© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02610 |
| Gene name | |
| Location | scaffold_02:4192886..4193963 |
| Strand | + |
| Gene length (bp) | 1077 |
| Transcript length (bp) | 972 |
| Coding sequence length (bp) | 972 |
| Protein length (aa) | 324 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10176 | DUF2370 | Protein of unknown function (DUF2370) | 1.4E-89 | 101 | 306 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030001 | metal ion transport | Yes |
| GO:0007034 | vacuolar transport | Yes |
| GO:0051641 | cellular localization | No |
| GO:0051179 | localization | No |
| GO:0006812 | cation transport | No |
| GO:0046907 | intracellular transport | No |
| GO:0008150 | biological_process | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0006810 | transport | No |
| GO:0006811 | ion transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1287 | 0.1679 | 0.0527 | 0.1163 | 0.0982 | 0.0022 | 0.3437 | 0.8477 | 0.5154 | 0.0166 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 176 | 198 | 22 |
| 2 | 262 | 284 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2840 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02610 MAGQYERVNDHDVEDPVDRSRNHVPSSPPPSFHSRSSSPSRRGSVDPALADAFDAEDGSDDEDDADDRQRLVRQN STHVPSDSPPHTPATAGEPEPASSGSRPRYVGGGVGTDGVFANLSARPERSETEKEEQPPTYEQAAADAAPPYWE TTILAPGFGGPDEVYVDGMPVGSVFSFIWNGMISTSFQLVGFLLTYLLHSTHAAKNGSRAGLGITLIQYGFYMKG TTEGDPPAMNGPDGYAMPPDPNSHDFQPGSVAEGGETVTMTGGEWMSYVLMVVGWFILIKSVAEYLRARRHEQLV MQSPDRGLGIPIIAEGEASEHVV* |
| Coding | >Ophcf2|02610 ATGGCTGGGCAGTACGAGCGGGTCAACGACCACGACGTCGAAGACCCGGTCGACCGATCCCGTAACCACGTCCCC AGCTCGCCGCCTCCGTCATTTCACTCGCGATCTTCGTCGCCGAGTCGCCGCGGCTCCGTCGACCCCGCGCTCGCC GACGCGTTCGATGCCGAAGACGGCAGCGATGACGAAGACGATGCCGACGATAGGCAGCGGCTAGTGCGACAAAAC TCTACGCATGTGCCGTCCGACTCGCCGCCGCATACGCCTGCCACTGCCGGAGAGCCGGAGCCGGCCTCGTCAGGC TCCCGTCCGAGATACGTCGGCGGCGGAGTCGGCACGGATGGTGTCTTCGCGAATCTATCGGCACGGCCGGAGCGC TCGGAAACGGAGAAGGAAGAGCAGCCTCCGACTTACGAGCAGGCAGCCGCCGACGCGGCACCGCCATATTGGGAG ACGACGATTTTGGCGCCGGGCTTTGGCGGCCCAGACGAGGTGTACGTGGATGGCATGCCCGTCGGCTCCGTCTTC TCTTTCATCTGGAACGGCATGATCTCGACGTCGTTCCAACTCGTCGGCTTCCTCTTGACGTATCTACTGCACTCG ACGCACGCGGCCAAGAACGGTTCGCGTGCGGGGCTCGGCATCACCCTGATCCAATATGGCTTCTATATGAAGGGC ACGACCGAGGGCGACCCGCCTGCGATGAACGGTCCAGATGGCTATGCGATGCCGCCGGACCCAAATTCTCACGAC TTCCAGCCCGGCTCGGTGGCCGAAGGCGGGGAAACGGTGACCATGACGGGCGGAGAGTGGATGTCGTACGTGTTG ATGGTGGTCGGGTGGTTCATCCTCATCAAGAGCGTGGCAGAATACCTGCGGGCTCGGCGGCACGAGCAGCTGGTC ATGCAGAGCCCGGATCGTGGACTGGGCATACCCATCATTGCCGAGGGTGAGGCATCGGAGCATGTGGTATAA |
