© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02575 |
| Gene name | |
| Location | scaffold_02:4125181..4126009 |
| Strand | + |
| Gene length (bp) | 828 |
| Transcript length (bp) | 828 |
| Coding sequence length (bp) | 828 |
| Protein length (aa) | 276 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17784 | Sulfotransfer_4 | Sulfotransferase domain | 2.8E-62 | 11 | 225 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 239 | 261 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 29.08 | 13.02 | 45.13 |
| Alive | In ants, during behavior modification | 8.14 | 2.26 | 14.02 |
| Dead | In ants, recently dead | 9.17 | 2.53 | 15.82 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.719776 | no |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02575 MDKAAKPRQIQVLALGLPRTGTYSMSQALLRLGYHRPFHGIDVGMNQKIWDKFDEATDASFPTVESYHGRPFTRA QWDEIFGESEAVTDLGALFAPQLIEAYPEAYVILAIRDFEPWMRSMNGLLGLMWSPFASFTVRFVDPLLGNTIGL KIRKLLLGFFEAKDVDEARRNAQRIYHRHHEQIRKMVAPDRLLEYRMGSGWEPICSFLNKPVPDDDFPWVNDSEA LAALFWRAQRSSFVAFTKFCLPWVGAICAAGTSFLLARRMHLFDGLPSIV* |
| Coding | >Ophcf2|02575 ATGGACAAAGCCGCGAAGCCGCGCCAGATCCAGGTGCTTGCACTTGGCCTCCCGAGAACTGGGACCTACTCCATG TCTCAAGCCCTTCTGCGGCTGGGCTATCATCGACCTTTTCACGGCATCGACGTCGGAATGAACCAAAAGATCTGG GACAAGTTCGACGAAGCAACCGATGCCTCCTTTCCCACTGTGGAATCTTATCATGGTCGGCCCTTCACCAGGGCT CAATGGGATGAGATATTCGGTGAAAGTGAGGCTGTGACCGACCTCGGCGCCCTCTTCGCACCGCAGCTCATCGAG GCCTACCCCGAGGCCTACGTCATACTCGCCATCCGCGACTTTGAGCCCTGGATGCGCAGCATGAATGGGCTATTG GGCCTCATGTGGAGCCCTTTCGCCAGTTTCACCGTACGGTTCGTCGACCCCTTACTGGGCAACACCATCGGCCTC AAGATCCGCAAGCTCTTGCTCGGTTTCTTCGAGGCGAAAGACGTGGATGAGGCGAGGCGAAACGCTCAACGCATC TACCATCGTCACCATGAGCAGATTCGCAAAATGGTGGCTCCGGATCGACTGCTTGAATACCGGATGGGCTCTGGC TGGGAACCCATCTGCTCCTTTCTCAATAAGCCCGTACCGGATGACGACTTTCCATGGGTCAATGACAGCGAAGCC CTGGCGGCACTGTTTTGGAGGGCACAGAGAAGTAGCTTCGTGGCCTTTACGAAGTTTTGCCTGCCATGGGTCGGA GCCATCTGCGCGGCCGGGACGTCGTTCTTGCTTGCCCGGAGGATGCATCTATTTGATGGTCTGCCATCTATAGTC TAG |
| Transcript | >Ophcf2|02575 ATGGACAAAGCCGCGAAGCCGCGCCAGATCCAGGTGCTTGCACTTGGCCTCCCGAGAACTGGGACCTACTCCATG TCTCAAGCCCTTCTGCGGCTGGGCTATCATCGACCTTTTCACGGCATCGACGTCGGAATGAACCAAAAGATCTGG GACAAGTTCGACGAAGCAACCGATGCCTCCTTTCCCACTGTGGAATCTTATCATGGTCGGCCCTTCACCAGGGCT CAATGGGATGAGATATTCGGTGAAAGTGAGGCTGTGACCGACCTCGGCGCCCTCTTCGCACCGCAGCTCATCGAG GCCTACCCCGAGGCCTACGTCATACTCGCCATCCGCGACTTTGAGCCCTGGATGCGCAGCATGAATGGGCTATTG GGCCTCATGTGGAGCCCTTTCGCCAGTTTCACCGTACGGTTCGTCGACCCCTTACTGGGCAACACCATCGGCCTC AAGATCCGCAAGCTCTTGCTCGGTTTCTTCGAGGCGAAAGACGTGGATGAGGCGAGGCGAAACGCTCAACGCATC TACCATCGTCACCATGAGCAGATTCGCAAAATGGTGGCTCCGGATCGACTGCTTGAATACCGGATGGGCTCTGGC TGGGAACCCATCTGCTCCTTTCTCAATAAGCCCGTACCGGATGACGACTTTCCATGGGTCAATGACAGCGAAGCC CTGGCGGCACTGTTTTGGAGGGCACAGAGAAGTAGCTTCGTGGCCTTTACGAAGTTTTGCCTGCCATGGGTCGGA GCCATCTGCGCGGCCGGGACGTCGTTCTTGCTTGCCCGGAGGATGCATCTATTTGATGGTCTGCCATCTATAGTC TAG |
| Gene | >Ophcf2|02575 ATGGACAAAGCCGCGAAGCCGCGCCAGATCCAGGTGCTTGCACTTGGCCTCCCGAGAACTGGGACCTACTCCATG TCTCAAGCCCTTCTGCGGCTGGGCTATCATCGACCTTTTCACGGCATCGACGTCGGAATGAACCAAAAGATCTGG GACAAGTTCGACGAAGCAACCGATGCCTCCTTTCCCACTGTGGAATCTTATCATGGTCGGCCCTTCACCAGGGCT CAATGGGATGAGATATTCGGTGAAAGTGAGGCTGTGACCGACCTCGGCGCCCTCTTCGCACCGCAGCTCATCGAG GCCTACCCCGAGGCCTACGTCATACTCGCCATCCGCGACTTTGAGCCCTGGATGCGCAGCATGAATGGGCTATTG GGCCTCATGTGGAGCCCTTTCGCCAGTTTCACCGTACGGTTCGTCGACCCCTTACTGGGCAACACCATCGGCCTC AAGATCCGCAAGCTCTTGCTCGGTTTCTTCGAGGCGAAAGACGTGGATGAGGCGAGGCGAAACGCTCAACGCATC TACCATCGTCACCATGAGCAGATTCGCAAAATGGTGGCTCCGGATCGACTGCTTGAATACCGGATGGGCTCTGGC TGGGAACCCATCTGCTCCTTTCTCAATAAGCCCGTACCGGATGACGACTTTCCATGGGTCAATGACAGCGAAGCC CTGGCGGCACTGTTTTGGAGGGCACAGAGAAGTAGCTTCGTGGCCTTTACGAAGTTTTGCCTGCCATGGGTCGGA GCCATCTGCGCGGCCGGGACGTCGTTCTTGCTTGCCCGGAGGATGCATCTATTTGATGGTCTGCCATCTATAGTC TAG |