Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|02607
Gene name
Location	scaffold_02:4188079..4188529
Strand	+
Gene length (bp)	450
Transcript length (bp)	450
Coding sequence length (bp)	450
Protein length (aa)	150

PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 20	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	4	26	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	30.69	9.91	51.47
Alive	In ants, during behavior modification	1273.55	0.00	2725.18
Dead	In ants, recently dead	238.07	114.50	361.64

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.000238	yes
Alive	Dead	0.000238	yes
Dead	Fungus	0.000238	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|02607 MKLVLLPILLSLPVSLAAALELLYVGAAVDKKSITQQREDCLYDTEAFFSKDCPERPIENSGGDCMSLRRIAKDA CLTNQSIQASCSKAIERNDKVDCRVRADCWVQVVKILLTQCLSEKSLLASCMTYIQLAMGTCRDGGMADGESWQ*
Coding	>Ophcf2\|02607 ATGAAGTTAGTCCTGCTTCCCATCCTTCTGTCGCTTCCCGTCAGCCTGGCAGCTGCGCTGGAGCTGCTTTATGTC GGAGCCGCGGTGGACAAGAAAAGCATCACACAGCAAAGAGAGGACTGCCTTTACGATACAGAGGCCTTCTTTAGC AAAGACTGCCCCGAGCGACCGATCGAGAACAGCGGAGGGGATTGCATGTCGCTTCGCCGGATAGCCAAGGACGCG TGCCTAACGAATCAGTCGATACAGGCTTCCTGCAGCAAAGCGATCGAGAGAAACGACAAGGTAGACTGCAGAGTC CGGGCCGACTGCTGGGTGCAGGTCGTGAAGATCTTGTTGACGCAATGTTTGTCGGAAAAGTCGTTACTGGCGAGC TGCATGACCTACATCCAGCTCGCCATGGGCACCTGTCGTGACGGTGGAATGGCTGATGGAGAGTCGTGGCAGTGA
Transcript	>Ophcf2\|02607 ATGAAGTTAGTCCTGCTTCCCATCCTTCTGTCGCTTCCCGTCAGCCTGGCAGCTGCGCTGGAGCTGCTTTATGTC GGAGCCGCGGTGGACAAGAAAAGCATCACACAGCAAAGAGAGGACTGCCTTTACGATACAGAGGCCTTCTTTAGC AAAGACTGCCCCGAGCGACCGATCGAGAACAGCGGAGGGGATTGCATGTCGCTTCGCCGGATAGCCAAGGACGCG TGCCTAACGAATCAGTCGATACAGGCTTCCTGCAGCAAAGCGATCGAGAGAAACGACAAGGTAGACTGCAGAGTC CGGGCCGACTGCTGGGTGCAGGTCGTGAAGATCTTGTTGACGCAATGTTTGTCGGAAAAGTCGTTACTGGCGAGC TGCATGACCTACATCCAGCTCGCCATGGGCACCTGTCGTGACGGTGGAATGGCTGATGGAGAGTCGTGGCAGTGA
Gene	>Ophcf2\|02607 ATGAAGTTAGTCCTGCTTCCCATCCTTCTGTCGCTTCCCGTCAGCCTGGCAGCTGCGCTGGAGCTGCTTTATGTC GGAGCCGCGGTGGACAAGAAAAGCATCACACAGCAAAGAGAGGACTGCCTTTACGATACAGAGGCCTTCTTTAGC AAAGACTGCCCCGAGCGACCGATCGAGAACAGCGGAGGGGATTGCATGTCGCTTCGCCGGATAGCCAAGGACGCG TGCCTAACGAATCAGTCGATACAGGCTTCCTGCAGCAAAGCGATCGAGAGAAACGACAAGGTAGACTGCAGAGTC CGGGCCGACTGCTGGGTGCAGGTCGTGAAGATCTTGTTGACGCAATGTTTGTCGGAAAAGTCGTTACTGGCGAGC TGCATGACCTACATCCAGCTCGCCATGGGCACCTGTCGTGACGGTGGAATGGCTGATGGAGAGTCGTGGCAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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