© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|02438 |
| Gene name | |
| Location | scaffold_02:3744671..3745385 |
| Strand | - |
| Gene length (bp) | 714 |
| Transcript length (bp) | 648 |
| Coding sequence length (bp) | 648 |
| Protein length (aa) | 216 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF20238 | DUF6595 | Family of unknown function (DUF6595) | 1.1E-35 | 20 | 159 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 2 | 24 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 9012.17 | 2335.07 | 15689.30 |
| Alive | In ants, during behavior modification | 1298.25 | 464.93 | 2131.58 |
| Dead | In ants, recently dead | 1213.20 | 552.43 | 1873.97 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.805778 | no |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|02438 MVAGFVVVAFVLALAEGVVGHFALSFPPWRADSLSNKSYSQWNYPCAGVDYGAGNITDWPLQGGSLRLELHHKWT YLYVNLGLGRNATNFNVSLTPEFLNVTGKGTLCIDKLPIPVPVENGTLATLQVVTPGSSGSALYNCADIRLVEGA KSLDNCTNEGVSVKTVHSEQDAGASGNASSGQQAKGLAASTSAGPYTIALGTACVLVSLGLSLVL* |
| Coding | >Ophcf2|02438 ATGGTTGCGGGATTCGTTGTCGTGGCTTTTGTTTTGGCCTTGGCTGAGGGCGTTGTTGGCCACTTTGCCCTCTCC TTTCCCCCTTGGCGAGCCGACTCTCTGAGTAACAAATCCTACAGCCAATGGAACTACCCCTGCGCCGGCGTCGAC TACGGAGCCGGCAACATCACCGACTGGCCTCTTCAAGGCGGCTCCCTCCGTCTGGAGCTGCACCACAAATGGACC TACCTCTACGTCAACCTCGGCCTCGGCCGCAACGCCACAAACTTCAACGTCTCCCTCACCCCGGAGTTTCTCAAC GTTACCGGCAAGGGCACCCTCTGCATCGACAAGCTGCCCATCCCCGTTCCCGTCGAGAACGGCACCCTGGCGACT CTTCAGGTCGTCACCCCTGGCAGCTCCGGCTCGGCGCTGTACAACTGCGCCGATATCCGGCTCGTTGAGGGTGCC AAGTCGCTTGATAACTGTACAAACGAGGGCGTCAGTGTCAAGACGGTTCATAGTGAGCAGGATGCCGGTGCTAGC GGGAATGCCTCGTCTGGGCAGCAGGCCAAAGGTCTGGCTGCGTCGACGTCGGCGGGCCCTTATACTATCGCCTTG GGAACCGCCTGTGTGCTGGTTTCCTTGGGTCTTTCGCTTGTTCTGTAG |
| Transcript | >Ophcf2|02438 ATGGTTGCGGGATTCGTTGTCGTGGCTTTTGTTTTGGCCTTGGCTGAGGGCGTTGTTGGCCACTTTGCCCTCTCC TTTCCCCCTTGGCGAGCCGACTCTCTGAGTAACAAATCCTACAGCCAATGGAACTACCCCTGCGCCGGCGTCGAC TACGGAGCCGGCAACATCACCGACTGGCCTCTTCAAGGCGGCTCCCTCCGTCTGGAGCTGCACCACAAATGGACC TACCTCTACGTCAACCTCGGCCTCGGCCGCAACGCCACAAACTTCAACGTCTCCCTCACCCCGGAGTTTCTCAAC GTTACCGGCAAGGGCACCCTCTGCATCGACAAGCTGCCCATCCCCGTTCCCGTCGAGAACGGCACCCTGGCGACT CTTCAGGTCGTCACCCCTGGCAGCTCCGGCTCGGCGCTGTACAACTGCGCCGATATCCGGCTCGTTGAGGGTGCC AAGTCGCTTGATAACTGTACAAACGAGGGCGTCAGTGTCAAGACGGTTCATAGTGAGCAGGATGCCGGTGCTAGC GGGAATGCCTCGTCTGGGCAGCAGGCCAAAGGTCTGGCTGCGTCGACGTCGGCGGGCCCTTATACTATCGCCTTG GGAACCGCCTGTGTGCTGGTTTCCTTGGGTCTTTCGCTTGTTCTGTAG |
| Gene | >Ophcf2|02438 ATGGTTGCGGGATTCGTTGTCGTGGCTTTTGTTTTGGCCTTGGCTGAGGGCGTTGTTGGCCACTTTGCCCTCTCC TTTCCCCCTTGGCGAGCCGACTCTCTGAGTAACAAATCCTACAGCCAATGGAACTACCCCTGTACGTACGAAAGA CACACGCAACCACGTCCGCCCGTCCGTCAAGGCTAACCTCCAAACCTCGCAGGCGCCGGCGTCGACTACGGAGCC GGCAACATCACCGACTGGCCTCTTCAAGGCGGCTCCCTCCGTCTGGAGCTGCACCACAAATGGACCTACCTCTAC GTCAACCTCGGCCTCGGCCGCAACGCCACAAACTTCAACGTCTCCCTCACCCCGGAGTTTCTCAACGTTACCGGC AAGGGCACCCTCTGCATCGACAAGCTGCCCATCCCCGTTCCCGTCGAGAACGGCACCCTGGCGACTCTTCAGGTC GTCACCCCTGGCAGCTCCGGCTCGGCGCTGTACAACTGCGCCGATATCCGGCTCGTTGAGGGTGCCAAGTCGCTT GATAACTGTACAAACGAGGGCGTCAGTGTCAAGACGGTTCATAGTGAGCAGGATGCCGGTGCTAGCGGGAATGCC TCGTCTGGGCAGCAGGCCAAAGGTCTGGCTGCGTCGACGTCGGCGGGCCCTTATACTATCGCCTTGGGAACCGCC TGTGTGCTGGTTTCCTTGGGTCTTTCGCTTGTTCTGTAG |