© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02506 |
| Gene name | |
| Location | scaffold_02:3941493..3943112 |
| Strand | + |
| Gene length (bp) | 1619 |
| Transcript length (bp) | 1341 |
| Coding sequence length (bp) | 1341 |
| Protein length (aa) | 447 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02116 | STE2 | Fungal pheromone mating factor STE2 GPCR | 1.8E-74 | 71 | 354 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0007186 | G protein-coupled receptor signaling pathway | Yes |
| GO:0004932 | mating-type factor pheromone receptor activity | Yes |
| GO:0004930 | G protein-coupled receptor activity | No |
| GO:0038023 | signaling receptor activity | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0008528 | G protein-coupled peptide receptor activity | No |
| GO:0060089 | molecular transducer activity | No |
| GO:0005575 | cellular_component | No |
| GO:0004888 | transmembrane signaling receptor activity | No |
| GO:0003674 | molecular_function | No |
| GO:0007165 | signal transduction | No |
| GO:0016503 | pheromone receptor activity | No |
| GO:0065007 | biological regulation | No |
| GO:0008150 | biological_process | No |
| GO:0001653 | peptide receptor activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 108 | 130 | 22 |
| 2 | 143 | 165 | 22 |
| 3 | 180 | 199 | 19 |
| 4 | 220 | 242 | 22 |
| 5 | 257 | 279 | 22 |
| 6 | 300 | 322 | 22 |
| 7 | 337 | 359 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 2.36 | 0.44 | 4.27 |
| Alive | In ants, during behavior modification | 0.16 | 0.00 | 0.44 |
| Dead | In ants, recently dead | 0.24 | 0.00 | 0.60 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.006027 | yes |
| Alive | Dead | 1.000000 | no |
| Dead | Fungus | 0.003275 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02506 MGDFNRVADFDCLVGQSIFGFCGGSLPSSSSNLQVLDKASPQRRQKPPTSSMKPSGASFLGEYPPKPEPGFDPAD QTLAFFARDGQTVIGVPMTTIDDFNAESISMGITSGAEIGACLIILAALIVLTPLAKLRRPTAACQIMALILCLT RAAFEISDLFTPIFHFYVYWAGDYTGVPRGYIYRGIAGHVVTMLVNMAVEMTLMNQAWTMVSLFSARLRLWLTLV SALVVLVVVGLRIAFAVMLSQVDVVSGPRSSLVWIMQATLISNTVSIFWFCALFNSKLVLHIIANRGILSSSSRK LSSMEVLVMTNGVLMVIPVIFAGLEYGSFRNFEPARLTIATVAVILPLGTLAAQRISALTSSKASDREADSTGSK QSGTGPCNLRKQSMSSSSASPFSKCERGRGSVRAGATRVEDPYDLELRRIDSTGFSGILIDQKLEQRYESV* |
