Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|02592
Gene name
Locationscaffold_02:4156308..4156687
Strand-
Gene length (bp)379
Transcript length (bp)219
Coding sequence length (bp)219
Protein length (aa) 73

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06842 DUF1242 Protein of unknown function (DUF1242) 2.6E-15 10 44

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.5

Transmembrane Domains

Domain # Start End Length
1 7 29 22
2 49 71 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|02592
MSALFNIQSLLLVLLLLTCTSAYIHQIIPRILDSHKDGPLGILWKFARVGERMSPYVSLACVFMAVSMLVGY*
Coding >Ophcf2|02592
ATGTCAGCTCTCTTCAACATACAGTCGCTTTTGCTCGTGCTGCTCCTCCTCACTTGCACCTCGGCCTACATTCAC
CAAATTATCCCGCGGATACTCGACTCTCATAAGGATGGTCCCCTTGGCATATTATGGAAGTTTGCGAGGGTCGGC
GAGCGCATGAGCCCCTATGTCAGCCTGGCCTGCGTCTTTATGGCGGTTTCGATGCTCGTCGGCTACTGA
Transcript >Ophcf2|02592
ATGTCAGCTCTCTTCAACATACAGTCGCTTTTGCTCGTGCTGCTCCTCCTCACTTGCACCTCGGCCTACATTCAC
CAAATTATCCCGCGGATACTCGACTCTCATAAGGATGGTCCCCTTGGCATATTATGGAAGTTTGCGAGGGTCGGC
GAGCGCATGAGCCCCTATGTCAGCCTGGCCTGCGTCTTTATGGCGGTTTCGATGCTCGTCGGCTACTGA
Gene >Ophcf2|02592
ATGGTGAGTCTTGAATCCTGACTTCAAGTGGCGTTCCCGCTGACATGTCCTCAGTCAGCTCTCTTCAACATACAG
TCGCTTTTGCTCGTGCTGCTCCTCCTCACTTGCACCTCGGCCTACATTCACCAAATTATCCCGCGGATACTCGAC
TCTCATAAGGATGGGTGCGATTGTCTCTATCTCCGTTGGCGCAGTAGTCCTGTCTGACGGACTACTAGTCCCCTT
GGCATATTATGGAAGTTTGCGAGGGTCGGCGAGCGCATGAGCCCCTATGTCAGCCTGGCCTGCGTCTTTATGGCG
GTGCGCAGACATTACGTCCCGGTTGAGGGAGCGAAGCTAACGTCTGCCTGTGTAGGTTTCGATGCTCGTCGGCTA
CTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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