© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|02472 |
| Gene name | |
| Location | scaffold_02:3836886..3838731 |
| Strand | - |
| Gene length (bp) | 1845 |
| Transcript length (bp) | 1647 |
| Coding sequence length (bp) | 1647 |
| Protein length (aa) | 549 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.4E-36 | 54 | 448 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 57 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 45 | 67 | 22 |
| 2 | 82 | 99 | 17 |
| 3 | 106 | 128 | 22 |
| 4 | 143 | 161 | 18 |
| 5 | 168 | 190 | 22 |
| 6 | 200 | 219 | 19 |
| 7 | 236 | 253 | 17 |
| 8 | 268 | 290 | 22 |
| 9 | 311 | 333 | 22 |
| 10 | 343 | 365 | 22 |
| 11 | 370 | 389 | 19 |
| 12 | 399 | 421 | 22 |
| 13 | 433 | 452 | 19 |
| 14 | 472 | 494 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 20.67 | 10.47 | 30.88 |
| Alive | In ants, during behavior modification | 161.40 | 23.37 | 299.44 |
| Dead | In ants, recently dead | 50.33 | 28.02 | 72.65 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.000238 | yes |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02472 MMQSTMESVIPEREASEDLPKTIDVERLGRQRPVEFSSTWLEVAFVISMLGALSMADFIIGGFQVVLPALIKPFD IPSGSQTWPSSVLTLVAGAFLFPLGRLSDMYGGYYIFNGGLVWFTLWTIAAGFTGSFSLLVLCRAMQGLGAAAFL PAGISLLGRIYRPGPRKNLVFAVYGALAPLGFFLGIIIGGLSQDLLSWRWYFWMGGIITGVCCVGTILTSPRDYA SARKMKVRMDWWGVSTMVPGLMLFIYAVTESPNAPRGWASPQIVTTLVLGVLFLIAAVYVEGWVATSPLIPGDIF RVKYMKRMLLCLVLSWGVFSMYSFYSNFYIQLILGRSALTTAVWYSPWAVGGLVLSIMSGFILHILPGRVLLIMC GMSKVLAVLFFALMPENPNYWAWVFPAMLCEAACVDVLWTVSNVFLTTSLPRHRQGLAGALISVTLFLGGALFLA VADVVKEQLRTAGFDLKKQYKGIFWIGVGFAGISLCICCFIRLGQAGCALTLEERQEVALDDIDDEKDQTRREVR TSESDTETVVGVEAGADTDKKKA* |
| Coding | >Ophcf2|02472 ATGATGCAGTCCACCATGGAGTCTGTTATCCCGGAGCGAGAGGCCTCGGAAGACCTGCCCAAGACGATTGACGTC GAGAGGCTTGGTCGCCAACGGCCAGTCGAGTTCTCGTCGACATGGCTCGAGGTTGCCTTTGTCATTTCCATGCTT GGGGCCCTCTCTATGGCTGACTTTATCATTGGCGGTTTTCAAGTTGTGCTGCCCGCCCTGATCAAGCCATTTGAT ATCCCTTCGGGCTCCCAGACCTGGCCCTCGAGCGTCCTGACCCTTGTCGCTGGTGCATTTCTCTTTCCGCTCGGC CGACTGAGTGACATGTACGGCGGCTACTACATCTTCAACGGCGGCCTGGTATGGTTTACCCTCTGGACCATCGCC GCTGGCTTCACCGGCAGCTTCTCCCTGCTCGTGCTCTGCCGCGCCATGCAGGGCCTGGGCGCCGCCGCCTTTCTC CCCGCCGGCATCTCCCTGTTGGGTCGCATCTACCGTCCCGGTCCCCGCAAGAACCTCGTCTTCGCCGTCTACGGC GCCCTCGCCCCCCTGGGCTTCTTCCTCGGCATCATCATCGGCGGCCTGTCCCAGGACCTGCTGTCATGGAGGTGG