| Coding | >Ophcf2|02506 ATGGGCGACTTCAATCGGGTAGCGGACTTTGATTGCCTGGTAGGACAGTCGATTTTCGGCTTCTGTGGCGGGAGC CTTCCGTCCTCATCTTCCAACCTTCAAGTCCTCGATAAAGCCTCACCACAGCGACGGCAAAAACCGCCAACATCA AGCATGAAGCCCTCCGGAGCCTCTTTTCTCGGCGAATACCCTCCCAAGCCCGAGCCAGGTTTCGACCCAGCAGAC CAGACGCTGGCCTTTTTCGCCCGAGACGGCCAGACGGTCATCGGGGTGCCCATGACCACCATCGACGACTTCAAC GCAGAGTCCATCAGCATGGGCATCACCAGCGGCGCCGAGATAGGAGCCTGCCTCATCATTCTCGCCGCGCTTATC GTCCTCACGCCCCTTGCCAAGCTGCGGCGACCGACGGCCGCGTGCCAGATAATGGCTCTTATCCTTTGCCTTACC CGCGCCGCCTTTGAGATTTCAGACCTTTTCACGCCCATCTTTCACTTTTACGTCTACTGGGCCGGCGATTATACC GGTGTTCCGCGCGGATACATCTACAGGGGCATCGCCGGCCACGTCGTCACCATGCTCGTCAACATGGCCGTCGAG ATGACGCTGATGAACCAGGCCTGGACCATGGTTTCGCTCTTTTCGGCCAGGCTGAGGTTGTGGCTGACGCTCGTC TCGGCTCTCGTCGTCTTGGTGGTTGTCGGGCTGCGCATTGCTTTCGCCGTCATGCTGAGCCAAGTCGATGTTGTG TCTGGTCCGAGGTCGTCTTTGGTCTGGATAATGCAGGCTACCCTCATCTCCAACACCGTTTCCATCTTCTGGTTC TGCGCCCTTTTCAACTCCAAGCTGGTTCTTCACATCATTGCCAACCGCGGTATCCTGTCGTCTTCGAGCCGCAAG CTGAGCTCCATGGAAGTTCTCGTCATGACCAACGGAGTTCTCATGGTCATCCCAGTCATCTTCGCCGGCCTCGAA TACGGCAGCTTCCGCAACTTCGAACCAGCCCGACTGACGATAGCCACCGTCGCCGTCATTCTTCCCCTGGGAACT CTCGCCGCCCAGCGGATCAGCGCGCTAACCAGCAGCAAGGCCTCAGACCGCGAAGCCGATTCCACCGGGAGCAAG CAGTCCGGAACCGGCCCCTGCAACCTCAGGAAGCAGAGCATGTCCAGCAGCTCGGCTTCGCCCTTTTCCAAGTGC GAGCGCGGTAGGGGCAGTGTCCGTGCCGGCGCAACGCGTGTCGAGGATCCGTATGATCTAGAGCTTCGCCGCATT GATTCTACCGGCTTTTCTGGTATTCTCATCGACCAGAAGCTGGAGCAGCGGTACGAGAGCGTCTAG |
| Transcript | >Ophcf2|02506 ATGGGCGACTTCAATCGGGTAGCGGACTTTGATTGCCTGGTAGGACAGTCGATTTTCGGCTTCTGTGGCGGGAGC CTTCCGTCCTCATCTTCCAACCTTCAAGTCCTCGATAAAGCCTCACCACAGCGACGGCAAAAACCGCCAACATCA AGCATGAAGCCCTCCGGAGCCTCTTTTCTCGGCGAATACCCTCCCAAGCCCGAGCCAGGTTTCGACCCAGCAGAC CAGACGCTGGCCTTTTTCGCCCGAGACGGCCAGACGGTCATCGGGGTGCCCATGACCACCATCGACGACTTCAAC GCAGAGTCCATCAGCATGGGCATCACCAGCGGCGCCGAGATAGGAGCCTGCCTCATCATTCTCGCCGCGCTTATC GTCCTCACGCCCCTTGCCAAGCTGCGGCGACCGACGGCCGCGTGCCAGATAATGGCTCTTATCCTTTGCCTTACC CGCGCCGCCTTTGAGATTTCAGACCTTTTCACGCCCATCTTTCACTTTTACGTCTACTGGGCCGGCGATTATACC GGTGTTCCGCGCGGATACATCTACAGGGGCATCGCCGGCCACGTCGTCACCATGCTCGTCAACATGGCCGTCGAG ATGACGCTGATGAACCAGGCCTGGACCATGGTTTCGCTCTTTTCGGCCAGGCTGAGGTTGTGGCTGACGCTCGTC TCGGCTCTCGTCGTCTTGGTGGTTGTCGGGCTGCGCATTGCTTTCGCCGTCATGCTGAGCCAAGTCGATGTTGTG