© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02593 |
| Gene name | |
| Location | scaffold_02:4157155..4158316 |
| Strand | + |
| Gene length (bp) | 1161 |
| Transcript length (bp) | 1050 |
| Coding sequence length (bp) | 1050 |
| Protein length (aa) | 350 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00810 | ER_lumen_recept | ER lumen protein retaining receptor | 4.4E-41 | 31 | 175 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006621 | protein retention in ER lumen | Yes |
| GO:0046923 | ER retention sequence binding | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051235 | maintenance of location | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0042277 | peptide binding | No |
| GO:0072595 | maintenance of protein localization in organelle | No |
| GO:0035437 | maintenance of protein localization in endoplasmic reticulum | No |
| GO:0033218 | amide binding | No |
| GO:0005488 | binding | No |
| GO:0051651 | maintenance of location in cell | No |
| GO:0005048 | signal sequence binding | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0045185 | maintenance of protein location | No |
| GO:0032507 | maintenance of protein location in cell | No |
| GO:0008150 | biological_process | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 60 | 82 | 22 |
| 2 | 97 | 119 | 22 |
| 3 | 155 | 174 | 19 |
| 4 | 184 | 206 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 158.12 | 89.44 | 226.79 |
| Alive | In ants, during behavior modification | 77.19 | 42.62 | 111.76 |
| Dead | In ants, recently dead | 108.32 | 62.16 | 154.48 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.032627 | yes |
| Dead | Fungus | 0.038268 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02593 MTAWNIFRILGDLSHALSKCILITSMHRNRSAEGVSFITQALYALVFCTRYLDIFMERSVWNLLFKIFYILSSFY ILAVMQWVLPRSRERELSWKLGAAVLGGSLFLSPFMMLMFERVWSFRSWLWVFSEILESVCVLPQLLLLRQTTVP TVIDSFYLFALGSYRALYCLNWFLREFDDRKPDAVSVIFGLVQTALYGDFAWVYYTRQRVKLRAGGLVDADDMRR GWLLRRIFGKNVDAGDDEENAPSLGVHGDDARRTTRPKWGARGISVSADEGVLDTERHNRADAEGLDDAADPDAK MRDPDELARALDDDDDDDDAAPGASTASQIQGQGRGMPRDMKSGDEWRD* |
| Coding | >Ophcf2|02593 ATGACGGCTTGGAACATCTTCCGCATCCTGGGCGACTTGTCCCACGCTCTCTCCAAATGCATCCTCATCACAAGC ATGCACCGCAATCGCAGCGCCGAGGGCGTCTCTTTCATCACACAGGCGCTCTACGCCCTCGTCTTCTGCACCCGC TACCTCGACATCTTCATGGAGCGCTCGGTCTGGAACTTGCTCTTCAAAATCTTCTACATCCTATCCTCTTTCTAC ATCCTGGCCGTCATGCAATGGGTTCTCCCTCGATCTCGGGAGCGCGAGCTGTCTTGGAAACTGGGCGCCGCCGTC CTTGGCGGTTCGTTGTTCCTATCGCCCTTCATGATGCTCATGTTTGAGCGTGTATGGAGCTTCCGATCTTGGCTG TGGGTATTTTCCGAGATCCTCGAATCCGTCTGCGTCCTTCCACAGCTCCTACTTCTCCGGCAGACCACGGTTCCC ACCGTCATCGACTCCTTTTACCTCTTCGCACTAGGTTCCTACAGGGCCCTCTACTGCCTCAACTGGTTCCTTCGA GAGTTTGACGACCGCAAACCCGACGCCGTCTCCGTCATCTTTGGCCTCGTGCAGACGGCTCTTTACGGCGACTTT