGCCATCTA CAGCTACGAGGCCAACCCCGACGACGCCAACGAAATCACCTTTGTCAAGCACGAAATCCTCGAGGTGTCCGACGT AAGCGGGCGCTGGTGGCAGGCGCGGAAACAGAACGGCGAGATTGGCATCGCCCCGAGCAACTATCTCATCCTATT ATAG |