| Transcript | >Ophcf2|02610 ATGGCTGGGCAGTACGAGCGGGTCAACGACCACGACGTCGAAGACCCGGTCGACCGATCCCGTAACCACGTCCCC AGCTCGCCGCCTCCGTCATTTCACTCGCGATCTTCGTCGCCGAGTCGCCGCGGCTCCGTCGACCCCGCGCTCGCC GACGCGTTCGATGCCGAAGACGGCAGCGATGACGAAGACGATGCCGACGATAGGCAGCGGCTAGTGCGACAAAAC TCTACGCATGTGCCGTCCGACTCGCCGCCGCATACGCCTGCCACTGCCGGAGAGCCGGAGCCGGCCTCGTCAGGC TCCCGTCCGAGATACGTCGGCGGCGGAGTCGGCACGGATGGTGTCTTCGCGAATCTATCGGCACGGCCGGAGCGC TCGGAAACGGAGAAGGAAGAGCAGCCTCCGACTTACGAGCAGGCAGCCGCCGACGCGGCACCGCCATATTGGGAG ACGACGATTTTGGCGCCGGGCTTTGGCGGCCCAGACGAGGTGTACGTGGATGGCATGCCCGTCGGCTCCGTCTTC TCTTTCATCTGGAACGGCATGATCTCGACGTCGTTCCAACTCGTCGGCTTCCTCTTGACGTATCTACTGCACTCG ACGCACGCGGCCAAGAACGGTTCGCGTGCGGGGCTCGGCATCACCCTGATCCAATATGGCTTCTATATGAAGGGC ACGACCGAGGGCGACCCGCCTGCGATGAACGGTCCAGATGGCTATGCGATGCCGCCGGACCCAAATTCTCACGAC TTCCAGCCCGGCTCGGTGGCCGAAGGCGGGGAAACGGTGACCATGACGGGCGGAGAGTGGATGTCGTACGTGTTG ATGGTGGTCGGGTGGTTCATCCTCATCAAGAGCGTGGCAGAATACCTGCGGGCTCGGCGGCACGAGCAGCTGGTC ATGCAGAGCCCGGATCGTGGACTGGGCATACCCATCATTGCCGAGGGTGAGGCATCGGAGCATGTGGTATAA |
| Gene | >Ophcf2|02610 ATGGCTGGGCAGTACGAGCGGGTTTGTGGCGTCACCGGTCTGTCATTGTTGATGAGGTGCTGACAATTAGCAGGT CAACGACCACGACGTCGAAGACCCGGTCGACCGATCCCGTAACCACGTCCCCAGCTCGCCGCCTCCGTCATTTCA CTCGCGATCTTCGTCGCCGAGTCGCCGCGGCTCCGTCGACCCCGCGCTCGCCGACGCGTTCGATGCCGAAGACGG CAGCGATGACGAAGACGATGCCGACGATAGGCAGCGGCTAGTGCGACAAAACTCTACGCATGTGCCGTCCGACTC GCCGCCGCATACGCCTGCCACTGCCGGAGAGCCGGAGCCGGCCTCGTCAGGCTCCCGTCCGAGATACGTCGGCGG CGGAGTCGGCACGGATGGTGTCTTCGCGAATCTATCGGCACGGCCGGAGCGCTCGGAAACGGAGAAGGAAGAGCA GCCTCCGGTGAGCAGTTCCGTCGCCGATTGTTGTTCTGAAACACTGACGCTGTCGGGTAGACTTACGAGCAGGCA GCCGCCGACGCGGCACCGCCATATTGGGAGACGACGATTTTGGCGCCGGGCTTTGGCGGCCCAGACGAGGTGTAC GTGGATGGCATGCCCGTCGGCTCCGTCTTCTCTTTCATCTGGAACGGCATGATCTCGACGTCGTTCCAACTCGTC GGCTTCCTCTTGACGTATCTACTGCACTCGACGCACGCGGCCAAGAACGGTTCGCGTGCGGGGCTCGGCATCACC CTGATCCAATATGGCTTCTATATGAAGGGCACGACCGAGGGCGACCCGCCTGCGATGAACGGTCCAGATGGCTAT GCGATGCCGCCGGACCCAAATTCTCACGACTTCCAGCCCGGCTCGGTGGCCGAAGGCGGGGAAACGGTGACCATG ACGGGCGGAGAGTGGATGTCGTACGTGTTGATGGTGGTCGGGTGGTTCATCCTCATCAAGAGCGTGGCAGAATAC CTGCGGGCTCGGCGGCACGAGCAGCTGGTCATGCAGAGCCCGGATCGTGGACTGGGCATACCCATCATTGCCGAG GGTGAGGCATCGGAGCATGTGGTATAA |