TACTTTTGGATGGGAGGCATCATCACCGGTGTCTGCTGTGTAGGCACCATCCTCACCTCTCCCCGTGACTACGCC TCAGCCCGCAAGATGAAGGTCCGCATGGACTGGTGGGGAGTGTCGACCATGGTTCCGGGCCTGATGCTCTTCATC TACGCCGTCACCGAGAGCCCCAACGCGCCCAGGGGATGGGCCTCGCCTCAGATCGTCACCACGTTGGTTCTCGGC GTCTTGTTCCTCATCGCCGCCGTCTATGTAGAGGGCTGGGTCGCCACGTCGCCACTGATACCGGGCGACATCTTC CGCGTCAAGTACATGAAGAGGATGCTTCTCTGCCTCGTACTTTCATGGGGCGTCTTTTCCATGTACTCGTTTTAC TCCAATTTCTATATTCAGCTGATTCTGGGTCGCTCCGCTCTCACCACGGCCGTCTGGTACAGCCCCTGGGCTGTC GGTGGACTCGTCTTGTCCATCATGAGCGGCTTCATCCTGCACATCCTTCCAGGACGCGTGCTGCTCATCATGTGC GGCATGTCCAAGGTGCTGGCCGTCTTATTCTTCGCCCTGATGCCAGAAAACCCCAACTACTGGGCATGGGTGTTT CCGGCCATGCTGTGCGAGGCGGCATGCGTCGACGTGCTGTGGACAGTGAGCAACGTCTTCCTCACGACCAGCCTG CCGCGCCATCGTCAGGGACTGGCGGGCGCCCTCATCAGCGTAACGCTGTTCCTTGGCGGCGCCCTGTTCCTCGCC GTGGCCGACGTGGTCAAGGAGCAGCTCCGGACGGCGGGCTTCGACCTCAAGAAGCAGTACAAGGGCATCTTCTGG ATCGGCGTGGGCTTCGCCGGCATCTCTCTATGCATCTGCTGCTTCATCCGGCTTGGCCAGGCCGGCTGCGCGCTG ACTCTGGAGGAGAGGCAGGAGGTCGCCCTGGATGATATCGACGACGAAAAGGACCAGACCCGGCGGGAGGTCCGG ACAAGCGAGTCCGACACCGAGACGGTCGTCGGCGTCGAGGCCGGGGCCGACACTGACAAGAAGAAGGCTTGA |
| Transcript | >Ophcf2|02472 ATGATGCAGTCCACCATGGAGTCTGTTATCCCGGAGCGAGAGGCCTCGGAAGACCTGCCCAAGACGATTGACGTC GAGAGGCTTGGTCGCCAACGGCCAGTCGAGTTCTCGTCGACATGGCTCGAGGTTGCCTTTGTCATTTCCATGCTT GGGGCCCTCTCTATGGCTGACTTTATCATTGGCGGTTTTCAAGTTGTGCTGCCCGCCCTGATCAAGCCATTTGAT ATCCCTTCGGGCTCCCAGACCTGGCCCTCGAGCGTCCTGACCCTTGTCGCTGGTGCATTTCTCTTTCCGCTCGGC CGACTGAGTGACATGTACGGCGGCTACTACATCTTCAACGGCGGCCTGGTATGGTTTACCCTCTGGACCATCGCC GCTGGCTTCACCGGCAGCTTCTCCCTGCTCGTGCTCTGCCGCGCCATGCAGGGCCTGGGCGCCGCCGCCTTTCTC CCCGCCGGCATCTCCCTGTTGGGTCGCATCTACCGTCCCGGTCCCCGCAAGAACCTCGTCTTCGCCGTCTACGGC GCCCTCGCCCCCCTGGGCTTCTTCCTCGGCATCATCATCGGCGGCCTGTCCCAGGACCTGCTGTCATGGAGGTGG TACTTTTGGATGGGAGGCATCATCACCGGTGTCTGCTGTGTAGGCACCATCCTCACCTCTCCCCGTGACTACGCC TCAGCCCGCAAGATGAAGGTCCGCATGGACTGGTGGGGAGTGTCGACCATGGTTCCGGGCCTGATGCTCTTCATC TACGCCGTCACCGAGAGCCCCAACGCGCCCAGGGGATGGGCCTCGCCTCAGATCGTCACCACGTTGGTTCTCGGC GTCTTGTTCCTCATCGCCGCCGTCTATGTAGAGGGCTGGGTCGCCACGTCGCCACTGATACCGGGCGACATCTTC CGCGTCAAGTACATGAAGAGGATGCTTCTCTGCCTCGTACTTTCATGGGGCGTCTTTTCCATGTACTCGTTTTAC TCCAATTTCTATATTCAGCTGATTCTGGGTCGCTCCGCTCTCACCACGGCCGTCTGGTACAGCCCCTGGGCTGTC GGTGGACTCGTCTTGTCCATCATGAGCGGCTTCATCCTGCACATCCTTCCAGGACGCGTGCTGCTCATCATGTGC GGCATGTCCAAGGTGCTGGCCGTCTTATTCTTCGCCCTGATGCCAGAAAACCCCAACTACTGGGCATGGGTGTTT