Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|02406
Gene name
Locationscaffold_02:3619705..3620554
Strand-
Gene length (bp)849
Transcript length (bp)618
Coding sequence length (bp)618
Protein length (aa) 206

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00071 Ras Ras family 5.7E-53 15 190
PF08477 Roc Ras of Complex, Roc, domain of DAPkinase 9.2E-21 15 128
PF00025 Arf ADP-ribosylation factor family 1.7E-07 13 138

GO

GO Term Description Terminal node
GO:0005525 GTP binding Yes
GO:0003924 GTPase activity Yes
GO:0003824 catalytic activity No
GO:0016462 pyrophosphatase activity No
GO:0097159 organic cyclic compound binding No
GO:0019001 guanyl nucleotide binding No
GO:1901363 heterocyclic compound binding No
GO:0043168 anion binding No
GO:0005488 binding No
GO:0017111 nucleoside-triphosphatase activity No
GO:1901265 nucleoside phosphate binding No
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides No
GO:0035639 purine ribonucleoside triphosphate binding No
GO:0016817 hydrolase activity, acting on acid anhydrides No
GO:0016787 hydrolase activity No
GO:0003674 molecular_function No
GO:0032553 ribonucleotide binding No
GO:0017076 purine nucleotide binding No
GO:0032555 purine ribonucleotide binding No
GO:0000166 nucleotide binding No
GO:0036094 small molecule binding No
GO:0032561 guanyl ribonucleotide binding No
GO:0043167 ion binding No
GO:0097367 carbohydrate derivative binding No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cell membrane|Lysosome/Vacuole 0.3607 0.1971 0.0224 0.6442 0.2286 0.1288 0.306 0.6597 0.6522 0.0813

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 89.56 47.15 131.98
Alive In ants, during behavior modification 218.84 123.24 314.45
Dead In ants, recently dead 229.11 131.56 326.67

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.818411 no
Dead Fungus 0.000238 yes

Orthologs

Orthofinder run ID4
Orthogroup4978
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7738
Ophiocordyceps australis map64 (Brazil) OphauB2|2797
Ophiocordyceps camponoti-floridani Ophcf2|02406 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|855
Ophiocordyceps kimflemingae Ophio5|4406
Ophiocordyceps subramaniannii Hirsu2|2130

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|02406
MPLVLCGGSKTVQRKLVLLGDGACGKTSLLNVFTRGYFPTVYEPTVFENYVHDIFVDSVHIELSLWDTAGQEEFD
RLRSLSYDDTDLIMLCYSVDSKDSLENVESKWVGEIADNCPGVKLVLVALKCDLREQSEDEDAPVPDDRREKGPL
INYDQGLEVARRIGASRYLECSAMKNRGVNEAFTEAARVALSVNKERKEKKCIVM*
Coding >Ophcf2|02406
ATGCCCCTTGTTCTCTGCGGCGGATCCAAGACGGTCCAGCGCAAGCTGGTTCTGCTGGGAGACGGTGCCTGTGGC
AAGACTTCACTGCTCAACGTCTTTACCAGAGGTTACTTCCCAACCGTCTACGAACCGACCGTCTTCGAAAACTAC
GTGCACGACATCTTCGTTGACAGCGTCCACATCGAGCTATCGCTATGGGACACGGCCGGCCAGGAGGAGTTTGAC
CGGCTGCGGTCGCTGTCGTACGATGACACGGACCTCATCATGCTGTGCTACTCGGTCGACAGCAAGGACTCGCTC
GAAAACGTCGAATCCAAGTGGGTGGGCGAGATAGCCGATAACTGTCCCGGCGTCAAGCTGGTGCTCGTCGCGCTC
AAGTGCGATCTGCGCGAGCAGAGCGAAGACGAAGACGCGCCCGTGCCAGACGACCGTCGCGAAAAGGGCCCGCTC
ATCAACTACGATCAAGGTCTAGAGGTGGCCCGTCGGATAGGCGCCTCTCGCTACCTCGAGTGCTCCGCCATGAAG
AACCGGGGCGTCAACGAGGCCTTTACCGAGGCTGCCCGCGTCGCCCTCAGCGTCAACAAGGAGCGCAAAGAGAAG
AAGTGCATCGTCATGTGA
Transcript >Ophcf2|02406
ATGCCCCTTGTTCTCTGCGGCGGATCCAAGACGGTCCAGCGCAAGCTGGTTCTGCTGGGAGACGGTGCCTGTGGC
AAGACTTCACTGCTCAACGTCTTTACCAGAGGTTACTTCCCAACCGTCTACGAACCGACCGTCTTCGAAAACTAC
GTGCACGACATCTTCGTTGACAGCGTCCACATCGAGCTATCGCTATGGGACACGGCCGGCCAGGAGGAGTTTGAC
CGGCTGCGGTCGCTGTCGTACGATGACACGGACCTCATCATGCTGTGCTACTCGGTCGACAGCAAGGACTCGCTC
GAAAACGTCGAATCCAAGTGGGTGGGCGAGATAGCCGATAACTGTCCCGGCGTCAAGCTGGTGCTCGTCGCGCTC
AAGTGCGATCTGCGCGAGCAGAGCGAAGACGAAGACGCGCCCGTGCCAGACGACCGTCGCGAAAAGGGCCCGCTC
ATCAACTACGATCAAGGTCTAGAGGTGGCCCGTCGGATAGGCGCCTCTCGCTACCTCGAGTGCTCCGCCATGAAG
AACCGGGGCGTCAACGAGGCCTTTACCGAGGCTGCCCGCGTCGCCCTCAGCGTCAACAAGGAGCGCAAAGAGAAG
AAGTGCATCGTCATGTGA
Gene >Ophcf2|02406
ATGCCCCTTGTTCTCTGCGGCGGATCCAAGACGGTCCAGCGCAAGCTGGTTCTGCTGTACGTGGCCAAAAGCTAT
GCACGCTCACGGTGGCGAGATGCTGACATGCAATCTGCAGGGGAGACGGTGCCTGTGGCAAGACTTCACTGCTCA
ACGTCTTTACCAGAGGGTACGCTGTCTCCGTCGACGGGATATCGGCTGCCATTTCTCACCTCGATGCTCAGTTAC
TTCCCAACCGTCTACGAACCGACCGTCTTCGAAAACTACGTGCACGGTACGAGGGCAACCAGCGGCGGATGCCTG
CCCCCTGGAGACGCGACGCTAACGAGACAACGGCGGTAGACATCTTCGTTGACAGCGTCCACATCGAGCTATCGC
TATGGGACACGGCCGGCCAGGAGGAGTTTGACCGGCTGCGGTCGCTGTCGTACGGTACGTGGAGCGTCCAAGCAA
GGCGAGACTCGGCTAACGCGTTCGACAGATGACACGGACCTCATCATGCTGTGCTACTCGGTCGACAGCAAGGAC
TCGCTCGAAAACGTCGAATCCAAGTGGGTGGGCGAGATAGCCGATAACTGTCCCGGCGTCAAGCTGGTGCTCGTC
GCGCTCAAGTGCGATCTGCGCGAGCAGAGCGAAGACGAAGACGCGCCCGTGCCAGACGACCGTCGCGAAAAGGGC
CCGCTCATCAACTACGATCAAGGTCTAGAGGTGGCCCGTCGGATAGGCGCCTCTCGCTACCTCGAGTGCTCCGCC
ATGAAGAACCGGGGCGTCAACGAGGCCTTTACCGAGGCTGCCCGCGTCGCCCTCAGCGTCAACAAGGAGCGCAAA
GAGAAGAAGTGCATCGTCATGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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