TCTGGTCCGAGGTCGTCTTTGGTCTGGATAATGCAGGCTACCCTCATCTCCAACACCGTTTCCATCTTCTGGTTC TGCGCCCTTTTCAACTCCAAGCTGGTTCTTCACATCATTGCCAACCGCGGTATCCTGTCGTCTTCGAGCCGCAAG CTGAGCTCCATGGAAGTTCTCGTCATGACCAACGGAGTTCTCATGGTCATCCCAGTCATCTTCGCCGGCCTCGAA TACGGCAGCTTCCGCAACTTCGAACCAGCCCGACTGACGATAGCCACCGTCGCCGTCATTCTTCCCCTGGGAACT CTCGCCGCCCAGCGGATCAGCGCGCTAACCAGCAGCAAGGCCTCAGACCGCGAAGCCGATTCCACCGGGAGCAAG CAGTCCGGAACCGGCCCCTGCAACCTCAGGAAGCAGAGCATGTCCAGCAGCTCGGCTTCGCCCTTTTCCAAGTGC GAGCGCGGTAGGGGCAGTGTCCGTGCCGGCGCAACGCGTGTCGAGGATCCGTATGATCTAGAGCTTCGCCGCATT GATTCTACCGGCTTTTCTGGTATTCTCATCGACCAGAAGCTGGAGCAGCGGTACGAGAGCGTCTAG |
| Gene | >Ophcf2|02506 ATGGGCGACTTCAATCGGGTAGCGGACTTTGATTGCCTGGTAGGACAGTCGATTTTCGGCTTCTGTGGCGGGAGG TTAGTGTTGTCCTCTTCTACTTGTTTTCTGCATGAGACGTATGACTTTCTCTGTGGTTTTCTTGTCTCTACGTCT GTGTATGAGCGTGCAAAGTTCAATGCCAGGTGCTTCCTATTATCCCCCTTCCCCCCCATTCCTCTGCCTCTCCCA CCTCCTCACTCCCCTTTTCGAAACCAAAAACGCTAATCTCTCGATTCCAAAAATCTCCCGCTCTGCAGCCTTCCG TCCTCATCTTCCAACCTTCAAGTCCTCGATAAAGCCTCACCACAGCGACGGCAAAAACCGCCAACATCAAGCATG AAGCCCTCCGGAGCCTCTTTTCTCGGCGAATACCCTCCCAAGCCCGAGCCAGGTTTCGACCCAGCAGACCAGACG CTGGCCTTTTTCGCCCGAGACGGCCAGACGGTCATCGGGGTGCCCATGACCACCATCGACGACTTCAACGCAGAG TCCATCAGCATGGGCATCACCAGCGGCGCCGAGATAGGAGCCTGCCTCATCATTCTCGCCGCGCTTATCGTCCTC ACGCCCCTTGCCAAGCTGCGGCGACCGACGGCCGCGTGCCAGATAATGGCTCTTATCCTTTGCCTTACCCGCGCC GCCTTTGAGATTTCAGACCTTTTCACGCCCATCTTTCACTTTTACGTCTACTGGGCCGGCGATTATACCGGTGTT CCGCGCGGATACATCTACAGGGGCATCGCCGGCCACGTCGTCACCATGCTCGTCAACATGGCCGTCGAGATGACG CTGATGAACCAGGCCTGGACCATGGTTTCGCTCTTTTCGGCCAGGCTGAGGTTGTGGCTGACGCTCGTCTCGGCT CTCGTCGTCTTGGTGGTTGTCGGGCTGCGCATTGCTTTCGCCGTCATGCTGAGCCAAGTCGATGTTGTGTCTGGT CCGAGGTCGTCTTTGGTCTGGATAATGCAGGCTACCCTCATCTCCAACACCGTTTCCATCTTCTGGTTCTGCGCC CTTTTCAACTCCAAGCTGGTTCTTCACATCATTGCCAACCGCGGTATCCTGTCGTCTTCGAGCCGCAAGCTGAGC TCCATGGAAGTTCTCGTCATGACCAACGGAGTTCTCATGGTCATCCCAGGTGAGTCCCCAATCTCCTTTGATATC TCGTTGAAATCTAGTTACTTATGAATCTCTCAGTCATCTTCGCCGGCCTCGAATACGGCAGCTTCCGCAACTTCG AACCAGCCCGACTGACGATAGCCACCGTCGCCGTCATTCTTCCCCTGGGAACTCTCGCCGCCCAGCGGATCAGCG CGCTAACCAGCAGCAAGGCCTCAGACCGCGAAGCCGATTCCACCGGGAGCAAGCAGTCCGGAACCGGCCCCTGCA ACCTCAGGAAGCAGAGCATGTCCAGCAGCTCGGCTTCGCCCTTTTCCAAGTGCGAGCGCGGTAGGGGCAGTGTCC GTGCCGGCGCAACGCGTGTCGAGGATCCGTATGATCTAGAGCTTCGCCGCATTGATTCTACCGGCTTTTCTGGTA TTCTCATCGACCAGAAGCTGGAGCAGCGGTACGAGAGCGTCTAG |