GCTTGGGTCTACTACACGCGCCAGAGGGTCAAGCTGCGTGCCGGCGGGCTCGTCGACGCCGACGACATGCGCCGA GGCTGGCTACTGCGTCGAATCTTTGGCAAAAATGTCGACGCTGGCGATGACGAAGAGAATGCGCCATCGTTGGGA GTCCATGGCGATGACGCCAGACGAACAACCCGGCCTAAATGGGGGGCGCGTGGAATTTCCGTGAGCGCCGATGAG GGCGTGCTCGATACCGAGCGACATAATCGTGCCGATGCCGAGGGCTTGGATGACGCTGCAGACCCAGACGCCAAG ATGCGAGATCCAGACGAGCTTGCCAGGGCGCTGGATGACGACGACGATGACGATGACGCCGCTCCCGGGGCTTCA ACGGCGTCGCAAATTCAGGGACAGGGACGGGGAATGCCACGCGATATGAAGAGCGGTGACGAATGGCGAGATTGA |
| Transcript | >Ophcf2|02593 ATGACGGCTTGGAACATCTTCCGCATCCTGGGCGACTTGTCCCACGCTCTCTCCAAATGCATCCTCATCACAAGC ATGCACCGCAATCGCAGCGCCGAGGGCGTCTCTTTCATCACACAGGCGCTCTACGCCCTCGTCTTCTGCACCCGC TACCTCGACATCTTCATGGAGCGCTCGGTCTGGAACTTGCTCTTCAAAATCTTCTACATCCTATCCTCTTTCTAC ATCCTGGCCGTCATGCAATGGGTTCTCCCTCGATCTCGGGAGCGCGAGCTGTCTTGGAAACTGGGCGCCGCCGTC CTTGGCGGTTCGTTGTTCCTATCGCCCTTCATGATGCTCATGTTTGAGCGTGTATGGAGCTTCCGATCTTGGCTG TGGGTATTTTCCGAGATCCTCGAATCCGTCTGCGTCCTTCCACAGCTCCTACTTCTCCGGCAGACCACGGTTCCC ACCGTCATCGACTCCTTTTACCTCTTCGCACTAGGTTCCTACAGGGCCCTCTACTGCCTCAACTGGTTCCTTCGA GAGTTTGACGACCGCAAACCCGACGCCGTCTCCGTCATCTTTGGCCTCGTGCAGACGGCTCTTTACGGCGACTTT GCTTGGGTCTACTACACGCGCCAGAGGGTCAAGCTGCGTGCCGGCGGGCTCGTCGACGCCGACGACATGCGCCGA GGCTGGCTACTGCGTCGAATCTTTGGCAAAAATGTCGACGCTGGCGATGACGAAGAGAATGCGCCATCGTTGGGA GTCCATGGCGATGACGCCAGACGAACAACCCGGCCTAAATGGGGGGCGCGTGGAATTTCCGTGAGCGCCGATGAG GGCGTGCTCGATACCGAGCGACATAATCGTGCCGATGCCGAGGGCTTGGATGACGCTGCAGACCCAGACGCCAAG ATGCGAGATCCAGACGAGCTTGCCAGGGCGCTGGATGACGACGACGATGACGATGACGCCGCTCCCGGGGCTTCA ACGGCGTCGCAAATTCAGGGACAGGGACGGGGAATGCCACGCGATATGAAGAGCGGTGACGAATGGCGAGATTGA |
| Gene | >Ophcf2|02593 ATGACGGCTTGGAACGTGCGTCGTCGCAATGTCTTTACGATGGCATCGCTGACGCATTCGTTATATTCCACAGAT CTTCCGCATCCTGGGCGACTTGTCCCACGCTCTCTCCAAATGCATCCTCATCACAAGCATGCACCGCAATCGCAG CGCCGAGGGCGTCTCTTTCATCACACAGGCGCTCTACGCCCTCGTCTTCTGCACCCGCTACCTCGACATCTTCAT GGAGCGCTCGGTCTGGAACTTGCTCTTCAAAATCTTCTACATCCTATCCTCTTTCTACATCCTGGCCGTCATGCA ATGGGTTCTCCCTCGATCTCGGGAGCGCGAGCTGTCTTGGAAACTGGGCGCCGCCGTCCTTGGCGGTTCGTTGTT CCTATCGCCCTTCATGATGCTCATGTTTGAGCGTGTATGGAGCTTCCGATCTGTGAGTCTACGTCCATATATCGT CTGTCCCGGCGCTGGCTGAAGTCGACAAAGTGGCTGTGGGTATTTTCCGAGATCCTCGAATCCGTCTGCGTCCTT CCACAGCTCCTACTTCTCCGGCAGACCACGGTTCCCACCGTCATCGACTCCTTTTACCTCTTCGCACTAGGTTCC TACAGGGCCCTCTACTGCCTCAACTGGTTCCTTCGAGAGTTTGACGACCGCAAACCCGACGCCGTCTCCGTCATC TTTGGCCTCGTGCAGACGGCTCTTTACGGCGACTTTGCTTGGGTCTACTACACGCGCCAGAGGGTCAAGCTGCGT GCCGGCGGGCTCGTCGACGCCGACGACATGCGCCGAGGCTGGCTACTGCGTCGAATCTTTGGCAAAAATGTCGAC GCTGGCGATGACGAAGAGAATGCGCCATCGTTGGGAGTCCATGGCGATGACGCCAGACGAACAACCCGGCCTAAA TGGGGGGCGCGTGGAATTTCCGTGAGCGCCGATGAGGGCGTGCTCGATACCGAGCGACATAATCGTGCCGATGCC GAGGGCTTGGATGACGCTGCAGACCCAGACGCCAAGATGCGAGATCCAGACGAGCTTGCCAGGGCGCTGGATGAC GACGACGATGACGATGACGCCGCTCCCGGGGCTTCAACGGCGTCGCAAATTCAGGGACAGGGACGGGGAATGCCA CGCGATATGAAGAGCGGTGACGAATGGCGAGATTGA |