CCGGCCATGCTGTGCGAGGCGGCATGCGTCGACGTGCTGTGGACAGTGAGCAACGTCTTCCTCACGACCAGCCTG CCGCGCCATCGTCAGGGACTGGCGGGCGCCCTCATCAGCGTAACGCTGTTCCTTGGCGGCGCCCTGTTCCTCGCC GTGGCCGACGTGGTCAAGGAGCAGCTCCGGACGGCGGGCTTCGACCTCAAGAAGCAGTACAAGGGCATCTTCTGG ATCGGCGTGGGCTTCGCCGGCATCTCTCTATGCATCTGCTGCTTCATCCGGCTTGGCCAGGCCGGCTGCGCGCTG ACTCTGGAGGAGAGGCAGGAGGTCGCCCTGGATGATATCGACGACGAAAAGGACCAGACCCGGCGGGAGGTCCGG ACAAGCGAGTCCGACACCGAGACGGTCGTCGGCGTCGAGGCCGGGGCCGACACTGACAAGAAGAAGGCTTGA |
| Gene | >Ophcf2|02472 ATGATGCAGTCCACCATGGAGTCTGTTATCCCGGAGCGAGAGGCCTCGGAAGACCTGCCCAAGACGATTGACGTC GAGAGGCTTGGTCGCCAACGGCCAGTCGAGTTCTCGTCGACATGGCTCGAGGTTGCCTTTGTCATTTCCATGCTT GGGGCCCTCTCTATGGCTGTGGGTGCCTTGTACATACGCTGCTTCTTGAACGCTCGCCAACTTTCACTCTCACAC ACTCTCTCCGACTCCCTCGTGAAGATGGAGCGGCTTGCTGATCCGCACCGCTCACGCAGGACTTTATCATTGGCG GTTTTCAAGTTGTGCTGCCCGCCCTGATCAAGCCATTTGATATCCCTTCGGGCTCCCAGACCTGGCCCTCGAGCG TCCTGACCCTTGTCGCTGGTGCATTTCTCTTTCCGCTCGGCCGACTGAGTGACATGTACGGCGGCTACTACATCT TCAACGGCGGCCTGGTATGGTTTACCCTCTGGACCATCGCCGCTGGCTTCACCGGCAGCTTCTCCCTGCTCGTGC TCTGCCGCGCCATGCAGGGCCTGGGCGCCGCCGCCTTTCTCCCCGCCGGCATCTCCCTGTTGGGTCGCATCTACC GTCCCGGTCCCCGCAAGAACCTCGTCTTCGCCGTCTACGGCGCCCTCGCCCCCCTGGGCTTCTTCCTCGGCATCA TCATCGGCGGCCTGTCCCAGGACCTGCTGTCATGGAGGTGGTACTTTTGGATGGGAGGCATCATCACCGGTGTCT GCTGTGTAGGCACCATCCTCACCTCTCCCCGTGACTACGCCTCAGCCCGCAAGATGAAGGTCCGCATGGACTGGT GGGGAGTGTCGACCATGGTTCCGGGCCTGATGCTCTTCATCTACGCCGTCACCGAGAGCCCCAACGCGCCCAGGG GATGGGCCTCGCCTCAGATCGTCACCACGTTGGTTCTCGGCGTCTTGTTCCTCATCGCCGCCGTCTATGTAGAGG GCTGGGTCGCCACGTCGCCACTGATACCGGGCGACATCTTCCGCGTCAAGTACATGAAGAGGATGCTTCTCTGCC TCGTACTTTCATGGGGCGTCTTTTCCATGTACTCGTTTTACTCCAATTTCTAGTGAGTGCCGGAAGAGACAGAGA GCGAGACACCAAGAGAGAGGCGAGTTGAAAGACAACGAGGCTGACTTTGACACTATCAGTATTCAGCTGATTCTG GGTCGCTCCGCTCTCACCACGGCCGTCTGGTACAGCCCCTGGGCTGTCGGTGGACTCGTCTTGTCCATCATGAGC GGCTTCATCCTGCACATCCTTCCAGGACGCGTGCTGCTCATCATGTGCGGCATGTCCAAGGTGCTGGCCGTCTTA TTCTTCGCCCTGATGCCAGAAAACCCCAACTACTGGGCATGGGTGTTTCCGGCCATGCTGTGCGAGGCGGCATGC GTCGACGTGCTGTGGACAGTGAGCAACGTCTTCCTCACGACCAGCCTGCCGCGCCATCGTCAGGGACTGGCGGGC GCCCTCATCAGCGTAACGCTGTTCCTTGGCGGCGCCCTGTTCCTCGCCGTGGCCGACGTGGTCAAGGAGCAGCTC CGGACGGCGGGCTTCGACCTCAAGAAGCAGTACAAGGGCATCTTCTGGATCGGCGTGGGCTTCGCCGGCATCTCT CTATGCATCTGCTGCTTCATCCGGCTTGGCCAGGCCGGCTGCGCGCTGACTCTGGAGGAGAGGCAGGAGGTCGCC CTGGATGATATCGACGACGAAAAGGACCAGACCCGGCGGGAGGTCCGGACAAGCGAGTCCGACACCGAGACGGTC GTCGGCGTCGAGGCCGGGGCCGACACTGACAAGAAGAAGGCTTGA |