© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02516 |
| Gene name | |
| Location | scaffold_02:3970365..3971245 |
| Strand | + |
| Gene length (bp) | 880 |
| Transcript length (bp) | 756 |
| Coding sequence length (bp) | 756 |
| Protein length (aa) | 252 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 69 | 91 | 22 |
| 2 | 101 | 123 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 26.81 | 11.45 | 42.16 |
| Alive | In ants, during behavior modification | 27.00 | 11.41 | 42.60 |
| Dead | In ants, recently dead | 25.24 | 10.58 | 39.90 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.983423 | no |
| Alive | Dead | 0.805678 | no |
| Dead | Fungus | 0.856249 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02516 MPSSPGRVAIPLERVPYEVSPPMRMRVVDDPESGSPGRARPNDVGEQGKARYCLCIPTTKSPRLRAQMATSIVSG IFFIAVLAVYVGLSVTGSIRQSELTIIVILIILTSGIFFCFCIIRLWLALHRNDGRSDGRRTVTPELPHHYLVPP KPIPVVLAQDEEAVGIRGEAVTSKPPAYGRWLETVRVDPNRLFWQRNEDADSRPESGQGPRPPSYASEDGVDYVL EAQPRSVAPPSITEFHQSPDLGPLRS* |
| Coding | >Ophcf2|02516 ATGCCATCGTCTCCGGGTCGGGTGGCCATACCCCTGGAGAGGGTCCCATATGAAGTCAGCCCTCCGATGCGAATG AGGGTCGTCGATGACCCTGAGTCGGGCTCACCTGGCCGGGCTCGGCCCAACGACGTTGGTGAACAAGGCAAGGCG CGATATTGTCTCTGCATTCCTACGACCAAGTCGCCGCGGTTGCGGGCGCAGATGGCTACGTCCATCGTCTCGGGC ATCTTCTTCATCGCCGTTCTGGCTGTTTACGTTGGCCTCAGCGTGACGGGTAGCATCCGTCAGAGCGAGCTGACC ATCATCGTCATCCTCATCATCCTCACCTCGGGCATCTTCTTCTGCTTCTGTATCATACGACTATGGCTGGCTCTT CATCGCAACGACGGACGTAGCGATGGACGGCGAACCGTCACGCCGGAGCTGCCCCATCACTATCTAGTGCCTCCG AAGCCCATACCCGTCGTACTGGCGCAAGACGAGGAGGCGGTCGGTATCCGGGGCGAGGCGGTAACTTCGAAACCG CCTGCTTACGGCCGCTGGTTGGAGACGGTGAGAGTCGACCCAAACCGGCTATTCTGGCAGCGCAACGAGGATGCC GATTCGAGACCGGAGTCTGGCCAAGGGCCGCGCCCGCCTTCTTATGCTTCGGAGGATGGAGTCGACTATGTGCTG GAAGCGCAGCCGCGGTCGGTGGCGCCGCCGTCTATCACGGAGTTTCATCAGTCTCCGGACTTGGGTCCTTTGCGC AGTTGA |
| Transcript | >Ophcf2|02516 ATGCCATCGTCTCCGGGTCGGGTGGCCATACCCCTGGAGAGGGTCCCATATGAAGTCAGCCCTCCGATGCGAATG AGGGTCGTCGATGACCCTGAGTCGGGCTCACCTGGCCGGGCTCGGCCCAACGACGTTGGTGAACAAGGCAAGGCG CGATATTGTCTCTGCATTCCTACGACCAAGTCGCCGCGGTTGCGGGCGCAGATGGCTACGTCCATCGTCTCGGGC ATCTTCTTCATCGCCGTTCTGGCTGTTTACGTTGGCCTCAGCGTGACGGGTAGCATCCGTCAGAGCGAGCTGACC ATCATCGTCATCCTCATCATCCTCACCTCGGGCATCTTCTTCTGCTTCTGTATCATACGACTATGGCTGGCTCTT CATCGCAACGACGGACGTAGCGATGGACGGCGAACCGTCACGCCGGAGCTGCCCCATCACTATCTAGTGCCTCCG AAGCCCATACCCGTCGTACTGGCGCAAGACGAGGAGGCGGTCGGTATCCGGGGCGAGGCGGTAACTTCGAAACCG CCTGCTTACGGCCGCTGGTTGGAGACGGTGAGAGTCGACCCAAACCGGCTATTCTGGCAGCGCAACGAGGATGCC GATTCGAGACCGGAGTCTGGCCAAGGGCCGCGCCCGCCTTCTTATGCTTCGGAGGATGGAGTCGACTATGTGCTG GAAGCGCAGCCGCGGTCGGTGGCGCCGCCGTCTATCACGGAGTTTCATCAGTCTCCGGACTTGGGTCCTTTGCGC AGTTGA |
| Gene | >Ophcf2|02516 ATGCCATCGTCTCCGGGTCGGGTGGCCATACCCCTGGAGAGGGTCCCATATGAAGTCAGCCCTCCGATGCGAATG AGGGTCGTCGATGACCCTGAGTCGGGCTCACCTGGCCGGGCTCGGCCCAACGACGTTGGTGAACAAGGCAAGGCG CGATATTGTCTCTGCATTCCTACGACCAAGTCGCCGCGGTTGCGGGCGCAGATGGCTACGTCCATCGTCTCGGGC ATCTTCTTCATCGCCGTTCTGGCTGTTTGTACGTCTCACTGAAAAAACATCGATGGCTGTAACTGTTGTCAGCTA ACCGCGGACGCAGACGTTGGCCTCAGCGTGACGGGTAGCATCCGTCAGAGCGAGCTGACCATCATCGTCATCCTC ATCATCCTCACCTCGGGCATCTTCTTCTGCTTCTGTATCATACGACTATGGCTGGCTCTTCATCGCAACGACGGA CGTAGCGATGGACGGCGAACCGTCACGCCGGAGCTGCCCCATCACTATCTAGTGCCTCCGAAGCCCATACCCGTC GTACTGGCGCAAGACGAGGAGGCGGTCGGTATCCGGGGCGAGGCGGTAACTTCGAAACCGCCTGCTTACGGCCGC TGGTTGGAGACGGTGGTGAGTTTTGCTCTTTTGTTATCCCTGGACCCCATCACACGTTTGAGTGCTGACGCCGTG TCAGAGAGTCGACCCAAACCGGCTATTCTGGCAGCGCAACGAGGATGCCGATTCGAGACCGGAGTCTGGCCAAGG GCCGCGCCCGCCTTCTTATGCTTCGGAGGATGGAGTCGACTATGTGCTGGAAGCGCAGCCGCGGTCGGTGGCGCC GCCGTCTATCACGGAGTTTCATCAGTCTCCGGACTTGGGTCCTTTGCGCAGTTGA |